mRNA_H-paniculata_contig1129.825.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig1129.825.1 vs. uniprot
Match: D8LNT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNT1_ECTSI) HSP 1 Score: 696 bits (1795), Expect = 1.400e-228 Identity = 494/1185 (41.69%), Postives = 604/1185 (50.97%), Query Frame = 3
Query: 15 GFHRRRDPNFFLSSDPCLTAVGAPRALVRNYAGYSAIGKPRQGRWSAWEREGMAFDAASTVLQEREDICLPVEYLTELIQEDSKLNSSSRSFDQSDHLCGDLSWPGPCIENLAAGADAARASADPPLLVHAVGPSNADLALLRPGQWWSSNRSHIDPENAESARANSG--DGN---GGDEIPNGTTNGNSSRPRGRRSRRKKENINESRFSAGDNVERLALDSGRVRQISAAMPTPIYPPQVFARCDYSATLV---ELRGDLD-------------LLRRQKNAVLSSTLADEFQDNYPGVLAGFR------AHTSGLTAVEKLVFARRLTCAACSPYTRAHAAFLDEDFRLFTWHPNRGAVMHGPGPLQFPAPVLNKSSGSVRVEARARRARNTDVSLDYGHHPRVLWMVGQYKTYRVDLRESPSSATLTPALDPRTYFE-FSKNPAVQESIVKGGSGAFGGRGEPPRVSALAVGRRSVHEVFVAMGLHLACMDDRFPKDAVARWDLPHEVDQLRWLPGLPSEGVD-AEEIILASARSSTRYYVNTWAKDVPRWRGLQTRLGLDDTSPAASAARRPLTFGLPASTLAVGETRSGGLILALPPP-KGQKAQTRNDGLCFIYATSTGDVYGQRLEVRRSGGEEIGTSKDEPAAVVLPHRSSLISDRIQSMLPCGDLCLDSATTG------DAVVAENQEGKAAGTADRDIGIIEAVNRD---GHSSSEEGNENDEDTSESVGSSGDMRESDGDRTARSGGLKRTARKRSXXXXXXXXXXXXNGGYRE----------DG-ESAFSSA------------------------------------HLTQRREEACDTVVANGPDKTSRG-----------VSRDP-----------------EYFPLNAGALRASLEVVPEGELCGCTRLPPLLKLVIEREGEYMNCFCQSRKKEAEGLENPVESVENADEQRRVGLARLQQRKDDVAKFLRQPRTPTELLVFCRNRLGIFLPGNPSRAPISPQKMTGNKTPDTPNA-----------------------------------GGCSPSDIINDTIAAAAVAETVLRWGQPFRSIKTKWRVAPAPGAFVVADAAAAESSAPGTSRQAMTGHAEEDSVVLCSAQGMLKGKPRPSLAPGKFGAPFASDFSVQDVRWLKDQW 3122
GF RRD NF L+SD CLTAVGAP L RN+AGY+++G+PRQGRW E++ + F AS L++R DIC+PVE L LI E SKL SS+RS+D D +C DLSWPG C+ENL+AG + +S PLL HA GP N+ LALLRP Q P + G DG GG ++ G + ++S +A + +RLAL +G +RQISA P P VF RCDYSATL +++ LD LRR K A AD R + G EKLVF+RRLTC ACSP+T +AAFLDE+ RLF+WH RGAV HG GPL AP S+ A+ RRARN DV+LDYG HPRVLW+ G+++ YRVDLRE+PS A L PALDP YF FS SIV GG G FGGRGE P V +LAVGRRS H+VFVA GLHLACMD RFPK VARWDLP EVDQLRWLPG+P E + AEEI+LAS R S +YVNTWA+DVP WRG Q RLGLDDTSPAASAARRPLTF LPA+ L+ GETRSGGL+L L P +G A DGL F++ATS GD YGQRLE+RR GG G + + A P RS+L+SDRIQSMLPCGD+CLD ++ A G A G E R GH ++G + SS D +RS XXXXX +GG E DG E + S A L+ R+ A +T G +RD EYFP+NAGAL A++E VPE +CG L PL+ LV +GE +C K AEG + E A E+R ++L+ KD VA+FL +PRTP ELLVFCR LG+ P + P+ K G + D +A VL WG+PFR+++T WR A + V S PG + + VLCSA+ +LKG+P P L PG G P A D SV+DVRWLKD+W
Sbjct: 9 GFQLRRDANFLLNSDRCLTAVGAPVVLSRNFAGYASLGRPRQGRWGIGEKKEVPFKMASAFLKDRRDICVPVELLAGLIDEQSKLRSSARSWDMPDTVCSDLSWPGSCLENLSAGQELGLSSPAAPLLAHASGPENSHLALLRPRQACRGGS----PSTPSGRNSGKGCVDGTADPGGPDVEAGAGSNDAS-------------------AAIELKDRLALHAGPIRQISAVAPRANARPTVFVRCDYSATLATACKVKDRLDHLGGYNARGVYERRLRRAKVAAGLPVAADSAAXXXXXXXXXXREGEEEESDFDGFEEGEKLVFSRRLTCVACSPFTPKNAAFLDEELRLFSWHSERGAVTHGAGPLPIVAPPGAPERPSLA--AKVRRARNADVALDYGSHPRVLWVAGRHRAYRVDLRENPSPAALAPALDPGVYFTGFS-----DLSIVDGGPGRFGGRGEEPSVRSLAVGRRSAHDVFVAAGLHLACMDARFPKSVVARWDLPQEVDQLRWLPGVPGERAEEAEEIVLASGRRSPGFYVNTWARDVPGWRGYQARLGLDDTSPAASAARRPLTFSLPATPLSEGETRSGGLLLGLAPGGRGSSAAAVGDGLWFVHATSAGDAYGQRLEMRRVGGTGSGEAGGKKAVPASP-RSALLSDRIQSMLPCGDVCLDPDAASYRRPPRPPASKKSSGAVAGGVATEVAGAGEKPPRRKVRGHDDGKDG------VATGGNSSNDSSGXXXXXXXXXXXXXXXXXRRSHXXXXXAGEDCRDGGDSESSGXXXXXXXDGPEHSESEAGRSGTGDPRRXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPRKPPARHGETPRKRTRTREGRGATXXXXXXXXNRDEGGSVGGKGRPGGPKAAVEYFPVNAGALCAAVEKVPENAICGHRYLAPLVALVSTGKGESGDC---GGDKSAEGSSIRGAASEAA-ERRERDFSKLRDSKDRVAEFLLKPRTPDELLVFCRRTLGLEFPADDP--PVRRLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGRARPRVEDATIMVDIARAVLAWGKPFRNVETAWRPAAVGQGYSVMT-----SRLPGPLPRV-------SAPVLCSAREVLKGEPSPFLRPGSVGPPLAVDVSVEDVRWLKDEW 1138
BLAST of mRNA_H-paniculata_contig1129.825.1 vs. uniprot
Match: A0A6H5L1M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1M6_9PHAE) HSP 1 Score: 597 bits (1538), Expect = 1.330e-191 Identity = 443/1103 (40.16%), Postives = 534/1103 (48.41%), Query Frame = 3
Query: 300 DHLCGDLSWPGPCIENLAAGADAARASADPPLLVHAVGPSNADLALLRPGQWWSSNRSHIDPENAESARANSGDGNGGDEIPNGTTNGNSSRPRGRRSRRKKENINESRFSAGDN--------VERLALDSGRVRQISAAMPTPIYPPQVFARCDYSATLV---ELRGDLDLL----------RRQKNAVLSSTL--ADEFQDNYPGVLAGF-------RAHTSGLTAVEKLVFARRLTCAACSPYTRAHAAFLDEDFRLFTWHPNRGAVMHGPGPLQFPAPVLNKSSGSVRVEARARRARNTDVSLDYGHHPRVLWMVGQYKTYRVDLRESPSSATLTPALDPRTYFE-FSKNPAVQESIVKGGSGAFGGRGEPPRVSALAVGRRSVHEVFVAMGLHLACMDDRFPKDAVARWDLPHEVDQLRWLPGLPSEGVD-AEEIILASARSSTRYYVNTWAKDVPRWRGLQTRLGLDDTSPAASAARRPLTFGLPASTLAVGETRSGGLILALPPP-KGQKAQTRNDGLCFIYATSTGDVYGQRLEVRRSGGEEIGTSKDEPAAVVLPHRSSLISDRIQSM-----LPCGDLCLDSATTGDAVVAENQEGKAAGTADRDIGIIEAVNRDGHSSSEEGNENDEDTSESVGSSGDM-RESDGDRTARSGGLKRTARKR-------------------------------------SXXXXXXXXXXXXNG------GYREDG------------------ESAFSSAHLTQRREEA---------------CDTVVANGPDK----TSRGVSRDP----EYFPLNAGALRASLEVVPEGELCGCTRLPPLLKLVIEREGEYMNCFCQSRKKEAEGLENPVESVENADEQRRVGLARLQQRKDDVAKFLRQPRTPTELLVFCRNRLGI-FLPGNPSRA---------------------------------PISPQKMTGNKTPDTPNAGGCSPSDIINDTIAAAAVAETVLRWGQPFRSIKTKWRVAPAPGAFVVADAAAAESSAPGTSRQAMTGHAEE-----DSVVLCSAQGMLKGKPRPSLAPGKFGAPFASDFSVQDVRWLKDQW 3122
D +C DLSWPG C+ENL+AG + +S PPLL HA GP N+ LALLRP Q RS P + N G +GT + PRG + AG N +RLAL +G +RQISA P P VF RCDYSATL +++ LD L RR + A +++ L A E P G + G EKLVF+RRLTC ACSP+T +AAFLDE+ RLF+WHP RG V HG GPL AP S+ A+ARRARN DV+LDYG HPRVLW+ G+++ YRVDLRE PS A L PALDP YF FS S+V GG G FGGRGE PRV +L VGRRS H++FVA GLHLACMD RFPK VARWDLP EVDQLRWLPG+P E + AEEI+LAS R S +YVNTWA+DVP WRG Q RLGLDDTSPAASAARRPLTF LPA+ L+ GETRSGGL+L L P +G A D L F++ATS GD YGQRLE+RR GG +G + A P RS+L+SDRIQS+ LPCGD+CLD K E G G ND D + V + GD ES G R G + ++ S G G+R+DG E+A S + R +E D N D+ +G DP EYFP+NAGALRA++E VPE LC L PL+ LV + E C K AEG E A E+R ++L+ KD VA+FL +PRTP ELLVFCR LG+ FL P+R G + D +A VL WG+PFR+++T WR A A G MT E S VLCSA+ +LKG+P P L PG G P A D SV+DVRWLKD+W
Sbjct: 3 DTVCSDLSWPGSCLENLSAGQELGLSSLAPPLLAHASGPENSHLALLRPRQACRG-RSPSTPSGS----------NNGKGCADGTAD-----PRGP----------DVETGAGSNDASAAIELKDRLALHAGPIRQISAVAPRANARPTVFVRCDYSATLATACKVKDRLDHLGGYNARGVYERRLRRAKVAAGLPAAAESAAAAPAARGGDGREGEEEQLDFDGFEEDEKLVFSRRLTCVACSPFTPKNAAFLDEELRLFSWHPERGTVRHGAGPLPIAAPPGGPERPSLA--AKARRARNADVALDYGSHPRVLWVAGRHRAYRVDLREKPSPAALAPALDPGVYFTGFS-----DLSVVDGGPGRFGGRGEEPRVRSLTVGRRSAHDIFVAAGLHLACMDSRFPKGVVARWDLPQEVDQLRWLPGVPGERAEEAEEIVLASGRRSPGFYVNTWARDVPGWRGYQARLGLDDTSPAASAARRPLTFSLPATPLSEGETRSGGLLLGLAPGGRGSSAAAAGDDLWFVHATSAGDAYGQRLEMRRVGGGGVGEYGGKKAVPASP-RSALLSDRIQSIHKDCRLPCGDVCLDPDAASYHRSPRPPASKXXXXXXXXXVATEVAGAGGKPPRRNGRGND-DGKDGVATGGDSSNESSGSDDGRGSGRQGAPSRKDKRSHGGRRGAGEDRRXXXXXXXXXXXXXXXGNRPECSESEAGHSDQGSGTGDPRWRRGHRDDGRRDSGSSEXXXNGRASSEEAALSPRNPPLRHDETPRKRTRTREGRGAAPSDDGDGNNSDEGGSIEGKGGPGDPKAAVEYFPVNAGALRATVEKVPENALCSHRYLAPLVDLVSTGKEEAGKC---GGDKSAEGSSIRGAGSEAA-ERRERDFSKLRDSKDRVAEFLLKPRTPDELLVFCRRTLGLEFLADPPARRLQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGRVRPRMEDPTIMVDIARAVLAWGKPFRNVETAWRPA-----------------AVGQGYSFMTSRLPEPTPRVSSPVLCSAREVLKGEPSPFLRPGAVGPPLAVDVSVEDVRWLKDEW 1049 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1129.825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1129.825.1 >prot_H-paniculata_contig1129.825.1 ID=prot_H-paniculata_contig1129.825.1|Name=mRNA_H-paniculata_contig1129.825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1042bp MEKAGFHRRRDPNFFLSSDPCLTAVGAPRALVRNYAGYSAIGKPRQGRWSback to top mRNA from alignment at H-paniculata_contig1129:13332..22502- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1129.825.1 ID=mRNA_H-paniculata_contig1129.825.1|Name=mRNA_H-paniculata_contig1129.825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9171bp|location=Sequence derived from alignment at H-paniculata_contig1129:13332..22502- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1129:13332..22502- >mRNA_H-paniculata_contig1129.825.1 ID=mRNA_H-paniculata_contig1129.825.1|Name=mRNA_H-paniculata_contig1129.825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6252bp|location=Sequence derived from alignment at H-paniculata_contig1129:13332..22502- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |