mRNA_H-paniculata_contig11275.815.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11275.815.1
Unique NamemRNA_H-paniculata_contig11275.815.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11275.815.1 vs. uniprot
Match: A0A6A4G9J9_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G9J9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.030e-7
Identity = 36/118 (30.51%), Postives = 60/118 (50.85%), Query Frame = 1 
Query:    1 ALKLAIEEARAEGLPPNRVTELRELVINPYFEAFRRTLGRDPPTDMKPLWVHVPVDARTSRARPRPMSRDKAKWPYDHFTKLAQAGMVITNHQARFNSVAMILPK---KDTYRMLVDY 345
            +L   I++A A G PPN ++ LR  V++ Y + +R   G D P  ++P  V +  D    R +PR     ++ +   H  +L Q G+V  N+ +R+   A+   K   KD +R+  DY
Sbjct:  547 SLGALIQDAEANGFPPNMMSSLRTTVLD-YGDVWRARFGADGPARVRPYSVKLKPDVLPFRCKPRRYPPLQSDFLRSHVAELQQFGLVRLNNASRWACAAVPARKAGLKDAFRLTTDY 663
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BLAST of mRNA_H-paniculata_contig11275.815.1 vs. uniprot
Match: A0A225UJN6_9STRA (Peptidase A2 domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UJN6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.110e-6
Identity = 33/115 (28.70%), Postives = 62/115 (53.91%), Query Frame = 1 
Query:   16 IEEARAEGLPPNRVTELRELVINPYFEAFRRTLGRDPPTDMKPLWVHVPVDARTSRARPRPMSRDKAKWPYDHFTKLAQAGMVITNHQARFNSVAMILPK---KDTYRMLVDYHA 351
            ++ A   GLPP  V  +REL +  + + +R T+G DPP  ++ L V + + A   R+ PR  +  +A++  D+   L   G+V  N+ +R+    + + K   +D +R+ +DY +
Sbjct:  131 LDRAATNGLPPEHVDAVREL-LEEFPDVWRETVGADPPATVERLQVTLQLGAVPHRSPPRKYAPMQAQFIRDYVKFLVDNGLVEQNNASRWACAVVPVRKHGTQDRFRLTIDYRS 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11275.815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6A4G9J9_9STRA1.030e-730.51Reverse transcriptase domain-containing protein n=... [more]
A0A225UJN6_9STRA1.110e-628.70Peptidase A2 domain-containing protein n=1 Tax=Phy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11275contigH-paniculata_contig11275:2536..2886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue2.3e-09
Seed eggNOG ortholog67593.Physo134318
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition
EggNOG OGs2QT1S@2759,COG2801@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928830.8712313-CDS-H-paniculata_contig11275:2535..28861622928830.8712313-CDS-H-paniculata_contig11275:2535..2886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11275 2536..2886 +
1691480637.7876046-CDS-H-paniculata_contig11275:2535..28861691480637.7876046-CDS-H-paniculata_contig11275:2535..2886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11275 2536..2886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11275.815.1prot_H-paniculata_contig11275.815.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11275 2536..2886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11275.815.1

>prot_H-paniculata_contig11275.815.1 ID=prot_H-paniculata_contig11275.815.1|Name=mRNA_H-paniculata_contig11275.815.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
ALKLAIEEARAEGLPPNRVTELRELVINPYFEAFRRTLGRDPPTDMKPLW
VHVPVDARTSRARPRPMSRDKAKWPYDHFTKLAQAGMVITNHQARFNSVA
MILPKKDTYRMLVDYHA
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mRNA from alignment at H-paniculata_contig11275:2536..2886+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11275.815.1 ID=mRNA_H-paniculata_contig11275.815.1|Name=mRNA_H-paniculata_contig11275.815.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig11275:2536..2886+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCTGAAGTTGGCGATAGAAGAGGCGAGGGCCGAGGGTTTGCCGCCAAA
CAGAGTCACGGAGTTAAGAGAGCTAGTGATAAACCCCTACTTCGAGGCGT
TTCGGAGGACGCTGGGCAGGGACCCGCCGACAGACATGAAGCCGCTGTGG
GTGCATGTACCTGTGGATGCGCGAACTTCCCGGGCGCGGCCGCGCCCGAT
GTCGCGTGACAAGGCGAAATGGCCGTATGATCATTTCACGAAGCTGGCAC
AGGCAGGCATGGTGATCACGAATCACCAGGCAAGGTTCAACAGCGTGGCG
ATGATATTGCCCAAGAAGGACACCTACCGAATGCTTGTCGACTACCACGC
A
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Coding sequence (CDS) from alignment at H-paniculata_contig11275:2536..2886+

>mRNA_H-paniculata_contig11275.815.1 ID=mRNA_H-paniculata_contig11275.815.1|Name=mRNA_H-paniculata_contig11275.815.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig11275:2536..2886+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCTGAAGTTGGCGATAGAAGAGGCGAGGGCCGAGGGTTTGCCGCCAAA
CAGAGTCACGGAGTTAAGAGAGCTAGTGATAAACCCCTACTTCGAGGCGT
TTCGGAGGACGCTGGGCAGGGACCCGCCGACAGACATGAAGCCGCTGTGG
GTGCATGTACCTGTGGATGCGCGAACTTCCCGGGCGCGGCCGCGCCCGAT
GTCGCGTGACAAGGCGAAATGGCCGTATGATCATTTCACGAAGCTGGCAC
AGGCAGGCATGGTGATCACGAATCACCAGGCAAGGTTCAACAGCGTGGCG
ATGATATTGCCCAAGAAGGACACCTACCGAATGCTTGTCGACTACCACGC
AGCGCTGAAGTTGGCGATAGAAGAGGCGAGGGCCGAGGGTTTGCCGCCAA
ACAGAGTCACGGAGTTAAGAGAGCTAGTGATAAACCCCTACTTCGAGGCG
TTTCGGAGGACGCTGGGCAGGGACCCGCCGACAGACATGAAGCCGCTGTG
GGTGCATGTACCTGTGGATGCGCGAACTTCCCGGGCGCGGCCGCGCCCGA
TGTCGCGTGACAAGGCGAAATGGCCGTATGATCATTTCACGAAGCTGGCA
CAGGCAGGCATGGTGATCACGAATCACCAGGCAAGGTTCAACAGCGTGGC
GATGATATTGCCCAAGAAGGACACCTACCGAATGCTTGTCGACTACCACG
CA
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