mRNA_H-paniculata_contig11254.804.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11254.804.1
Unique NamemRNA_H-paniculata_contig11254.804.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig11254.804.1 vs. uniprot
Match: D8LPY5_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY5_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 1.600e-12
Identity = 52/128 (40.62%), Postives = 62/128 (48.44%), Query Frame = 3 
Query:  246 VGRQGWYNQATGQTTYQMGGMYGGYTGTPMVAPVQQMPM----YQPQMPAVPMGYMPQ-------------VPQ-----------------------QAQGSMVGWQTAFDRTGRRYYYNPATGQTAY 509
            +GR GWYN +TGQTTYQM G Y      PM+AP  Q+P+    YQ     VPMGYM Q             VPQ                       Q   +  GWQ  FDR+GRRY+YNP+TGQ+ Y
Sbjct:    1 MGRHGWYNPSTGQTTYQMYGAYN--AANPMMAPQAQVPVQPQVYQQPPMQVPMGYMTQPQITAPMGQIPQMVPQXXXXXXXXXXXXXXXXXXXXXXXQQFAAPPGWQPMFDRSGRRYFYNPSTGQSVY 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11254.804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPY5_ECTSI1.600e-1240.63WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11254contigH-paniculata_contig11254:505..5156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1072
Cds size723
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11254.804.1prot_H-paniculata_contig11254.804.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11254 505..4808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928828.973959-CDS-H-paniculata_contig11254:504..6901622928828.973959-CDS-H-paniculata_contig11254:504..690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11254 505..690 +
1691480636.9972863-CDS-H-paniculata_contig11254:504..6901691480636.9972863-CDS-H-paniculata_contig11254:504..690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11254 505..690 +
1622928828.9887798-CDS-H-paniculata_contig11254:1454..15301622928828.9887798-CDS-H-paniculata_contig11254:1454..1530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11254 1455..1530 +
1691480637.0158405-CDS-H-paniculata_contig11254:1454..15301691480637.0158405-CDS-H-paniculata_contig11254:1454..1530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11254 1455..1530 +
1622928829.0068655-CDS-H-paniculata_contig11254:3655..38191622928829.0068655-CDS-H-paniculata_contig11254:3655..3819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11254 3656..3819 +
1691480637.03095-CDS-H-paniculata_contig11254:3655..38191691480637.03095-CDS-H-paniculata_contig11254:3655..3819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11254 3656..3819 +
1622928829.0230088-CDS-H-paniculata_contig11254:4511..48081622928829.0230088-CDS-H-paniculata_contig11254:4511..4808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11254 4512..4808 +
