mRNA_H-paniculata_contig11227.783.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11227.783.1
Unique NamemRNA_H-paniculata_contig11227.783.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11227.783.1 vs. uniprot
Match: D8LIN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN4_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 2.950e-124
Identity = 183/246 (74.39%), Postives = 217/246 (88.21%), Query Frame = 1
Query:    1 LLGCSTQMVNFWKPTLHLAQVDYTAVFQRNHIPSTFAGHITFHESTGNYHPIVYVNEFWLQKKHLLELNSTVETLPLELSISSMSMWKFQQTMSQLETQWAAQSKMGLSADGDEDTFRELLANTNPFVLAITMVVSLLHTLFNFLAFKNDIAFWKDKKRSLEGISVRGMLVNLFFQVVIFLYLVDNNTTYMVLVTNAIGLAIEASHWNVWKVGRFIVGKLNWGGQDGQPTRVIPTLTFRAKEVYRK 738
            L G   +M+N+WKPTL L Q+D+TA+FQRNHIPS+FAGHITF  STGNYHP++YVNEFWLQ+KHLL LNSTVE++ LELSIS +S+WKFQ TMSQLE+QWAAQ+K+G++ DG++DTFRELLA TNP VL ITM+VSLLH++FNFLAFKNDI+FWKDKKRSLEGISVRGMLVNLFFQ VIFL L DN+TTYM+LVTNAIGLAIE     VWKVGRF+VG+L+WGG+DGQP R +P + F+AKE YRK
Sbjct:  289 LAGADREMINYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLLALNSTVESVDLELSISPISLWKFQ-TMSQLESQWAAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLSLADNDTTYMILVTNAIGLAIE-----VWKVGRFMVGRLDWGGEDGQPRRWVPRMMFQAKESYRK 528          
BLAST of mRNA_H-paniculata_contig11227.783.1 vs. uniprot
Match: A0A836CN46_9STRA (Cleft lip and palate transmembrane protein 1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN46_9STRA)

HSP 1 Score: 231 bits (590), Expect = 3.750e-68
Identity = 117/237 (49.37%), Postives = 166/237 (70.04%), Query Frame = 1
Query:   28 NFWKPTLHLAQVDYTAVFQRNHIPSTFAGHITFHESTGNYHPIVYVNEFWLQKKHLLELNSTVETLPLELSISSMSMWKFQQTMSQLETQWAAQSKMGLSADGDEDTFRELLANTNPFVLAITMVVSLLHTLFNFLAFKNDIAFWKDKKRSLEGISVRGMLVNLFFQVVIFLYLVDNNTTYMVLVTNAIGLAIEASHWNVWKVGRFIVGKLNWGGQDGQPTRVIPTLTFRAKEVYRK 738
            NFWKPTL +  VD TA FQRNHIP+ FA  I FH +TGNY+PIV VNEFWLQ KH   LN+T     L +S   + + K+Q  MSQL  QW  +++MGL ++ + D+  ++L +T+P++L +T ++S LH++F+FLAFK+D++FW+ K+RSLEG+SVR M+VN FFQ+VI LYL DN T+Y++LV++A+GLAIE     +WK+G+    K  W      P R++P++T  A   Y K
Sbjct:  278 NFWKPTLAIQLVDMTADFQRNHIPAVFAEDIKFHAATGNYYPIVVVNEFWLQTKHYTALNATAPAAALAMSYRPVGLGKWQ-IMSQLARQWRTRARMGLQSESETDSIVDMLGDTSPWLLVLTFLISALHSIFDFLAFKSDVSFWR-KRRSLEGLSVRSMVVNCFFQIVITLYLFDNETSYLILVSSAVGLAIE-----LWKLGKAFSAKCEWA-----PGRLLPSITMTASASYAK 502          
BLAST of mRNA_H-paniculata_contig11227.783.1 vs. uniprot
Match: A0A0D2X1P3_CAPO3 (Transmembrane CLPTM1 family protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X1P3_CAPO3)

HSP 1 Score: 187 bits (476), Expect = 7.970e-52
Identity = 95/236 (40.25%), Postives = 152/236 (64.41%), Query Frame = 1
Query:   25 VNFWKPTLHLAQVDYTAVFQRNHIPSTFAGHITFHESTGNYHPIVYVNEFWLQKKHLLELNSTVETLPLELSISSMSMWKFQQTMSQLETQWAAQSKMGLSADGDEDTFRELLANTNPFVLAITMVVSLLHTLFNFLAFKNDIAFWKDKKRSLEGISVRGMLVNLFFQVVIFLYLVDNNTTYMVLVTNAIGLAIEASHWNVWKVGRFIVGKLNWGGQDGQPTRVIPTLTFRAKEVY 732
            +++W   L +  V+  + F RN +P     ++TF E+TGNY PI+  N+FW+ +  L  +N T   LPLE+S S  S+WK+   + Q+E  +  Q   G   + D D F+ ++ +TNP++L +TMVVSLLH++F+FLAFKND+ FWK K+ S+ G+SVR + +N+ FQ +IFLYL+DN+T++++L+++ +GLAIE     VWKV + +    N    + +   +IP LT+  K+ Y
Sbjct:  219 ISYWSNQLVIDLVEDQSAFNRNSVPPQIKDYLTFEETTGNYFPILDFNDFWMMRDDLYPINETTTELPLEISFSLQSLWKWT-LLIQMEQSFEMQHSWGQMGENDADNFKRMITDTNPYLLGLTMVVSLLHSVFDFLAFKNDVVFWK-KRDSMAGLSVRTIFMNIGFQFIIFLYLLDNDTSWLILISSGVGLAIE-----VWKVSKAV----NLVPSEDKIFSIIPRLTYTHKKSY 443          
BLAST of mRNA_H-paniculata_contig11227.783.1 vs. uniprot
Match: L8H030_ACACA (Transmembrane protein, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H030_ACACA)

HSP 1 Score: 186 bits (472), Expect = 1.040e-51
Identity = 95/240 (39.58%), Postives = 155/240 (64.58%), Query Frame = 1
Query:   13 STQMVNFWKPTLHLAQVDYTAVFQRNHIPSTFAGHITFHESTGNYHPIVYVNEFWLQKKHLLELNSTVETLPLELSISSMSMWKFQQTMSQLETQWAAQSKMGLSADGDEDTFRELLANTNPFVLAITMVVSLLHTLFNFLAFKNDIAFWKDKKRSLEGISVRGMLVNLFFQVVIFLYLVDNNTTYMVLVTNAIGLAIEASHWNVWKVGRFIVGKLNWGGQDGQPTRVIPTLTFRAKEVY 732
            S ++V+FWKP L L  V    V+ R  IP      ++F ++ G+YHP +++NEFW+ ++HL  +N T   LPL L  +++SMWK+Q  M Q++  +  Q   G +A+G+ D  + +L  TNP++L +T  VS+LH++F+FLAFKNDI+FWK+KK +LEG+SVR + VN   Q +I LYL DN+T++++L++ ++GL IEA     WK+ + +   + W      P   +P+++F+ +  Y
Sbjct:  196 SVELVSFWKPNLTLNMVHDFTVYPRGGIPPQMEELMSF-DAEGSYHPTLFINEFWIFREHLYPINDTTPELPLRLEYNTLSMWKWQM-MVQMQHSFKMQESWGSAAEGESDEIKRMLVETNPWLLVLTFAVSILHSVFDFLAFKNDISFWKEKK-NLEGLSVRTIFVNCITQFIILLYLFDNDTSWIILISASVGLLIEA-----WKITKAVEVIVQW------PNGGLPSISFKDRATY 421          
BLAST of mRNA_H-paniculata_contig11227.783.1 vs. uniprot
Match: A0A6P5GSI8_ANACO (cleft lip and palate transmembrane protein 1 homolog n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GSI8_ANACO)

HSP 1 Score: 184 bits (466), Expect = 9.320e-51
Identity = 97/240 (40.42%), Postives = 150/240 (62.50%), Query Frame = 1
Query:   19 QMVNFWKPTLHLAQVDYTAVFQRNHIPSTFAGHITFHESTGNYHPIVYVNEFWLQKKHLLELNSTVETLPLELSISSMSMWKFQQTMSQLETQWAAQSKMGLSADGDEDTFRELLANTNPFVLAITMVVSLLHTLFNFLAFKNDIAFWKDKKRSLEGISVRGMLVNLFFQVVIFLYLVDNNTTYMVLVTNAIGLAIEASHWNVWKVGRFIVGKLNWGGQDGQPTRVIPTLTFRAKEVYRK 738
            + V++WKP + +  VD    +  N+IP T AGH+     TGNY+P VY NEFWL +  L+ LN TV+ LPL L +S +SM K+Q  + Q+E  +      G   +G+ D  + +    NP++L +TMVVSLLH++F+FLAFKNDI FW +K +S+EG+S + ++V+   Q+V+FLYL+DN T++M+L ++ +G  IE      WK+G+ +  +++  G+       IP L FR  + Y K
Sbjct:  206 EFVSYWKPNITINLVDDFTRYPHNNIPQTVAGHLNVDPITGNYYPTVYFNEFWLLRDKLIPLNETVKELPLNLELSPISMTKWQLFL-QIEQSFQVHRSYGSMLEGETDELKRVFLEGNPYLLVVTMVVSLLHSVFDFLAFKNDIQFW-NKNKSMEGLSAKSVVVSFICQLVVFLYLLDNETSWMILASSGVGCCIE-----FWKIGKAMHIEIDRSGK-------IPMLRFRDHDSYAK 431          
BLAST of mRNA_H-paniculata_contig11227.783.1 vs. uniprot
Match: S8C5G8_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8C5G8_9LAMI)

HSP 1 Score: 181 bits (458), Expect = 1.070e-49
Identity = 92/242 (38.02%), Postives = 154/242 (63.64%), Query Frame = 1
Query:    7 GCSTQMVNFWKPTLHLAQVDYTAVFQRNHIPSTFAGHITFHESTGNYHPIVYVNEFWLQKKHLLELNSTVETLPLELSISSMSMWKFQQTMSQLETQWAAQSKMGLSADGDEDTFRELLANTNPFVLAITMVVSLLHTLFNFLAFKNDIAFWKDKKRSLEGISVRGMLVNLFFQVVIFLYLVDNNTTYMVLVTNAIGLAIEASHWNVWKVGRFIVGKLNWGGQDGQPTRVIPTLTFRAKEVY 732
            G + + +++WKP + +  VD  + + +N +P T   +++   STGNY+P V+ NEFWL +  L+ +N TV+ LPL+L +  +SM K+Q  + Q++  +      G   +G+ D  + +    NP++L +TMVVSLLH++F+FLAFKNDI FW +K +S+EG+S + ++VN F Q++IFLYL+DN T++M+L +  IG+ IE      WK+G+ +  +++  G+       IP L FR ++ Y
Sbjct:  198 GGAIEWISYWKPNITINLVDDFSRYPQNAVPPTVFPYLSIEPSTGNYYPTVFFNEFWLLRDKLIAINKTVKELPLDLEVGPISMTKWQMFL-QIDQSFQIHRNYGSMLEGEADQLKRVFLEGNPYLLGVTMVVSLLHSVFDFLAFKNDIQFW-NKNKSMEGLSAKSVVVNFFCQLIIFLYLLDNETSWMILASTGIGVCIE-----FWKIGKAMHIEIDRSGK-------IPKLRFRDRDSY 425          
BLAST of mRNA_H-paniculata_contig11227.783.1 vs. uniprot
Match: A0A068V1R3_COFCA (Uncharacterized protein n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068V1R3_COFCA)

HSP 1 Score: 177 bits (448), Expect = 1.280e-49
Identity = 90/241 (37.34%), Postives = 151/241 (62.66%), Query Frame = 1
Query:   16 TQMVNFWKPTLHLAQVDYTAVFQRNHIPSTFAGHITFHESTGNYHPIVYVNEFWLQKKHLLELNSTVETLPLELSISSMSMWKFQQTMSQLETQWAAQSKMGLSADGDEDTFRELLANTNPFVLAITMVVSLLHTLFNFLAFKNDIAFWKDKKRSLEGISVRGMLVNLFFQVVIFLYLVDNNTTYMVLVTNAIGLAIEASHWNVWKVGRFIVGKLNWGGQDGQPTRVIPTLTFRAKEVYRK 738
            T+ +++WKP + +  VD    +Q+N +P   A ++    +TGNY+P V+ NEFWL +  L+ +N TV  LPL L +  +SM K+Q  + Q++  +      G   +G+ D  + +    NP++L +TM+VSLLH++F+FLAFKNDI FW +K +S+EG+S + ++V+   Q+++FLYL+DN+T++M+L ++ IG  IE      WK+G+ +  +++  G+       IP L FR +E Y K
Sbjct:   33 TEWISYWKPNITINLVDDFTRYQQNAVPPNIAPYLNIEPTTGNYYPTVFFNEFWLLRDKLIAINETVTELPLHLEVGPISMTKWQLFL-QIDQSFQIHRNYGSMLEGEADELKRVFLEGNPYLLVVTMIVSLLHSVFDFLAFKNDIQFW-NKNKSMEGLSAKSVVVSFVCQLIVFLYLLDNDTSWMILASSGIGCCIE-----FWKIGKAMHIEIDRSGK-------IPMLRFRDRESYAK 259          
BLAST of mRNA_H-paniculata_contig11227.783.1 vs. uniprot
Match: M1C5J2_SOLTU (Cleft lip and palate transmembrane protein n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1C5J2_SOLTU)

HSP 1 Score: 177 bits (448), Expect = 1.300e-49
Identity = 90/238 (37.82%), Postives = 148/238 (62.18%), Query Frame = 1
Query:   19 QMVNFWKPTLHLAQVDYTAVFQRNHIPSTFAGHITFHESTGNYHPIVYVNEFWLQKKHLLELNSTVETLPLELSISSMSMWKFQQTMSQLETQWAAQSKMGLSADGDEDTFRELLANTNPFVLAITMVVSLLHTLFNFLAFKNDIAFWKDKKRSLEGISVRGMLVNLFFQVVIFLYLVDNNTTYMVLVTNAIGLAIEASHWNVWKVGRFIVGKLNWGGQDGQPTRVIPTLTFRAKEVY 732
            + +++WKP + +  VD    +  N IP   A +I    +TGNY+P V+ NEFWL +  L+ +N TV  +PL L +S +SM K+Q  + Q++  +      G   DG+ D  + +    NP++L +TM+VS++H+LF+FLAFKNDI FW +K +S+EG+S + ++VN F Q ++FLYL+DN+T++M+L ++ +G  IE      WK+G+ +  +++  G+       IP L FR +E Y
Sbjct:   34 EWISYWKPNVTINLVDDFTRYTANAIPPIVAPYINIESTTGNYYPTVFFNEFWLLRDKLIAINDTVTEVPLHLEVSPISMTKWQLFL-QMDQSFQVHRSYGSMLDGESDELKRVFLEGNPYLLGVTMIVSVMHSLFDFLAFKNDIQFW-NKNKSMEGLSAKSVIVNFFCQFIVFLYLLDNDTSWMILASSGVGCCIE-----FWKIGKAMHIEIDRSGR-------IPMLRFRDRESY 257          
BLAST of mRNA_H-paniculata_contig11227.783.1 vs. uniprot
Match: D8RG86_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RG86_SELML)

