mRNA_H-paniculata_contig11307.841.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11307.841.1
Unique NamemRNA_H-paniculata_contig11307.841.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11307.841.1 vs. uniprot
Match: D8LEV4_ECTSI (C2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV4_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 2.240e-11
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:   16 RPFKVHSGHLIVPFTNRCVREDRD-----IVGHGLALAIDPGMNWSPWEPFLANVAAAATERFEALELE 207
            RPF +H+GH+IVPF N  VRE        ++GHG+ LA+D G++W  WE  L   AA AT  FE LE E
Sbjct: 5527 RPFMLHTGHVIVPFLNGRVRETEKRGPNVVIGHGVVLAVDRGVDWRCWESHLTETAAVATRCFERLERE 5595
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BLAST of mRNA_H-paniculata_contig11307.841.1 vs. uniprot
Match: A0A6H5KK33_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK33_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 5.690e-11
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:   16 RPFKVHSGHLIVPFTNRCVREDRD-----IVGHGLALAIDPGMNWSPWEPFLANVAAAATERFEALELE 207
            RPF +H+GH+IVPF N  VRE        ++GHG+ LA+D G++W  WE  L   AA AT  F+ LE E
Sbjct: 2820 RPFMLHTGHVIVPFLNGRVRETEKGCPNVVIGHGVVLAVDRGVDWRCWESHLTETAAVATRCFDRLERE 2888
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11307.841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEV4_ECTSI2.240e-1149.28C2 domain containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KK33_9PHAE5.690e-1147.83C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11307contigH-paniculata_contig11307:7497..7718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue8.4e-10
Seed eggNOG ortholog2880.D8LEV4
KEGG koko:K12486
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG1030@1,KOG1030@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size222
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928839.1129897-CDS-H-paniculata_contig11307:7496..77181622928839.1129897-CDS-H-paniculata_contig11307:7496..7718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11307 7497..7718 +
1691480639.8269734-CDS-H-paniculata_contig11307:7496..77181691480639.8269734-CDS-H-paniculata_contig11307:7496..7718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11307 7497..7718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11307.841.1prot_H-paniculata_contig11307.841.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11307 7497..7718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11307.841.1

>prot_H-paniculata_contig11307.841.1 ID=prot_H-paniculata_contig11307.841.1|Name=mRNA_H-paniculata_contig11307.841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MSTHTRPFKVHSGHLIVPFTNRCVREDRDIVGHGLALAIDPGMNWSPWEP
FLANVAAAATERFEALELEALEAE
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mRNA from alignment at H-paniculata_contig11307:7497..7718+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11307.841.1 ID=mRNA_H-paniculata_contig11307.841.1|Name=mRNA_H-paniculata_contig11307.841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig11307:7497..7718+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAACGCACACTCGGCCGTTCAAGGTGCACTCGGGGCACCTCATTGT
ACCATTTACGAATAGGTGTGTGCGGGAGGACCGCGACATCGTGGGGCACG
GGCTAGCCCTCGCGATTGACCCAGGAATGAACTGGAGTCCGTGGGAGCCA
TTTCTCGCCAACGTGGCCGCTGCGGCTACCGAAAGATTTGAGGCCCTCGA
GCTTGAAGCTCTCGAAGCCGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig11307:7497..7718+

>mRNA_H-paniculata_contig11307.841.1 ID=mRNA_H-paniculata_contig11307.841.1|Name=mRNA_H-paniculata_contig11307.841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig11307:7497..7718+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAACGCACACTCGGCCGTTCAAGGTGCACTCGGGGCACCTCATTGT
ACCATTTACGAATAGGTGTGTGCGGGAGGACCGCGACATCGTGGGGCACG
GGCTAGCCCTCGCGATTGACCCAGGAATGAACTGGAGTCCGTGGGAGCCA
TTTCTCGCCAACGTGGCCGCTGCGGCTACCGAAAGATTTGAGGCCCTCGA
GCTTGAAGCTCTCGAAGCCGAAATGTCAACGCACACTCGGCCGTTCAAGG
TGCACTCGGGGCACCTCATTGTACCATTTACGAATAGGTGTGTGCGGGAG
GACCGCGACATCGTGGGGCACGGGCTAGCCCTCGCGATTGACCCAGGAAT
GAACTGGAGTCCGTGGGAGCCATTTCTCGCCAACGTGGCCGCTGCGGCTA
CCGAAAGATTTGAGGCCCTCGAGCTTGAAGCTCTCGAAGCCGAA
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