mRNA_H-paniculata_contig11236.792.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11236.792.1
Unique NamemRNA_H-paniculata_contig11236.792.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11236.792.1 vs. uniprot
Match: D8LE82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE82_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.060e-16
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 LEAVRLERRAGNDKGAGALMAKALQECPGSGVLWAEEILVAQRAEQK 141
            LEAVRLERR+GN KG  +LM KALQECPGSGVLWAEE L AQR+EQK
Sbjct:    3 LEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQK 49
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BLAST of mRNA_H-paniculata_contig11236.792.1 vs. uniprot
Match: A0A7S2EY21_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EY21_TRICV)

HSP 1 Score: 62.8 bits (151), Expect = 2.920e-10
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 LEAVRLERRAGNDKGAGALMAKALQECPGSGVLWAEEILVAQRAEQK 141
            +EAVRLERRAGNDK A ALMA+ALQECP SG+L AE I  A R EQK
Sbjct:  403 VEAVRLERRAGNDKLASALMARALQECPSSGLLLAENIATAPRPEQK 449
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BLAST of mRNA_H-paniculata_contig11236.792.1 vs. uniprot
Match: K0R5N5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R5N5_THAOC)

HSP 1 Score: 62.4 bits (150), Expect = 3.990e-10
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 LEAVRLERRAGNDKGAGALMAKALQECPGSGVLWAEEILVAQRAEQK 141
            LEA+RLERRAGNDK A +LMA+ALQECPGSG L AE I+ + R EQK
Sbjct:  814 LEAIRLERRAGNDKLAVSLMARALQECPGSGRLLAENIITSPRVEQK 860
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BLAST of mRNA_H-paniculata_contig11236.792.1 vs. uniprot
Match: A0A7S4QCV6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QCV6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.460e-10
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 LEAVRLERRAGNDKGAGALMAKALQECPGSGVLWAEEILVAQRAEQK 141
            +EAVRLERRAGNDK A ALMA+ALQ+CP SG+L AE I+ + R EQK
Sbjct:  860 VEAVRLERRAGNDKLASALMARALQDCPSSGLLLAENIITSPRVEQK 906
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BLAST of mRNA_H-paniculata_contig11236.792.1 vs. uniprot
Match: A0A6U1QKH3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A6U1QKH3_CYCTE)

HSP 1 Score: 60.5 bits (145), Expect = 1.320e-9
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 LEAVRLERRAGNDKGAGALMAKALQECPGSGVLWAEEILVAQRAEQK 141
            LEA+RLERRAGNDK A  LMA+ALQECP SG L AE I+ A R EQK
Sbjct:   99 LEAIRLERRAGNDKLAVTLMARALQECPTSGKLLAENIMTAPRVEQK 145
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BLAST of mRNA_H-paniculata_contig11236.792.1 vs. uniprot
Match: A0A7S2UEJ1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEJ1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.450e-9
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 LEAVRLERRAGNDKGAGALMAKALQECPGSGVLWAEEILVAQRAEQK 141
            +EA+RLERRA NDK AG LMA+ALQECP SG+L AE I  A R EQK
Sbjct:  175 VEAIRLERRAANDKLAGTLMARALQECPTSGLLLAENIRTAPRVEQK 221
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BLAST of mRNA_H-paniculata_contig11236.792.1 vs. uniprot
Match: B8C695_THAPS (RNA splicing factor n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C695_THAPS)

HSP 1 Score: 58.9 bits (141), Expect = 6.670e-9
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 LEAVRLERRAGNDKGAGALMAKALQECPGSGVLWAEEILVAQRAEQK 141
            +EA+RLERRAGNDK A +LMA+ALQECP SG+L AE I  + R EQK
Sbjct:  771 VEAIRLERRAGNDKLAVSLMARALQECPSSGLLLAENISTSPRVEQK 817
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BLAST of mRNA_H-paniculata_contig11236.792.1 vs. uniprot
Match: A0A7S2USD3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USD3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.070e-7
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    4 EAVRLERRAGNDKGAGALMAKALQECPGSGVLWAEEILVAQRAEQK 141
            EA+RLERR GN K A  L AKALQ+CP SG++WAEEI  A R +Q+
Sbjct:  166 EAIRLERRHGNSKLAENLTAKALQDCPSSGIIWAEEISCAPRHQQR 211
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BLAST of mRNA_H-paniculata_contig11236.792.1 vs. uniprot
Match: A0A5D6YDN0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDN0_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.120e-7
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 LEAVRLERRAGNDKGAGALMAKALQECPGSGVLWAEEILVAQRAEQK 141
            LEA RLE R GN KG   LMAKALQECP SG+L AE I +A RA+QK
Sbjct:  812 LEAARLEARWGNPKGQEVLMAKALQECPESGLLLAESIDIAPRAQQK 858
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BLAST of mRNA_H-paniculata_contig11236.792.1 vs. uniprot
Match: A0A7S1G2N2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G2N2_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.250e-7
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    7 AVRLERRAGNDKGAGALMAKALQECPGSGVLWAEEILVAQRAEQK 141
            AVRLE RAGN   + +L+AKALQECP SG+LWAE I VA R +QK
Sbjct:  217 AVRLEARAGNHTLSASLLAKALQECPTSGLLWAENIRVAPRPQQK 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11236.792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE82_ECTSI1.060e-1680.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2EY21_TRICV2.920e-1074.47Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
K0R5N5_THAOC3.990e-1072.34Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4QCV6_9STRA5.460e-1070.21Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6U1QKH3_CYCTE1.320e-972.34Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2UEJ1_9STRA2.450e-970.21Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B8C695_THAPS6.670e-968.09RNA splicing factor n=1 Tax=Thalassiosira pseudona... [more]
A0A7S2USD3_9STRA1.070e-763.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A5D6YDN0_9STRA1.120e-768.09Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S1G2N2_9STRA1.250e-766.67Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11236contigH-paniculata_contig11236:7125..7265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog159749.K0R5N5
KEGG koko:K12855
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003824,GO:0004553,GO:0004565,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015030,GO:0015925,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016798,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0030532,GO:0031047,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035257,GO:0035258,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046540,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050681,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051427,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065003,GO:0065007,GO:0070013,GO:0070920,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0080188,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903798,GO:1903800,GO:1990904,GO:2000112,GO:2000628,GO:2000630,GO:2000634,GO:2000636,GO:2000637,GO:2001141
EggNOG free text desc.HAT (Half-A-TPR) repeats
EggNOG OGs2XAUY@2836,KOG0495@1,KOG0495@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_001260.1
COG Functional cat.A
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928827.5610163-CDS-H-paniculata_contig11236:7124..72651622928827.5610163-CDS-H-paniculata_contig11236:7124..7265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11236 7125..7265 +
1691480636.3293967-CDS-H-paniculata_contig11236:7124..72651691480636.3293967-CDS-H-paniculata_contig11236:7124..7265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11236 7125..7265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11236.792.1prot_H-paniculata_contig11236.792.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11236 7125..7265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11236.792.1

>prot_H-paniculata_contig11236.792.1 ID=prot_H-paniculata_contig11236.792.1|Name=mRNA_H-paniculata_contig11236.792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
LEAVRLERRAGNDKGAGALMAKALQECPGSGVLWAEEILVAQRAEQK
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mRNA from alignment at H-paniculata_contig11236:7125..7265+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11236.792.1 ID=mRNA_H-paniculata_contig11236.792.1|Name=mRNA_H-paniculata_contig11236.792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig11236:7125..7265+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGAGGCCGTGAGGCTCGAGCGACGGGCGGGGAATGATAAGGGAGCGGG
CGCGCTCATGGCCAAGGCGCTGCAGGAATGTCCCGGGTCCGGGGTGCTTT
GGGCGGAGGAGATATTGGTGGCGCAAAGGGCCGAACAGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11236:7125..7265+

>mRNA_H-paniculata_contig11236.792.1 ID=mRNA_H-paniculata_contig11236.792.1|Name=mRNA_H-paniculata_contig11236.792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig11236:7125..7265+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGAGGCCGTGAGGCTCGAGCGACGGGCGGGGAATGATAAGGGAGCGGG
CGCGCTCATGGCCAAGGCGCTGCAGGAATGTCCCGGGTCCGGGGTGCTTT
GGGCGGAGGAGATATTGGTGGCGCAAAGGGCCGAACAGAAGCTCGAGGCC
GTGAGGCTCGAGCGACGGGCGGGGAATGATAAGGGAGCGGGCGCGCTCAT
GGCCAAGGCGCTGCAGGAATGTCCCGGGTCCGGGGTGCTTTGGGCGGAGG
AGATATTGGTGGCGCAAAGGGCCGAACAGAAG
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