mRNA_H-paniculata_contig11308.842.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11308.842.1
Unique NamemRNA_H-paniculata_contig11308.842.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11308.842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11308contigH-paniculata_contig11308:1904..5034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1602
Cds size1599
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11308.842.1prot_H-paniculata_contig11308.842.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11308 1906..5034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928839.2096848-CDS-H-paniculata_contig11308:1905..24401622928839.2096848-CDS-H-paniculata_contig11308:1905..2440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11308 1906..2440 -
1691480639.8361485-CDS-H-paniculata_contig11308:1905..24401691480639.8361485-CDS-H-paniculata_contig11308:1905..2440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11308 1906..2440 -
1622928839.2258246-CDS-H-paniculata_contig11308:2482..28111622928839.2258246-CDS-H-paniculata_contig11308:2482..2811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11308 2483..2811 -
1691480639.84388-CDS-H-paniculata_contig11308:2482..28111691480639.84388-CDS-H-paniculata_contig11308:2482..2811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11308 2483..2811 -
1622928839.242357-CDS-H-paniculata_contig11308:3443..39381622928839.242357-CDS-H-paniculata_contig11308:3443..3938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11308 3444..3938 -
1691480639.851319-CDS-H-paniculata_contig11308:3443..39381691480639.851319-CDS-H-paniculata_contig11308:3443..3938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11308 3444..3938 -
1622928839.2573342-CDS-H-paniculata_contig11308:4794..50341622928839.2573342-CDS-H-paniculata_contig11308:4794..5034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11308 4795..5034 -
1691480639.8586943-CDS-H-paniculata_contig11308:4794..50341691480639.8586943-CDS-H-paniculata_contig11308:4794..5034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11308 4795..5034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11308.842.1

>prot_H-paniculata_contig11308.842.1 ID=prot_H-paniculata_contig11308.842.1|Name=mRNA_H-paniculata_contig11308.842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=533bp
GRVGKGSDLGLPREGGAGGGDGVPLAVELVKCEVRMVEVLDRSTTAVQPG
GKQQGDRWNSAGPGGSGSRVSSRRPMTQLQIAIQLRTSTPVTVARLDHRG
GNLVDASAARSTQRTRASPRSPSPFSDPRSPTAGVYPSPCDTAGQQQQPR
AAAASSSRFSTNRRSSSFSDRYGSVAVARQMSGGQGNCNLHDNSASEEGE
IEEDCWDDKDSHALPSEWGMVPKELAAPAAASIGGEAGSTEDVAEIGIDH
LLGLNVLLPSAFPTKARAKSGRMSGPAAEASLNRRFQGANDRGVCSGKKR
QRPTDGDDGDDGGDGDPLVSDRAQEGARCSGHQDGYRGDSNDNDNNNNNN
NNNNNNNNDVHGNAFKAINDDDSGSSQRQERQQQQHRWQQQLQRRPPQQS
VFDAQDGRNQRQPQTVSTRDTNATSHSSSAKYDPRQAKRSRKDPSATATA
VGGDKREWSWGLPWFRRQGLTTPKQKVRGNSSISLSPVPNSDAEDCSVAH
TIVVSGLDGSSSGAHDEEGWEERRGDGIGKEPS
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mRNA from alignment at H-paniculata_contig11308:1904..5034-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11308.842.1 ID=mRNA_H-paniculata_contig11308.842.1|Name=mRNA_H-paniculata_contig11308.842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3131bp|location=Sequence derived from alignment at H-paniculata_contig11308:1904..5034- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGGGTAGGGAAAGGGAGTGATCTCGGGCTCCCGCGTGAAGGAGGCGC
AGGAGGCGGCGATGGTGTACCGTTAGCCGTGGAGTTGGTGAAGTGCGAGG
TTAGGATGGTTGAGGTGTTGGATCGATCGACAACGGCGGTACAGCCGGGG
GGGAAGCAACAGGGTGATAGGTGGAATAGTGCTGGGCCAGGTGGCAGTGG
TTCGAGGGTGTCGTCGCGTAGGCCAATGACGCAGCTCCAGGTAGGAATGA
TGGGCGGTTGGCTTTTGTCGGGAGGGGGGGGGGAGTTACTTGTGCTTTGC
GTGCCGTAGCTGTCTGACCATTGACTACGCGTCCTCGGGAGGACGAAGCT
GTTGCTCCTATCAGGGCGATTGCCGACGTCCAATCGGTGTATGTGTGGGG
GGAGGGAATAGATCTACTCTGGTTAGTTTGGTCCGCGAGCATGGTGAAGG
CTTTGTGGCAAAGGCGGGAGTCTTGTCTTCAGTTATCGAATGGAAGTGAC
ATGCGCATTGATGCCACATTTTCTCTTGGTTGCGCCACCAACCTGTGTAT
CCTTTTTTCTCGGTGATTGTTGCGTTTGTTGGGCGAAAGAGGGGAGAGCT
AATTGTGGAACCGTTTATCAATATCAGAAAAACACCTCAAGTGTTTTTGT
TGTGTGTCAGTAGATAACACTATCGTATTTAATATTGGTCGAGCGTGCAG
CCAAGTAGCTTAATCGCCGAGGAAAAATATAAGCAGTCGGCCAATATTCT
CTCCCTTCTTCTGTTTGGCCAGATCGACACGAAACAGAACAAATCGACAC
AAAACGAAACGGAATGGAACGAAACGAAGCAGTTGAGTAGCCGTGCTCGT
AACTCCTTTGGCAGTCAGAGAGATGAAAATGACATGTTTGCGCTCAGCGC
CGGAAATGTAGCCTCGTCAATCCTGTGTCTCAACGTGGTCAAATTATTTG
AAACTCATCGAACAAGTCTCAAACGCTTTGTCTACAGTTTATTGTGCGAT
CATTTTGCGCTTGTGCTTGCCGTCACCCACCTACCTCTTATTCCGCTCCT
CGCCCCCTCGCCCCCTCGTCTTCCCTTACACTTCCCCCGCCAATAGATCG
CCATACAGCTTCGGACGAGCACTCCGGTCACGGTGGCCCGGCTCGACCAC
CGCGGCGGGAACCTCGTGGACGCGTCGGCCGCTCGATCAACTCAACGAAC
CCGGGCCTCGCCGCGCTCCCCTTCTCCTTTTTCTGACCCGCGATCCCCGA
CTGCCGGCGTGTATCCATCGCCGTGTGACACCGCGGGTCAACAGCAACAA
CCAAGGGCAGCGGCGGCTTCTTCAAGCCGTTTCTCAACAAACCGCCGTTC
AAGCAGTTTCTCCGATCGGTACGGGTCGGTTGCGGTTGCCCGTCAAATGT
CGGGGGGCCAGGGCAATTGCAATCTTCATGATAACTCGGCGTCGGAAGAG
GGAGAGATTGAAGAGGATTGTTGGGATGATAAGGATAGTCATGCTCTTCC
GTCGGAGTGGGGGATGGTCCCCAAGGAGCTGGCCGCGCCGGCGGCAGCGA
GTATCGGAGGAGAGGCAGGGTCCACTGAAGATGTCGCAGAAGTGAGGGAG
TTGAAAGTGTGGAGGAGGGAGGCTAGGTGTTGGAACTGGGAGATATGAGC
CCCCTTGGAATATGCACAAATATGTTTGGACAAATGACAATACTCGTAGT
ACGATTCAGTGAATGGTATCGGTTGGCTGTACTTTACAGGATATAGTGGC
TTGTGGGGGTGCCCGGGTTGGATATACCAGCGTAGTGCAACGAGTTTAAG
GCTGAAACGAACGATGAGTCCGATAGAGCTATTTAGCTGCCTATCATGTC
TTATCGATCATCTACCGCGGCACTCATGTACATTGGGTTCACAAAAATAT
TGCCATTTTTTTCTTTTTTAACCCCTGGAAGGCTAAGGCAAAACCTTTAT
CCGATGCTTCCATACTTGAGTATTTCTACCAAAGTATTTCTACAGTTCCT
TTAACAGAACAGAGTTATTTATTCCTCTTCGGGGTAGGCGCCACCCCGGT
TCGGCTGAACCAAGTAGGCAGTGTGGGGTTGCATCCGCTCAAAAATATTG
CCATTGGTCAAGTAGTTTCTTTACCTGTTCCAAATAACATATACTATTGT
GTTTGCCCCCTAATGCTCCCGTGTCTTGTTTTTTTCGCCCTTTCTTGTGT
TCTCGAACGCTTTTGCGTTTCAGATCGGTATTGACCACCTTCTAGGCCTC
AATGTCCTTCTGCCCTCGGCGTTTCCGACTAAAGCACGGGCAAAGAGCGG
ACGTATGTCGGGGCCGGCAGCAGAAGCGTCGCTGAATCGTCGGTTTCAGG
GCGCCAACGATAGAGGCGTATGTAGCGGCAAAAAGCGGCAGAGACCTACG
GATGGTGATGATGGTGATGATGGTGGTGATGGTGATCCACTTGTGTCAGA
TAGAGCGCAAGAAGGCGCGAGATGCTCCGGACACCAGGATGGCTATCGTG
GTGATAGCAACGACAACGACAACAACAATAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACATCAACAACAACAACAACAATAACAA
CAACGATGTCCACGGCAACGCATTCAAGGCCATCAACGACGACGATAGTG
GTAGTAGCCAACGGCAGGAGCGACAGCAGCAGCAGCATCGATGGCAGCAA
CAACTACAACGACGACCGCCACAACAGAGCGTGTTCGATGCGCAAGATGG
CCGCAACCAACGACAACCGCAAACCGTCTCAACCCGGGATACCAACGCCA
CCAGCCACAGTTCTTCCGCAAAGTATGATCCCAGACAGGCGAAGAGGAGC
CGCAAAGATCCTTCAGCAACGGCGACCGCGGTAGGGGGGGATAAGCGAGA
ATGGAGCTGGGGATTACCGTGGTTCCGGAGGCAAGGACTAACTACTCCAA
AACAAAAGGTGCGAGGGAATAGTTCTATCTCATTGTCGCCTGTGCCAAAT
TCAGATGCGGAAGACTGTTCTGTCGCGCATACCATCGTCGTCTCTGGGTT
GGATGGTTCCAGTAGCGGAGCGCATGATGAGGAAGGGTGGGAGGAGAGGA
GAGGAGATGGGATCGGCAAAGAACCGTCGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig11308:1904..5034-

>mRNA_H-paniculata_contig11308.842.1 ID=mRNA_H-paniculata_contig11308.842.1|Name=mRNA_H-paniculata_contig11308.842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3198bp|location=Sequence derived from alignment at H-paniculata_contig11308:1904..5034- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGGGTAGGGAAAGGGAGTGATCTCGGGCTCCCGCGTGAAGGAGGCGC
AGGAGGCGGCGATGGTGTACCGTTAGCCGTGGAGTTGGTGAAGTGCGAGG
TTAGGATGGTTGAGGTGTTGGATCGATCGACAACGGCGGTACAGCCGGGG
GGGAAGCAACAGGGTGATAGGTGGAATAGTGCTGGGCCAGGTGGCAGTGG
TTCGAGGGTGTCGTCGCGTAGGCCAATGACGCAGCTCCAGGGGAGGGTAG
GGAAAGGGAGTGATCTCGGGCTCCCGCGTGAAGGAGGCGCAGGAGGCGGC
GATGGTGTACCGTTAGCCGTGGAGTTGGTGAAGTGCGAGGTTAGGATGGT
TGAGGTGTTGGATCGATCGACAACGGCGGTACAGCCGGGGGGGAAGCAAC
AGGGTGATAGGTGGAATAGTGCTGGGCCAGGTGGCAGTGGTTCGAGGGTG
TCGTCGCGTAGGCCAATGACGCAGCTCCAGATCGCCATACAGCTTCGGAC
GAGCACTCCGGTCACGGTGGCCCGGCTCGACCACCGCGGCGGGAACCTCG
TGGACGCGTCGGCCGCTCGATCAACTCAACGAACCCGGGCCTCGCCGCGC
TCCCCTTCTCCTTTTTCTGACCCGCGATCCCCGACTGCCGGCGTGTATCC
ATCGCCGTGTGACACCGCGGGTCAACAGCAACAACCAAGGGCAGCGGCGG
CTTCTTCAAGCCGTTTCTCAACAAACCGCCGTTCAAGCAGTTTCTCCGAT
CGGTACGGGTCGGTTGCGGTTGCCCGTCAAATGTCGGGGGGCCAGGGCAA
TTGCAATCTTCATGATAACTCGGCGTCGGAAGAGGGAGAGATTGAAGAGG
ATTGTTGGGATGATAAGGATAGTCATGCTCTTCCGTCGGAGTGGGGGATG
GTCCCCAAGGAGCTGGCCGCGCCGGCGGCAGCGAGTATCGGAGGAGAGGC
AGGGTCCACTGAAGATGTCGCAGAAATCGCCATACAGCTTCGGACGAGCA
CTCCGGTCACGGTGGCCCGGCTCGACCACCGCGGCGGGAACCTCGTGGAC
GCGTCGGCCGCTCGATCAACTCAACGAACCCGGGCCTCGCCGCGCTCCCC
TTCTCCTTTTTCTGACCCGCGATCCCCGACTGCCGGCGTGTATCCATCGC
CGTGTGACACCGCGGGTCAACAGCAACAACCAAGGGCAGCGGCGGCTTCT
TCAAGCCGTTTCTCAACAAACCGCCGTTCAAGCAGTTTCTCCGATCGGTA
CGGGTCGGTTGCGGTTGCCCGTCAAATGTCGGGGGGCCAGGGCAATTGCA
ATCTTCATGATAACTCGGCGTCGGAAGAGGGAGAGATTGAAGAGGATTGT
TGGGATGATAAGGATAGTCATGCTCTTCCGTCGGAGTGGGGGATGGTCCC
CAAGGAGCTGGCCGCGCCGGCGGCAGCGAGTATCGGAGGAGAGGCAGGGT
CCACTGAAGATGTCGCAGAAATCGGTATTGACCACCTTCTAGGCCTCAAT
GTCCTTCTGCCCTCGGCGTTTCCGACTAAAGCACGGGCAAAGAGCGGACG
TATGTCGGGGCCGGCAGCAGAAGCGTCGCTGAATCGTCGGTTTCAGGGCG
CCAACGATAGAGGCGTATGTAGCGGCAAAAAGCGGCAGAGACCTACGGAT
GGTGATGATGGTGATGATGGTGGTGATGGTGATCCACTTGTGTCAGATAG
AGCGCAAGAAGGCGCGAGATGCTCCGGACACCAGGATGGCTATCGTGGTG
ATAGCAACGACAACGACAACAACAATAACAACAACAACAACAACAACAAA
TCGGTATTGACCACCTTCTAGGCCTCAATGTCCTTCTGCCCTCGGCGTTT
CCGACTAAAGCACGGGCAAAGAGCGGACGTATGTCGGGGCCGGCAGCAGA
AGCGTCGCTGAATCGTCGGTTTCAGGGCGCCAACGATAGAGGCGTATGTA
GCGGCAAAAAGCGGCAGAGACCTACGGATGGTGATGATGGTGATGATGGT
GGTGATGGTGATCCACTTGTGTCAGATAGAGCGCAAGAAGGCGCGAGATG
CTCCGGACACCAGGATGGCTATCGTGGTGATAGCAACGACAACGACAACA
ACAATAACAACAACAACAACAACAACAATAACAACAACGATGTCCACGGC
AACGCATTCAAGGCCATCAACGACGACGATAGTGGTAGTAGCCAACGGCA
GGAGCGACAGCAGCAGCAGCATCGATGGCAGCAACAACTACAACGACGAC
CGCCACAACAGAGCGTGTTCGATGCGCAAGATGGCCGCAACCAACGACAA
CCGCAAACCGTCTCAACCCGGGATACCAACGCCACCAGCCACAGTTCTTC
CGCAAAGTATGATCCCAGACAGGCGAAGAGGAGCCGCAAAGATCCTTCAG
CAACGGCGACCGCGGTAGGGGGGGATAAGCGAGAATGGAGCTGGGGATTA
CCGTGGTTCCGGAGGCAAGGACTAACTACTCCAAAACAAAAGGTGCGAGG
GAATAGTTCTATCTCATTGTCGCCTGTGCCAAATTCAGATGCGGAAGACT
GTTCTGTCGCGCATACCATCGTCGTCTCTGGGTTGGATGGTTCCAGTAGC
GGAGCGCATGATGAGGAAGGGTGGGAGGAGAGGAGAGGAGATGGGATCGG
CAAAGAACCGTCGTAACAACAACGATGTCCACGGCAACGCATTCAAGGCC
ATCAACGACGACGATAGTGGTAGTAGCCAACGGCAGGAGCGACAGCAGCA
GCAGCATCGATGGCAGCAACAACTACAACGACGACCGCCACAACAGAGCG
TGTTCGATGCGCAAGATGGCCGCAACCAACGACAACCGCAAACCGTCTCA
ACCCGGGATACCAACGCCACCAGCCACAGTTCTTCCGCAAAGTATGATCC
CAGACAGGCGAAGAGGAGCCGCAAAGATCCTTCAGCAACGGCGACCGCGG
TAGGGGGGGATAAGCGAGAATGGAGCTGGGGATTACCGTGGTTCCGGAGG
CAAGGACTAACTACTCCAAAACAAAAGGTGCGAGGGAATAGTTCTATCTC
ATTGTCGCCTGTGCCAAATTCAGATGCGGAAGACTGTTCTGTCGCGCATA
CCATCGTCGTCTCTGGGTTGGATGGTTCCAGTAGCGGAGCGCATGATGAG
GAAGGGTGGGAGGAGAGGAGAGGAGATGGGATCGGCAAAGAACCGTCG
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