mRNA_H-paniculata_contig11271.813.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig11271.813.1 vs. uniprot
Match: A0A6H5JGV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV5_9PHAE) HSP 1 Score: 122 bits (307), Expect = 4.360e-25 Identity = 168/660 (25.45%), Postives = 252/660 (38.18%), Query Frame = 2
Query: 2 VHYSLDTNSVTALPRLLDAGVLKVALRGASSSSPQVSAVCHDLLMSLSFNFPTAALMARDPEIRQELVKEARRRTQLAMDAAAHRHELMTDTARSIAELSEADKARGAQHTVEKETGPSLSTETRGLGSRSISVRGGRRHSPVKLPPENSAAQNDMDNGGDRTDMMSDSQGRSAESGNVDVHDDGAEGAHNSTEEMLFMSGDELKGTMLNACNALRALRNVLGAS--RLSLSEAGSSATDG-------SGGRRRSAPPTADKMPWPISMLYGSQLYVSDGERGDTHAG-----EPVME---------WPVDLSLVDSVAQLLVATSAFNAIQTAVPSLHHAPSSLHSDPDKQGKTGVRVVEMPIEAATLFWAVGPVFQEVRMETSGLLHEISSDTHMVELLMRRNYLDTLLTVGVPGQQGPAQVSYRNTVDAFINANIFRQRQDTVERRACSTVSNIVDGFKRRHPVTEMKNMVTKNWNEIAPGKLLDDLDDPTFEGGSETTPEPLGEQDRLYVDQVVEMNRLLTQPHIFMGDRQELRNSAFETAIVGFIWGYLRRRVAWIRSGEKFAVAKNGRVLQAAVVSSNGALRAACGSLALSLL---AGYRFYLRDQTLDREKGRHGTVVMSCARAALDLGVLYAVLRACPYSLLPVIAVNSLVG 1903
VH+S+ TALP+LLDAGV+ +ALRGA S + V+ VC+ +L LS N A M+RDP IR L+ E RR + +G H S A +D + G++ M G A+ G +GA A + + L T+ N +RA R + +S R + E G++ + SGGR + D++PWP LYG Y +G G + G + ++ WP+D LV +A+L+++ ++ + AV + + G+ +EAA S LL EIS +V LL+RR L L+ V AQ S T++ N +R+ E + +T + + + W E G L D F +E + P + +++++ SA +GF WG RR +AW R+GE F+V + V LRA G+ AL AG+R LD G GT+ MS AR +L LYA+LR CPYSLLP + V+++VG
Sbjct: 159 VHHSVLAVGPTALPKLLDAGVIGIALRGAESPNTHVAVVCYRILTVLSQNRHVARRMSRDPAIRAVLIGELRR------------------------------QVKGWNHA-------------------------------------GSGADDDHEAEGEKQQRM----GGLADGG------EGATAAARPPPATIVVDPIHLTLTLETLSNVMRASRRDINSSKRRSTAEEPGAAGLNRRFGAGGVSGGRTAAGEDEEDEVPWPFRFLYGENNY--EGAAGYAYGGGNEDDDTIIASVGGGISGPWPLDRKLVADIAELMLSAASARDSEGAV---------ARGEDAELGEV--------LEAAA---------------ASSLL-EISHHPELVGLLLRRRPLAGLVAVSQDSMMA-AQTSSEATLNI---CNAYRRCHGLPEASEPKASYEEI--------ITWVNKTLAQEWAESPSGDLDTSEADQAFVRQAERSTLPPLPYSSVLINEIM---------------------SAGVGMALGFPWGAARRWIAWRRAGETFSVLSTCSLPW---VLLRAGLRAGLGATALVATHGPAGFRPQASSWILDATSGSRGTLAMSAARELSELAYLYAILRLCPYSLLPSLVVSAVVG 670
BLAST of mRNA_H-paniculata_contig11271.813.1 vs. uniprot
Match: D7G608_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G608_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 9.280e-14 Identity = 113/402 (28.11%), Postives = 163/402 (40.55%), Query Frame = 2
Query: 716 GSGGRRRSA-PPTADKMPWPISMLYGSQLYVSDGERGDTHAGEPVMEWPVDLSLVDSVAQLLVATSAFNAIQTAVPSLHHAPSSLHSDPDKQGKTGVRVVEMPIEAATLFWAVGPVFQEVRMETSGLLHEISSDTHMVELLMRRNYLDTLLTVGVPGQQGPAQVSYRNTVDAFINANIFRQRQDTVERRACSTVSNIVDGFKRRHPVTEMKNMVTKNWNEIAPGKLLDDLDDPTFEGGSETTPEPLGEQDRLYVDQVVEMNRLLTQPHIFMGDRQELRNSAFETAI---VGFIWGYLRRRVAWIRSGEKFAVAKNGRVLQAAVVSSNGALRAACGSLALSLL---AGYRFYLRDQTLDREKGRHGTVVMSCARAALDLGVLYAVLRACPYSLLPVIAVNSLV 1900
GSGGR A D++PWP LYG Y +G G H G D ++ SV V + + + V + S S D +G E A L G V + + L EIS + +V LL+RR L L+ V AQ S T++ N +R+ + + + + E+ V K + G DLD E D+ +V Q E + L P+ + L N T + +G WG RR +AW R+GE F+ + +A +++ LRA G+ AL AG+R R LD G GT+ MS AR +L LYA+LR CPYSLLP + V+++V
Sbjct: 115 GSGGRTAVAGEDEEDEVPWPFRFLYGENNY--EGAAGYAHDGGN----EDDDTITPSVGG--VVSGPWPLDRKLVADIAELMLSAASARDSEGAVARG------EDAEL----GEVLEAAAASS---LREISHHSELVGLLLRRRPLVGLVAVSQDSMMA-AQASSEATLNI---CNAYRR------------CHGLPEASEPKASYDEVITWVNKTLAQEWAGSPSGDLD--------------TSEADQAFVRQA-ERSTLPPSPYSSV-----LINMQMSTGVGMALGVPWGAARRWIAWRRAGETFSALSRLSLPRALLLAG---LRAGLGTTALVATHGPAGFRPQARPWILDATSGSRGTLAMSAAREVSELAYLYAILRLCPYSLLPSLVVSAVV 456 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11271.813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11271.813.1 >prot_H-paniculata_contig11271.813.1 ID=prot_H-paniculata_contig11271.813.1|Name=mRNA_H-paniculata_contig11271.813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=601bp MSLSFNFPTAALMARDPEIRQELVKEARRRTQLAMDAAAHRHELMTDTARback to top mRNA from alignment at H-paniculata_contig11271:308..7941- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11271.813.1 ID=mRNA_H-paniculata_contig11271.813.1|Name=mRNA_H-paniculata_contig11271.813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7634bp|location=Sequence derived from alignment at H-paniculata_contig11271:308..7941- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11271:308..7941- >mRNA_H-paniculata_contig11271.813.1 ID=mRNA_H-paniculata_contig11271.813.1|Name=mRNA_H-paniculata_contig11271.813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3606bp|location=Sequence derived from alignment at H-paniculata_contig11271:308..7941- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |