mRNA_H-paniculata_contig11267.811.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: A0A6H5K3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H4_9PHAE) HSP 1 Score: 288 bits (737), Expect = 7.120e-84 Identity = 194/405 (47.90%), Postives = 235/405 (58.02%), Query Frame = 2 Query: 461 MCASAPPAEGFTPPGCLARV-------YSAERRLSAASSL--DGSDDGRRISQR-RSTGRRPSIFVAMPRNRGRRKRAVNSNSSGNSPAGLEMMSAVAPAPPAMDALEAAVAAATSTEQKSPQFVESLPRPPRSAKQKP--RFDESARYAERPSRLNV---LREDLAGVDLAKAIATEERLRNPLAVTASRGNRGRXXXXXXXXRKNVVDGPLKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAVGIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARIK 1630
MCASAPPAEGFTPP CLARV YSAERRL+A S DG GRR + R R P A+P RR+ S A M+ AP+ A + +A AA E+ +++L PP P D+S Y E + D V L K + R+ XXX L FYL+ + KV LLKPHEEI+LGRQIQ G+ YE RDHLQL +PT E+WA A+G++ E L++EL RA KAK AMLAANLRLVVS+AKRYR+ L+F DLIQEGTFGLVKA E+FDPERGFKFSTYATWWIKQSI RG++DQ R IRLPVHVH+ + +RKAT E+TD G P+DE+L L+ S RI+
Sbjct: 1 MCASAPPAEGFTPPVCLARVCGAGDAFYSAERRLAAGSGAGRDGGSGGRRGTMRGREAAAAPVARGALPAPPTRRR----------STAARWMIQHPAPSRSAATRMMSAAVAAEPVEE-----LDTLRPPPPQLPGMPFDMRDDSEFYLEMERKKEAGPTYTRDSDMVGLGKVSTKKSAKRD-----------------GXXXXXXXXXDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPTEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQ 373
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: D8LNI6_ECTSI (Chloroplast RNA-polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI6_ECTSI) HSP 1 Score: 260 bits (664), Expect = 3.380e-74 Identity = 126/193 (65.28%), Postives = 153/193 (79.27%), Query Frame = 2 Query: 1052 LKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAVGIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARIK 1630
L FYL+ + KV LLKPHEEI+LGRQIQ G+ YE RDHLQL +P+ E+WA A+G++ E L++EL RA KAK AMLAANLRLVVS+AKRYR+ L+F DLIQEGTFGLVKA E+FDPERGFKFSTYATWWIKQSI RG++DQ R IRLPVHVH+ + +RKAT E+TD G P+D++L L+ S RI+
Sbjct: 51 LAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDDELAEHLEVSAVRIQ 243
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: A0A835ZES3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA) HSP 1 Score: 214 bits (546), Expect = 3.940e-60 Identity = 102/195 (52.31%), Postives = 140/195 (71.79%), Query Frame = 2 Query: 1046 GPLKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAVGIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARIK 1630
G L +YL M + LLKP EE+ LGR IQLG+ +EA ++ L + P+ +WA +G++ + L + R+ +AK M++ANLRL VSIAKRY+ GL SDL+QEG+FGL+KA ERFDP++GFKFSTYATWWIKQSI R ++DQ R IRLPVHVH+L+ +I++AT+EL+ G P+DE+L LQ +I+
Sbjct: 56 GALSWYLSRMSAIDLLKPEEEVTLGRHIQLGLEWEAAKEELAVRLERQPSRAEWAAHMGVDEDTLKLIMIRSSRAKTTMISANLRLAVSIAKRYKHRGLALSDLVQEGSFGLMKAAERFDPDKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDLLNSIKRATRELSLELGRTPTDEELSLRLQVPTQKIE 250
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: A0A835ZBY3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY3_9STRA) HSP 1 Score: 207 bits (527), Expect = 5.610e-58 Identity = 102/192 (53.12%), Postives = 136/192 (70.83%), Query Frame = 2 Query: 1052 LKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAVGIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARI 1627
L+ K M + LLKP EEI L RQI+LGI +EA R+ L + P+ +WA +G++ + L + R+ +AK M++ANLRL VSIAKRYR GL DLIQEG+FGL+KA ERFDPE+GFKFSTYATWWIKQSI R ++DQ R IRLPVHVH+ + ++++AT+EL+ G P+DE+L LQ + +I
Sbjct: 17 LQHLFKRMTSIDLLKPEEEIALARQIKLGIEWEAAREELAMRLERTPSLGEWAAHMGVDEDTLKLIMIRSARAKSTMISANLRLAVSIAKRYRRRGLALPDLIQEGSFGLMKAAERFDPEKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDFLNSVKRATRELSLELGRHPTDEELAMRLQVTAQKI 208
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: A0A7S2KJI8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJI8_9STRA) HSP 1 Score: 204 bits (519), Expect = 5.150e-56 Identity = 98/192 (51.04%), Postives = 137/192 (71.35%), Query Frame = 2 Query: 1052 LKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAVGIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARI 1627
+ YLK MG LL+ EE+IL R IQ+ I++E VR+ L+ PT +WA AV ++V L R++ R+++AK A++ +NLRLVVSIAKRY G+ F DL QEGT GL +ATE+FDPERGF+FSTYATWWIKQ I R ++DQ R IRLPVHVH+ + +R+ TKEL++ G P+DE++ + + +V ++
Sbjct: 90 ISHYLKTMGNHDLLRREEEVILARHIQILIKWEEVREELESKLIRPPTYAEWAVAVNLDVPGLKRQIRRSQRAKAALIESNLRLVVSIAKRYVNRGMNFQDLCQEGTLGLTRATEKFDPERGFRFSTYATWWIKQGIMRAIADQSREIRLPVHVHDQLNGVRRVTKELSELLGRDPTDEEIAEKAKITVQKL 281
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA) HSP 1 Score: 200 bits (509), Expect = 8.990e-54 Identity = 94/193 (48.70%), Postives = 144/193 (74.61%), Query Frame = 2 Query: 1052 LKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAVGIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARIK 1630
L ++ K++G+ +LL+ EE++L R++Q I +E VRD L+ PT E+WA +VG++ + L R+L R + AK+AM+++NLRLV+SIAKRY+ GL +DLIQEG+ GLV+A E+FDPE+GFKFSTY+TWWIKQ+I R ++DQ R IRLPVH+H+L+ T++K T+EL + G P++E+L + + +++
Sbjct: 160 LGWFFKSIGQHSLLRAEEEVLLARKVQAMIGWEDVRDGLKDQLGRPPTLEEWASSVGMQPDELRRKLLRGQSAKKAMISSNLRLVISIAKRYQKRGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRAIADQSRTIRLPVHIHDLLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLR 352
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA) HSP 1 Score: 200 bits (509), Expect = 1.000e-53 Identity = 99/203 (48.77%), Postives = 144/203 (70.94%), Query Frame = 2 Query: 1028 RKNVVDGPLKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAVGIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRY--RWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARIK 1630
R+ VD +K YLK+MG LL EE++L R +QL +++E VR+ L++ + PT +WA AVG++ ++L R++ R+++AK AM+ +NLRLV+SIAKRY R L+ DL QEG+ GLVKA E+FDPERGF+FSTYATWWIKQS+ R ++DQ R IRLPVH+H+ + T+RK +ELT G P+ E++ +V +++
Sbjct: 167 RETGVD-TMKDYLKSMGNHDLLTAQEEVLLARHVQLLLKWEEVRERLEIELARPPTYAEWAAAVGVDTKKLKRQIRRSQRAKAAMIESNLRLVISIAKRYTSRTNTLSVQDLCQEGSLGLVKAVEKFDPERGFRFSTYATWWIKQSVMRAIADQSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEEIAEAAGITVDKLQ 368
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: A0A7S2SH06_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SH06_9STRA) HSP 1 Score: 197 bits (502), Expect = 1.910e-53 Identity = 97/195 (49.74%), Postives = 138/195 (70.77%), Query Frame = 2 Query: 1052 LKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAV--GIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARIK 1630
+K+YLK MG LLK +EEIIL R+IQ+ I++E R+ L+ + PT +WA AV G+ V + +++ R+ +AK A+ +NLRLV+SIAK+Y+ GLTF DL QEGT GL +A E+FDPERGF+FSTYATWWIKQ I R ++DQ R IRLPVH+H+ + IRKA ++L + G P+ E+L ++ + +I+
Sbjct: 168 MKYYLKTMGNHELLKKNEEIILAREIQILIKWETQREELESSLMRPPTYAEWAAAVQKGMTVPEMKKQIRRSLRAKTALTESNLRLVISIAKKYQNRGLTFQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQGIMRAIADQARTIRLPVHIHDQLNMIRKAERDLHNELGRDPTKEELSHKINLTPEKIE 362
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: A0A6H5KA31_9PHAE (RNA_pol_sigma70 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KA31_9PHAE) HSP 1 Score: 203 bits (516), Expect = 1.700e-52 Identity = 103/194 (53.09%), Postives = 139/194 (71.65%), Query Frame = 2 Query: 1049 PLKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAVGIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARIK 1630
PL Y K + K+ LLKP EE++LGRQIQ G++ E VRD L+ + A P+ E+WA + + + L+REL A +AK+ M++ANLRLVVS+A+ YR GL F DLIQEGT GLVKA E+F+PE GF+F TYA WWIK+SI G+++Q R IRLP VH +++IRK T ELT G P+DE+LG +L +V +I+
Sbjct: 239 PLNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETAHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFNPEMGFQFYTYAQWWIKKSILTGIANQSRVIRLPTQVHAFLSSIRKYTYELT-VDGRVPTDEELGDKLGATVEKIQ 431
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: A0A7R9ZH78_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZH78_9STRA) HSP 1 Score: 193 bits (491), Expect = 1.530e-51 Identity = 98/211 (46.45%), Postives = 141/211 (66.82%), Query Frame = 2 Query: 1052 LKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAV--GIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARI----KVSTVARTLECAL 1666
+K+Y+K M LLK +EEIIL R+IQ+ + +E R+ L+ PT +WA + G+ V + R++ R+ +AK A+ +NLRLV+SIAKRY+ GL F DL QEGT GL +A E+FDPERGF+FSTYATWWIKQSI R ++DQGR IRLPVH+H+ + IRK ++L++ G PS+E++ + ++ KVS + ++E L
Sbjct: 125 MKYYMKTMANHDLLKKNEEIILAREIQILVAWEKKREDLEANLMRPPTYAEWAEDIREGMTVPEMKRQIRRSLRAKSALTESNLRLVISIAKRYQNRGLNFQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQGRTIRLPVHIHDQLNVIRKVERDLSNELGREPSNEEVAGRVDLKPEKVEFLKKVSKHSLSMETQL 335 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11267.811.1 >prot_H-paniculata_contig11267.811.1 ID=prot_H-paniculata_contig11267.811.1|Name=mRNA_H-paniculata_contig11267.811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=421bp MCTSRRWRVCVVGAMCASAPPAEGFTPPGCLARVYSAERRLSAASSLDGSback to top mRNA from alignment at H-paniculata_contig11267:285..5070- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11267.811.1 ID=mRNA_H-paniculata_contig11267.811.1|Name=mRNA_H-paniculata_contig11267.811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4786bp|location=Sequence derived from alignment at H-paniculata_contig11267:285..5070- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11267:285..5070- >mRNA_H-paniculata_contig11267.811.1 ID=mRNA_H-paniculata_contig11267.811.1|Name=mRNA_H-paniculata_contig11267.811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2526bp|location=Sequence derived from alignment at H-paniculata_contig11267:285..5070- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |