mRNA_H-paniculata_contig11241.795.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig11241.795.1 vs. uniprot
Match: D7FL48_ECTSI (Leucine rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI) HSP 1 Score: 213 bits (542), Expect = 7.970e-63 Identity = 115/205 (56.10%), Postives = 143/205 (69.76%), Query Frame = 1 Query: 1 VYIDGILITTWTSSGTTTLFEGVDLSGSNPGQAVELRGVLADSDWLSISEVEILVDDGEEPITADAVEAGTVGTVTVTATLYDANLSVAGGCNPDGCVASLTRDGGFGEQSRWSCSPQLGSGEKCVISYDLGAVRNLSELRLAMYEGATRTRSVDIFVDGVFATTWQSSGTTDALESIDISGVSGEIVEISGL-LAPSEWLSIHE 612 + +DG +WTSSGTT+ FE +DL G+ VEL G L D +WLSI EVEILVDDG++ D VEAG +GTVT TA LYD L GC+P+GC A+LTRDG E SRWSC+P+LG C ISYDLGA ++ EL+LAMY+G TR R+V + VDG TTW SSGTT ES+D+SG +G++V I+G L+ SEWLSI E Sbjct: 116 ISVDGNYAFSWTSSGTTSDFESIDLGVD--GKVVELVGDLQDWEWLSILEVEILVDDGDDGSEVDVVEAGELGTVTATADLYDDRLGDTVGCDPEGCTAALTRDGDMSEDSRWSCAPELGG--LCSISYDLGAEYSIDELQLAMYQGDTRVRTVGVAVDGDLVTTWTSSGTTSGFESVDMSGATGQVVTITGAELSDSEWLSIVE 316
BLAST of mRNA_H-paniculata_contig11241.795.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE) HSP 1 Score: 212 bits (540), Expect = 1.770e-62 Identity = 120/209 (57.42%), Postives = 142/209 (67.94%), Query Frame = 1 Query: 1 VYIDGILITTWTSSGTTTLFEGVDLSGSNPGQAVELRGVLADSDWLSISEVEILVDDG----EEPITADAVEAGTVGTVTVTATLYDANLSVAGGCNPDGCVASLTRDGGFGEQSRWSCSPQLGSGEKCVISYDLGAVRNLSELRLAMYEGATRTRSVDIFVDGVFATTWQSSGTTDALESIDISGVSGEIVEISGL-LAPSEWLSIHE 612 +Y+DG ITTWTSSGTTT FE V L + GQ VEL G L D +WLSI EVEI VDDG + + D VEA +GTVT TA LYD L GC+P+GC A+LTRDG E SRWSC+P+LG C ISYDLGA N+ +LRL MY G +RTR+VD+ VDG TTW SSGTT ES+D+SG G++V ISG A S+WLSI E Sbjct: 115 MYVDGRHITTWTSSGTTTGFESVLLM--DQGQVVELVGDLNDDEWLSILEVEIDVDDGIVDDDTVVVLDVVEAAEMGTVTATADLYDTRLGDTVGCDPEGCTAALTRDGDMSEGSRWSCAPKLGG--PCSISYDLGAEYNVEQLRLRMYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGSNQADSQWLSIIE 319
BLAST of mRNA_H-paniculata_contig11241.795.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI) HSP 1 Score: 218 bits (554), Expect = 5.670e-62 Identity = 116/211 (54.98%), Postives = 151/211 (71.56%), Query Frame = 1 Query: 1 VYIDGILITTWTSSGTTTLFEGVDLSGSNPGQAVELRGVLADSDWLSISEVEILVDDGEEPITAD-------AVEAGTVGTVTVTATLYDANLSVAGGCNPDGCVASLTRDGGFGEQSRWSCSPQLGSGEKCVISYDLGAVRNLSELRLAMYEGATRTRSVDIFVDGVFATTWQSSGTTDALESIDISGVSGEIVEISGLLAPSEWLSIHE 612 V +D L+TTWTSSGTT E +DLSG++ GQ VE+ GVL DS+WLSI EVEI+V+DG++ D AVEA T+G+VTV A+LYD +L+V GGC+P GCVA TRDG SRWSC+P+LG +C ISYDLG +L E+RLAM++G R ++++ VD TW SSGTTD E+ID+SG SG+++EI+G+L SEWLSI E Sbjct: 285 VRVDDTLVTTWTSSGTTDDLEAIDLSGTS-GQTVEITGVLDDSEWLSIVEVEIMVEDGDQGSGDDDTTTNTSAVEASTLGSVTVGASLYDPSLAVDGGCDPSGCVADNTRDGDLSAASRWSCAPKLGG--ECSISYDLGTAYDLDEVRLAMFKGTERQVTMEVRVDDALVITWTSSGTTDGFEAIDMSGTSGQVLEITGVLDDSEWLSIIE 492
BLAST of mRNA_H-paniculata_contig11241.795.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE) HSP 1 Score: 214 bits (546), Expect = 7.100e-61 Identity = 113/208 (54.33%), Postives = 147/208 (70.67%), Query Frame = 1 Query: 1 VYIDGILITTWTSSGTTTLFEGVDLSGSNPGQAVELRGVLADSDWLSISEVEILVDDG----EEPITADAVEAGTVGTVTVTATLYDANLSVAGGCNPDGCVASLTRDGGFGEQSRWSCSPQLGSGEKCVISYDLGAVRNLSELRLAMYEGATRTRSVDIFVDGVFATTWQSSGTTDALESIDISGVSGEIVEISGLLAPSEWLSIHE 612 + ID + T WTSSGTT FE +++ + G+ +E+ GVL DS+WLSI EVEILVDDG ++ + VEAG++G VT T+ L+D L + GC+P GC A LTRDG ++SRWSC+P LG C ISYDLGAV +LS+LRLA+Y GATR R+VD+ VDG ATTW SSGTTD E+ID+SG SG+ + ++G+L EWLSI E Sbjct: 116 INIDNLPYTVWTSSGTTAGFETIEVDTT--GRWIEIVGVLEDSEWLSIMEVEILVDDGVTDTDDVVDTTEVEAGSLGIVTATSALFDPRLGDSNGCDPAGCTAELTRDGDVSDESRWSCAPSLGG--TCSISYDLGAVYDLSKLRLALYNGATRVRTVDVSVDGSLATTWTSSGTTDGFENIDLSGYSGQDITVTGVLDNLEWLSIKE 319
BLAST of mRNA_H-paniculata_contig11241.795.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE) HSP 1 Score: 213 bits (542), Expect = 2.450e-60 Identity = 113/208 (54.33%), Postives = 146/208 (70.19%), Query Frame = 1 Query: 1 VYIDGILITTWTSSGTTTLFEGVDLSGSNPGQAVELRGVLADSDWLSISEVEILVDDG----EEPITADAVEAGTVGTVTVTATLYDANLSVAGGCNPDGCVASLTRDGGFGEQSRWSCSPQLGSGEKCVISYDLGAVRNLSELRLAMYEGATRTRSVDIFVDGVFATTWQSSGTTDALESIDISGVSGEIVEISGLLAPSEWLSIHE 612 + ID + T WTSSGTTT FE +++ G+ +++ GVL DS+WLSI EVEILVDDG ++ VEAG++G VT T+ L+D L + GC+P GC A LTRDG + SRWSC+P LG C ISYDLGAV +LSELRLA+Y+G TR R+VD+ VDG ATTW SSGTTD E++D+SG SG+ V ++G+L SEW+SI E Sbjct: 118 INIDNLPYTVWTSSGTTTDFETIEVD--TMGRWIDIVGVLEDSEWLSIMEVEILVDDGVTDTDDVAGTTEVEAGSLGIVTATSALFDPRLGDSNGCDPAGCTAELTRDGDVSDGSRWSCAPSLGG--TCSISYDLGAVYDLSELRLALYKGTTRVRTVDVTVDGSLATTWTSSGTTDGFENVDLSGYSGQDVTVTGVLDDSEWVSITE 321
BLAST of mRNA_H-paniculata_contig11241.795.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE) HSP 1 Score: 204 bits (519), Expect = 1.940e-57 Identity = 110/211 (52.13%), Postives = 140/211 (66.35%), Query Frame = 1 Query: 1 VYIDGILITTWTSSGTTTLFEGVDLSGSNPGQAVELRGVLADSDWLSISEVEILVDDGEE-------PITADAVEAGTVGTVTVTATLYDANLSVAGGCNPDGCVASLTRDGGFGEQSRWSCSPQLGSGEKCVISYDLGAVRNLSELRLAMYEGATRTRSVDIFVDGVFATTWQSSGTTDALESIDISGVSGEIVEISGLLAPSEWLSIHE 612 + ID + TTWTSSGTTT FE ++L G+ + + GVLADS+WLSI EV+I++DDGE A VEA T+G+VT A+ YD L+V GGC+P GCV TRDG SRWSC+P LG +C ISYDLG +L ELRLAM++G R S+ + VD TTW SSGTTD E+ID+SG G+++EI+G+L SEWLSI E Sbjct: 99 ISIDNLPYTTWTSSGTTTGFETIELD--TMGRWISIVGVLADSEWLSIMEVKIMIDDGETGSDDDNTTTNASGVEASTLGSVTAGASFYDPRLAVDGGCDPSGCVVDNTRDGDLSTASRWSCAPTLGG--ECTISYDLGTAYDLDELRLAMFKGTERQVSMKVRVDDALVTTWTSSGTTDGFEAIDLSGTWGQVLEITGVLDDSEWLSIIE 305
BLAST of mRNA_H-paniculata_contig11241.795.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI) HSP 1 Score: 141 bits (356), Expect = 2.540e-35 Identity = 77/142 (54.23%), Postives = 93/142 (65.49%), Query Frame = 1 Query: 196 AVEAGTVGT-VTVTATLYDANLSVAGGCNPDGCVASLTRDGGFGEQSRWSCSPQLGS-GEKCVISYDLGAVRNLSELRLAMYEGATRTRSVDIFVDGVFATTWQSSGTTDALESIDI-SGVSGEIVEISGLLAPSEWLSIHE 612 A E GT T VT TA L+D L++ GC+P GC A+LTRDG G+ SRWSC+ LG G C ISYDLG L ELR+A+Y G R R++D+ VDGV TW SSGTTD ESI GVSG ++ + G+L SEWLSI E Sbjct: 241 AKEIGTQDTTVTTTADLFDPALAIDNGCDPAGCTAALTRDGDTGDASRWSCATNLGGEGAVCSISYDLGREFGLDELRVALYNGDIRVRTIDVSVDGVLVATWTSSGTTDGFESIAFPDGVSGTVINLQGVLDDSEWLSIIE 382
BLAST of mRNA_H-paniculata_contig11241.795.1 vs. uniprot
Match: D7G277_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G277_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 1.450e-19 Identity = 63/156 (40.38%), Postives = 86/156 (55.13%), Query Frame = 1 Query: 181 PITADAVEAGTVGTVTVTATLYDANLSVAGGCNPDGCVASLTRDGGFGEQSRWSCSPQL------GSGEKCVISYDLGAVRNLSELRLAMYEGATRTRSVDIFVDGVFATTWQSSGTTDALESIDISGVSGEI------VEISGLLAPSEWLSIHE 612 P AVEAG V TVTVT +DA GC PDGC TRDG + SRWSCS L +GE+C + ++LG + ++ + +A +G TRTR+++I V+G S GTT LE+ ++ G +G +E SGL A E+LSI E Sbjct: 242 PTXXXAVEAGEVTTVTVTTNAFDARTD-DDGCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQVMFELGEAQLVTSVSVAFLKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTA-DEFLSIIE 395
BLAST of mRNA_H-paniculata_contig11241.795.1 vs. uniprot
Match: D7G122_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G122_ECTSI) HSP 1 Score: 82.4 bits (202), Expect = 1.660e-16 Identity = 51/139 (36.69%), Postives = 76/139 (54.68%), Query Frame = 1 Query: 199 VEAGTVGTVTVTATLYDANLSVAGGCNPDGCVASLTRDGGFGEQSRWSCSPQLGSGEKCVISYDLGAVRNLSELRLAMYEGATRTRSVDIFVDGVFATTWQSSGTTDALESIDISGVSGEIVEISGL-LAPSEWLSIHE 612 V+A TV A YD S GGC+PDGC ASLTRD + ++SRWSCS +L + C I+Y +++ +++ Y+G R R++ + F T SSGT+ E+ DI+ + + + L L EW+SI E Sbjct: 5 VDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDAQ-CKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFEKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITE 142
BLAST of mRNA_H-paniculata_contig11241.795.1 vs. uniprot
Match: D8LRJ1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ1_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 6.880e-16 Identity = 51/97 (52.58%), Postives = 61/97 (62.89%), Query Frame = 1 Query: 19 LITTWTSSGTTTLFEGVDLSGSNPGQAVELRGVLADSDWLSISEVEILVDDGEEPITADAVEAGTVGTVTVTATLYDANLSVAGGCNPDGCVASLTR 309 +I WTSSG T FE ++L G + L GVLADSDWLSI EV ILVDDG + A VEAG +G V +A YD L+ GC+P GC A+LTR Sbjct: 1 MIMEWTSSGETAAFETIELGVQ--GTVIGLHGVLADSDWLSILEVGILVDDGNDDGVA-VVEAGELGPVASSAEFYDLRLADTVGCDPAGCSAALTR 94 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11241.795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11241.795.1 >prot_H-paniculata_contig11241.795.1 ID=prot_H-paniculata_contig11241.795.1|Name=mRNA_H-paniculata_contig11241.795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=204bp VYIDGILITTWTSSGTTTLFEGVDLSGSNPGQAVELRGVLADSDWLSISEback to top mRNA from alignment at H-paniculata_contig11241:2185..5730- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11241.795.1 ID=mRNA_H-paniculata_contig11241.795.1|Name=mRNA_H-paniculata_contig11241.795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3546bp|location=Sequence derived from alignment at H-paniculata_contig11241:2185..5730- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11241:2185..5730- >mRNA_H-paniculata_contig11241.795.1 ID=mRNA_H-paniculata_contig11241.795.1|Name=mRNA_H-paniculata_contig11241.795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1224bp|location=Sequence derived from alignment at H-paniculata_contig11241:2185..5730- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |