mRNA_H-paniculata_contig11257.805.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11257.805.1
Unique NamemRNA_H-paniculata_contig11257.805.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11257.805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11257contigH-paniculata_contig11257:164..331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size144
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928829.3877432-UTR-H-paniculata_contig11257:163..1871622928829.3877432-UTR-H-paniculata_contig11257:163..187Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11257 164..187 +
1691480637.0572083-UTR-H-paniculata_contig11257:163..1871691480637.0572083-UTR-H-paniculata_contig11257:163..187Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11257 164..187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928829.3989289-CDS-H-paniculata_contig11257:187..3311622928829.3989289-CDS-H-paniculata_contig11257:187..331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11257 188..331 +
1691480637.0694885-CDS-H-paniculata_contig11257:187..3311691480637.0694885-CDS-H-paniculata_contig11257:187..331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11257 188..331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11257.805.1prot_H-paniculata_contig11257.805.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11257 188..331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11257.805.1

>prot_H-paniculata_contig11257.805.1 ID=prot_H-paniculata_contig11257.805.1|Name=mRNA_H-paniculata_contig11257.805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
MAYECPVTQGKAPRLNYFSTPTIDYLGRPMGTATENNALTIMDNMVS*
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mRNA from alignment at H-paniculata_contig11257:164..331+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11257.805.1 ID=mRNA_H-paniculata_contig11257.805.1|Name=mRNA_H-paniculata_contig11257.805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig11257:164..331+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACATTCCAGGTTCCGCACGATCATGGCATATGAGTGCCCCGTTACACA
AGGAAAGGCGCCTCGTCTGAACTACTTCTCGACCCCAACGATCGACTACT
TGGGTAGGCCCATGGGCACGGCAACTGAGAACAACGCGTTGACAATCATG
GACAACATGGTGAGTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11257:164..331+

>mRNA_H-paniculata_contig11257.805.1 ID=mRNA_H-paniculata_contig11257.805.1|Name=mRNA_H-paniculata_contig11257.805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig11257:164..331+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATATGAGTGCCCCGTTACACAAGGAAAGGCGCCTCGTCTGAACTA
CTTCTCGACCCCAACGATCGACTACTTGGGTAGGCCCATGGGCACGGCAA
CTGAGAACAACGCGTTGACAATCATGGACAACATGGTGAGTTAGATGGCA
TATGAGTGCCCCGTTACACAAGGAAAGGCGCCTCGTCTGAACTACTTCTC
GACCCCAACGATCGACTACTTGGGTAGGCCCATGGGCACGGCAACTGAGA
ACAACGCGTTGACAATCATGGACAACATGGTGAGTTAG
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