mRNA_H-paniculata_contig11307.838.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11307.838.1
Unique NamemRNA_H-paniculata_contig11307.838.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11307.838.1 vs. uniprot
Match: A0A6H5KK33_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK33_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 7.450e-33
Identity = 70/142 (49.30%), Postives = 89/142 (62.68%), Query Frame = 1 
Query:    7 GDDDRLRHALVVPCAPGQISKEDLTVADEIARVVDVAAVAVEKRRRRALLMESCADAVETLCSKRQHDHKDLCDDVVDILESVCKGAGDEVDCPRRDMVSIISLLTPGGYRLRVAACS-GWNGDQAYRDGDSSKTGSSIEGV 429
            G D+R RH +V+PC PGQISKED+TVA E+AR  D A   V KRR R  +++ CA++VETLC KR+  H+ L  DVV  L   C GAG EVD P RDM   + LL+ GGYRL V A S GW+   A+    ++ + S   G 
Sbjct: 2125 GADERPRHVIVIPCLPGQISKEDVTVALELARAADEACNTVHKRRLRQYMLDRCAESVETLCFKRKQHHEGLFGDVVSTLNPACSGAGPEVDGPLRDMPVAVFLLSSGGYRLNVVASSAGWSDGHAFNQCSAATSESGDAGA 2266
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11307.838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KK33_9PHAE7.450e-3349.30C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11307contigH-paniculata_contig11307:2321..3452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size483
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11307.838.1prot_H-paniculata_contig11307.838.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11307 2613..3434 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928838.7918267-UTR-H-paniculata_contig11307:2320..23801622928838.7918267-UTR-H-paniculata_contig11307:2320..2380Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11307 2321..2380 +
1691480639.7188666-UTR-H-paniculata_contig11307:2320..23801691480639.7188666-UTR-H-paniculata_contig11307:2320..2380Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11307 2321..2380 +
1622928838.8134584-UTR-H-paniculata_contig11307:2516..26121622928838.8134584-UTR-H-paniculata_contig11307:2516..2612Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11307 2517..2612 +
1691480639.7306159-UTR-H-paniculata_contig11307:2516..26121691480639.7306159-UTR-H-paniculata_contig11307:2516..2612Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11307 2517..2612 +
1622928838.879515-UTR-H-paniculata_contig11307:3434..34521622928838.879515-UTR-H-paniculata_contig11307:3434..3452Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11307 3435..3452 +
1691480639.7656164-UTR-H-paniculata_contig11307:3434..34521691480639.7656164-UTR-H-paniculata_contig11307:3434..3452Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11307 3435..3452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928838.851382-CDS-H-paniculata_contig11307:2612..26731622928838.851382-CDS-H-paniculata_contig11307:2612..2673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11307 2613..2673 +
1691480639.7380235-CDS-H-paniculata_contig11307:2612..26731691480639.7380235-CDS-H-paniculata_contig11307:2612..2673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11307 2613..2673 +
1622928838.8639815-CDS-H-paniculata_contig11307:3186..34341622928838.8639815-CDS-H-paniculata_contig11307:3186..3434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11307 3187..3434 +
1691480639.7533574-CDS-H-paniculata_contig11307:3186..34341691480639.7533574-CDS-H-paniculata_contig11307:3186..3434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11307 3187..3434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11307.838.1

>prot_H-paniculata_contig11307.838.1 ID=prot_H-paniculata_contig11307.838.1|Name=mRNA_H-paniculata_contig11307.838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MESCADAVETLCSKRQHDHKDLCDDVVDILESVCKGAGDEVDCPRRDMVS
IISLLTPGGYRLRVAACSGWNGDQAYRDGDSSKTGSSIEGVEVRVSHAYC
QI*
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mRNA from alignment at H-paniculata_contig11307:2321..3452+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11307.838.1 ID=mRNA_H-paniculata_contig11307.838.1|Name=mRNA_H-paniculata_contig11307.838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1132bp|location=Sequence derived from alignment at H-paniculata_contig11307:2321..3452+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAACGGGAGACGATGATAGGCTGAGGCATGCGCTGGTTGTGCCCTGTGC
GCCAGGACAGGTGAGCAGTCACAATAGTTGGAATACTTTGAGTTGATGTT
TTTCTTGTTACTTACGGTGGCTCGGGTTGTTCGATTGCTCCTCTCGAACA
GTCTCGAAACGAATTTTGACCATTTCGTACACCGACTGAAGAACAGATTA
GTAAGGAGGACTTGACTGTGGCCGACGAAATAGCCCGGGTGGTGGATGTG
GCAGCTGTTGCTGTAGAGAAACGACGAAGAAGAGCCCTGTTGATGGAGAG
CTGTGCTGATGCCGTGGAAACCCTCTGCAGTAAGCGGCAGCACGACCACA
AAGGTGAGGTAACTAAGTCAATGTCGTCGCAATCGATGGATCTGCCTTCT
GCTGCGCCTGCAATATCTACCTATCGACCGGCCACTGGTGGGTCTTGCGA
CTTGTTTGTCGAAAATACCGAGACTTTGACTATCTAACGCCATTTTGCGC
AAATCGGATTATCACAGGTGAAAAAGAATCCGATTTGCCTGGTGACAGCT
AAAAAAGAAATTTCTCCAGTCTTCGGCATTCTCGTTTTGCAATCAACGCT
GCCTTTTAGATTTTTCGTTCCCTGAGTGTGGGAAACAAGGGCATTTCCAT
GGAGCCACTTTGTGGAAGCGATTGAAATAGCCATGGTGACGAATCCCCTA
TTAAACGGTATCTGCACAGCACGTATTGGTAGTGTTGGTTCTACTACAGT
ATCTTGCCGAACGTCAACAATACTTTGCTATACCGACGAGCGTGGTTGGC
ATACTAAATCTTATATATTACTAAAACTTTACCCAACATGTCTCACTGCC
ATGTGTACAATTGAAGATCTTTGTGATGATGTCGTCGACATCCTCGAGTC
AGTCTGTAAAGGAGCTGGGGACGAGGTAGATTGCCCCCGCCGAGACATGG
TGTCGATCATATCTCTCCTTACACCGGGTGGGTATCGCCTTCGTGTGGCG
GCATGTTCCGGATGGAATGGCGATCAGGCGTATCGAGACGGGGATTCATC
AAAGACGGGAAGTTCGATTGAAGGTGTTGAGGTACGAGTGTCTCACGCGT
ACTGTCAGATCTAGTGAGAGTTTGGGGCTGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig11307:2321..3452+

>mRNA_H-paniculata_contig11307.838.1 ID=mRNA_H-paniculata_contig11307.838.1|Name=mRNA_H-paniculata_contig11307.838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig11307:2321..3452+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGAGCTGTGCTGATGCCGTGGAAACCCTCTGCAGTAAGCGGCAGCA
CGACCACAAAGATGGAGAGCTGTGCTGATGCCGTGGAAACCCTCTGCAGT
AAGCGGCAGCACGACCACAAAGATCTTTGTGATGATGTCGTCGACATCCT
CGAGTCAGTCTGTAAAGGAGCTGGGGACGAGGTAGATTGCCCCCGCCGAG
ACATGGTGTCGATCATATCTCTCCTTACACCGGGTGGGTATCGCCTTCGT
GTGGCGGCATGTTCCGGATGGAATGGCGATCAGGCGTATCGAGACGGGGA
TTCATCAAAGACGGGAAGTTCGATTGAAGGTGTTGAGGTACGAGTGTCTC
ACGCGTACTGTCAGATCTAGATCTTTGTGATGATGTCGTCGACATCCTCG
AGTCAGTCTGTAAAGGAGCTGGGGACGAGGTAGATTGCCCCCGCCGAGAC
ATGGTGTCGATCATATCTCTCCTTACACCGGGTGGGTATCGCCTTCGTGT
GGCGGCATGTTCCGGATGGAATGGCGATCAGGCGTATCGAGACGGGGATT
CATCAAAGACGGGAAGTTCGATTGAAGGTGTTGAGGTACGAGTGTCTCAC
GCGTACTGTCAGATCTAG
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