1691480637.0395317-CDS-H-paniculata_contig11254:4511..48081691480637.0395317-CDS-H-paniculata_contig11254:4511..4808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11254 4512..4808 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928829.0415514-UTR-H-paniculata_contig11254:4808..51561622928829.0415514-UTR-H-paniculata_contig11254:4808..5156Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11254 4809..5156 +
1691480637.0469809-UTR-H-paniculata_contig11254:4808..51561691480637.0469809-UTR-H-paniculata_contig11254:4808..5156Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11254 4809..5156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11254.804.1

>prot_H-paniculata_contig11254.804.1 ID=prot_H-paniculata_contig11254.804.1|Name=mRNA_H-paniculata_contig11254.804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=241bp
KLPTLSVITFTEVSSPNPCSSTRPTGSLLSALAHPFGKDWRVRSISEQRL
GRNLIFKRRETNSVKPLWRVSLITHGFLFKTKLVGKAGIIKPQGRRHTKW
AGCTVVIRAPQWWHPCSRCRCINRRCRRFQWATCHRCLNKHKVPWLDGKL
LLTAQEGATTITRPLGRPRTTSIWGLKFEGINREAGKRWQADGTTRQLLS
RKAFYLKSIPNVLLRHVLRIVLYGSVAVRRYISTAVGGNL*
back to top

mRNA from alignment at H-paniculata_contig11254:505..5156+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11254.804.1 ID=mRNA_H-paniculata_contig11254.804.1|Name=mRNA_H-paniculata_contig11254.804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4652bp|location=Sequence derived from alignment at H-paniculata_contig11254:505..5156+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACTGCCAACTCTCAGTGTCATTACATTCACGGAAGTGTCAAGCCCTAA
CCCCTGCTCCTCAACCCGCCCGACCGGCTCTCTACTGAGCGCACTAGCAC
ATCCTTTCGGGAAAGACTGGAGAGTGCGTTCTATATCCGAGCAGCGGTTA
GGAAGAAACTTAATTTTCAAGCGGAGGGAAACAAATGTGAGTTCTATTTG
TTCACCAGGTTGCACCACAGACGGAGGCGCTCTTTTTTGTTTTGCACTTG
GGGTCTTGGGAGTTGACAAGTGACGACACAACAAATGCATATTCTACGTC
TTGAATAACGATTTGGTGGTGTCGCTACGCGGATGCAGTGTGATATTACT
TGTCCACGTTTCGGGTCCACCAGTTCATCAAAGGTTTGGGTGCAGCATCA
AAACACCTGGAAGTCTCAAGTGTTTGCATTTTTGTGTTGCCTCATAGTGG
CGGCAGACCCCAAAAAAACGGCCGAAAGGGGCTCTCGTGCCACCGCACCC
CTAGGACAGGTGCTGAAGACAAAGCTGCTAGAACTGCCGTGATTATAGAT
GAGCACCAGCACGCATGAGCCGAGGATGGGGTAAGATTTACCTCCATACT
GACGCCAGCATAAAGTATCCTTAATTGGTGTATAGAATTAGGGGGCTGGA
CAACTGACAGTAGTAGCAGAACAACTGACAACCTACAGACGGTGGCCCGT
TAAGGTGTTGAGGTAGTATTATACAACAATACAGACATTTCGTTTACAGA
GTCAAAATTTGTTTTTCCGATTTCCCAGACTAATTGAAAATGAGTCCCAG
GATAGAGGGCCGAGTTGGCGAAACACGAGTGCGCACCGTCGATGTAGCGT
CACCTTCGAATCCCATCATGTCAAACAATGCTGCTGCAACATGCTATCAT
GCTTGTGCTTGCTGCGTCGCCCGCCCCTGCCCGCCCCATCCACGTTGCAG
TCAGTAAAACCATTATGGCGGGTGTCTTTAATCACACATGGATTCCTTTT
CAAGACCAAGTTGGTCGGCAAGGCTGGTGAGTGCTGCCCAGCAGTCTCGA
TTCTGTAACCTGTGATTTGTGCTGACGGATGACTCTACATTCTGTATTGT
TGTGATACTACCTACTACTGTTGCTGACAATACAGCACCCAAAACTAGCG
GCCAAAAACTGTGAGGGAACAGTTGCAGTCCTTTGGTCGACTGGGCTGCA
ATGAAATTCGCCACCACAGCACCGGGATCCAATCGTCCGCCCACTGCAAA
AATGAACACTTCACCATGGAAGTCGAGGATTCATGACCGCTGGAAACTGA
GGTCTTACAAAATTGACCTGCGAGCTCGATCGAGTCGGGCATAAACGTAT
TGGCAATGAATTTGCTCGATTTTTTCAATACACCCCGCGACACGATAAAT
AGTTAAGAATGACCTTTGTGTGGGCGAGCACGATTACAATACAGAAACCT
AGTGCGGACGCAGATTGTCCAGGGACTGGAGAAACCTGGACAATCTTTTG
TTAGCAGCTGTGGTCGACATACATTTAGCCTAGTGCGGTGCGTTGTGTTG
AAAGTGTTGCCAAAATGCTTCGCTGAACAAATGGGTGAAATATTCAAACA
GGTAGTTACGCAGCTGTAATAAGTTTGCCACTGACTTGTCTATTTTGTTC
TGTTTTTGCTTTCGGGGGGTCGCATCTGGTGCTGCCCCATGAAGTTTTAA
ATGAACTCTTGGCCGCACTTTTTCCTTCGCGACTAGTCGAGGTAAGCCAT
CATCGCGGTGTGTCTCAATCTTATTGGAGAGTACAGAGAATGCCTGCATA
TGAAGAGTATGTTTTATCAAGATCTTGCTCGGTGGTGACAGAGCGCTCAT
CTTTTTGCGTAGACTATCCATTAACCCACAAAAGTTGACGCTAACTGGTT
AATTTAAAAAGCATGACCAAAATTTACAATCAGAATTTGAATTTCTATCG
AAATCATTTGAGGTTATTGTTATACTTGATCAAAAGTGAGGTTTTGACTG
TAAATTGTGGTCACCACCCCAAATGGCCTAATGATTGGATTTTTCTCTCT
TTCTCCATCTCTTCCTGCGGTTCTTTCGATATCGTGCATTCTTACACGCG
AACCAACCCTTGTGTGAAAGAGCAACCGGTTGTGCTGCTCTCTTGTGGAT
TTGGCACTCGAGCAACGAATTAGCCTTCTTCGTGCACTCTATTTCGAGCA
AACTATTCGGACATACTGTAACAAAGATGACGTAGCTCTGTCCAGCGCGC
GCTAGATGACATGCATAACAAGGTATTGATTGTCTGTCCTGTGCCTGCCG
TCCATCCGAGGCGCAGTTGTTCACTTACTTGATCGGTCACACTTCCGATG
CCTTCACGTCCCCACCCGTGACATGAATGTGCATGTAACCTCCGCCTGTA
GGTGAAATGCTATAAAGCGAAGTCGGCGGTCACCACGCGTCATAGTTTAT
GCCTTTTGAGGTCAATGAGTTGACTGGGTGAATAGCACACAGCACAAAAA
GGTAACTTTGCGTGTTTTTGCACAGAACGACTACATACATGCAGCGCTCG
ATATTAGTTTGTTAAATGCATTTTCTGTTCTGAAACAGTCTTCCACGCTA
TTTACAACGTCAAGAGAAGATTAATATTGGGGCCGGTCCTCTAGTGATGT
GTGTGTGGTTGGACTCGAGCGTGCAATACGAGTGTGTTCAAGTCACGTCG
CGGGACGTACTGTATTTGTACAGTCAATATTTGAAACAATGAAGAGAGGT
TGGATAGGTTGTGTTGATGCTGTCTTGTGGTTGGTGTTTTTTTTTCAAGG
GGAACGTGACAACCATTACCATTTTTTATTATCGAGGTACATGCGACTCC
TCTTCAACGTTTGGAGCAGCAGATGCAAATAATATATGAAAAACACTTAC
GAAAATACTCGGTACATGGCCGGTCCATAGGCTTCATCACTGGACTGTCT
AGAACTATCCATGGTTTCGGAAGCATTAATGGTTAGTCGCGCTACGCTGT
ACCCTCCAGAAATTGGCACCCGGAGCGTTGCCACGCTGCAGCGTTTGAGA
GGTCACGTCAGTAGGACCCGATTCGACACTGTTTAGGCTATGGAATGTCT
TGTATAGTTCGTGTGATTAGGTGTGTTTTCGTCTGTGTCGTGTAATTGCA
GGTATAATCAAGCCACAGGGCAGACGACATACCAAATGGGCGGGATGTAC
GGTGGTTATACGGGCACCCCAATGGTGGCACCCGTGCAGCAGATGCCGAT
GTATCAACCGCAGATGCCGGCGGTTCCAATGGGCTACATGCCACAGGTGC
CTCAACAAGCACAAGGTCAGTGGCAGAGCTGTGCAATCATACTTGTTGCA
AGGCATCATTAAGGGAAGAGGGCAAGGGGGAGCATACGCTAGCGTATATT
AGCTACGGTTACCCATGACTGGATACATGTGTGTGGTGTGGTTACGCCAT
TCTTTCTTCTCATCGCTATTTGCATAATATATTGTCAACACCCCTCCGGA
TCGAGAAGTGAAGGTGAGATGGTCTCCCCCAAGCGCTGTGTCTCAACCCC
CGGTGTTCGCGAAGCACTCACCACCTTCCATCGACCACATCAGTATTCAA
CCGATAGCCCACGGGCAGAGCGGTCTGTCCGAGTACCTTCGACAACCGTC
TCAGTATGTCTGATATAACTGTAACGCACCCCAAAAATCAACAACTGGCG
TGGTGGATTTTCCGTTGTTTTCGTTTATAGAAAATACAAGATTCGACATA
TTGTAGAATTTAAAATGAGACGTGGACCTGCGCATGTTGCTAGTGTTGGA
GGTCAGCCAGGAAGGCCGTATTGGTTGTCTTCTGTTTTTCTCTCTGTTGG
TTGTGGGTGTTGAACTTCAAGCTGCATTCCGCACATACGTTTTCATGTTG
ACTAAAAATGCACCATGTGTCGGCACTGAGTTTGTAGATTTTTTTTTCGT
GCCTTTTTGGGCTTTTTCCCCCCCTCCATACACCTACTACAACCCCTATC
TCCCCAGGTTCCATGGTTGGATGGCAAACTGCTTTTGACCGCACAGGAAG
GCGCTACTACTATAACCCGGCCACTGGGCAGACCGCGTACTACTAGTATT
TGGGGACTCAAATTCGAGGGCATTAATCGGGAGGCCGGCAAGAGATGGCA
AGCTGATGGGACCACAAGGCAGCTGCTCTCCAGAAAAGCATTTTATTTAA
AGAGCATTCCCAACGTGCTTTTGCGACATGTCTTGCGGATTGTATTATAC
GGTTCGGTTGCCGTGCGACGCTACATAAGCACAGCGGTGGGGGGCAATCT
TTAGGCAGTATTTCACTGGATGGGCGAATGAAGAACCCTTGGTATGCTAG
CGGACTAACTGTGGCGAGCGTGCGAGATTTGGAAAGCAACGACGGCGTAG
GCACGAGCATTTCGTTTTTTATTCCCGATTTGTCACCTTTTTTTTTTGTA
TAAGCTGTTTTGGACTGGCCTGTGGTGACTTGACTGTTGGTGTCCCTTGC
CCGACGGACAAAGCGAAGGAATTTTGCTAAAACGTCGAAATGGAGGCTGG
TGGGTGTTGTACGTGATGTCGAAGGCTCAAGTATGCAGCGTTGTGACATG
ACGGAAAGACATGGCACTACTGTAGCAGGTGGAGGACCGCGGTGTGTTAT
TT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11254:505..5156+

>mRNA_H-paniculata_contig11254.804.1 ID=mRNA_H-paniculata_contig11254.804.1|Name=mRNA_H-paniculata_contig11254.804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1446bp|location=Sequence derived from alignment at H-paniculata_contig11254:505..5156+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACTGCCAACTCTCAGTGTCATTACATTCACGGAAGTGTCAAGCCCTAA
CCCCTGCTCCTCAACCCGCCCGACCGGCTCTCTACTGAGCGCACTAGCAC
ATCCTTTCGGGAAAGACTGGAGAGTGCGTTCTATATCCGAGCAGCGGTTA
GGAAGAAACTTAATTTTCAAGCGGAGGGAAACAAATAAACTGCCAACTCT
CAGTGTCATTACATTCACGGAAGTGTCAAGCCCTAACCCCTGCTCCTCAA
CCCGCCCGACCGGCTCTCTACTGAGCGCACTAGCACATCCTTTCGGGAAA
GACTGGAGAGTGCGTTCTATATCCGAGCAGCGGTTAGGAAGAAACTTAAT
TTTCAAGCGGAGGGAAACAAATTCAGTAAAACCATTATGGCGGGTGTCTT
TAATCACACATGGATTCCTTTTCAAGACCAAGTTGGTCGGCAAGGCTGTC
AGTAAAACCATTATGGCGGGTGTCTTTAATCACACATGGATTCCTTTTCA
AGACCAAGTTGGTCGGCAAGGCTGGTATAATCAAGCCACAGGGCAGACGA
CATACCAAATGGGCGGGATGTACGGTGGTTATACGGGCACCCCAATGGTG
GCACCCGTGCAGCAGATGCCGATGTATCAACCGCAGATGCCGGCGGTTCC
AATGGGCTACATGCCACAGGTGCCTCAACAAGCACAAGGTATAATCAAGC
CACAGGGCAGACGACATACCAAATGGGCGGGATGTACGGTGGTTATACGG
GCACCCCAATGGTGGCACCCGTGCAGCAGATGCCGATGTATCAACCGCAG
ATGCCGGCGGTTCCAATGGGCTACATGCCACAGGTGCCTCAACAAGCACA
AGGTTCCATGGTTGGATGGCAAACTGCTTTTGACCGCACAGGAAGGCGCT
ACTACTATAACCCGGCCACTGGGCAGACCGCGTACTACTAGTATTTGGGG
ACTCAAATTCGAGGGCATTAATCGGGAGGCCGGCAAGAGATGGCAAGCTG
ATGGGACCACAAGGCAGCTGCTCTCCAGAAAAGCATTTTATTTAAAGAGC
ATTCCCAACGTGCTTTTGCGACATGTCTTGCGGATTGTATTATACGGTTC
GGTTGCCGTGCGACGCTACATAAGCACAGCGGTGGGGGGCAATCTTTAGG
TTCCATGGTTGGATGGCAAACTGCTTTTGACCGCACAGGAAGGCGCTACT
ACTATAACCCGGCCACTGGGCAGACCGCGTACTACTAGTATTTGGGGACT
CAAATTCGAGGGCATTAATCGGGAGGCCGGCAAGAGATGGCAAGCTGATG
GGACCACAAGGCAGCTGCTCTCCAGAAAAGCATTTTATTTAAAGAGCATT
CCCAACGTGCTTTTGCGACATGTCTTGCGGATTGTATTATACGGTTCGGT
TGCCGTGCGACGCTACATAAGCACAGCGGTGGGGGGCAATCTTTAG
back to top