HSP 1 Score: 180 bits (456), Expect = 2.730e-49
Identity = 94/241 (39.00%), Postives = 151/241 (62.66%), Query Frame = 1
Query:   16 TQMVNFWKPTLHLAQVDYTAVFQRNHIPSTFAGHITFHESTGNYHPIVYVNEFWLQKKHLLELNSTVETLPLELSISSMSMWKFQQTMSQLETQWAAQSKMGLSADGDEDTFRELLANTNPFVLAITMVVSLLHTLFNFLAFKNDIAFWKDKKRSLEGISVRGMLVNLFFQVVIFLYLVDNNTTYMVLVTNAIGLAIEASHWNVWKVGRFIVGKLNWGGQDGQPTRVIPTLTFRAKEVYRK 738
            T+ V+FWKP + +  VD    + RN +P T A ++ F E++GNY+P V+ NEFWL +  L+ +N T   L L L +S +S+ ++Q  + Q++  +      G   +G+ D  + +    NP +LAITM VSLLHT+F+FLAFKNDI FW +K +S+EG+S R ++VN F Q+V+FLYL+DN T++M+++++ +G  IE      WK+G+ +  +++  G+        P L FR ++ Y K
Sbjct:  166 TEWVSFWKPNVTMNLVDDFTKYSRNALPPTVAEYLNFEETSGNYYPTVFFNEFWLLRDKLIRINETTTELTLNLDLSPISLTRWQLYL-QIDQSFQIHRSYGSMLEGEADELKRVFLEGNPILLAITMTVSLLHTVFDFLAFKNDIQFW-NKNKSMEGLSARSVVVNFFCQLVVFLYLLDNETSWMIILSSGVGCCIE-----FWKIGKAMHIEVDRSGR-------FPLLRFRDRDSYAK 392          
BLAST of mRNA_H-paniculata_contig11227.783.1 vs. uniprot
Match: A0A7S4RNP8_9STRA (Hypothetical protein n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RNP8_9STRA)

HSP 1 Score: 181 bits (458), Expect = 4.090e-49
Identity = 102/222 (45.95%), Postives = 146/222 (65.77%), Query Frame = 1
Query:   19 QMVNFWKPTLHLAQVDYTAVF-QRNHIPSTFAGHITFHESTGNYHPIVYVNEFWLQKKHLLELNSTVETLPLELSISSMSMWKFQQTMSQLETQWAAQSKMGLSADGDEDTFRELLANTNPFVLAITMVVSLLHTLFNFLAFKNDIAFWKDKKRSLEGISVRGMLVNLFFQVVIFLYLVDNNTTYMVLVTNAIGLAIEASHWNVWKVGR-----FIVGKLNW 666
            Q++ + KP+L L  V     F QR  IP  F+ H+ ++ S   Y+PI+Y +EFW+   HL+E+N T++    E+ I  + MWK+Q  MSQ+E  WA Q KM    D   D FR +L  TNP++LA+T +VS+LHT+F+ LAFKNDI+F++ KK S+EG+S+R M+VN FFQVVI LYL DN T +MVL++N +GL IE     +WK+ +     F  GK++W
Sbjct:  290 QLLLYAKPSLTLQIVPVELQFPQRQSIPPQFSMHMDWY-SDYEYYPILYNSEFWIMTDHLVEVNGTIDESVTEMRIEHVPMWKWQ-LMSQMEQTWANQEKMTGEEDSSNDMFRTMLMETNPYLLAVTAIVSVLHTVFDILAFKNDISFFRGKK-SMEGLSLRSMVVNTFFQVVILLYLADNETNFMVLMSNGVGLLIE-----IWKISKAVKISFEGGKIHW 503          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11227.783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIN4_ECTSI2.950e-12474.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CN46_9STRA3.750e-6849.37Cleft lip and palate transmembrane protein 1-domai... [more]
A0A0D2X1P3_CAPO37.970e-5240.25Transmembrane CLPTM1 family protein n=2 Tax=Capsas... [more]
L8H030_ACACA1.040e-5139.58Transmembrane protein, putative n=1 Tax=Acanthamoe... [more]
A0A6P5GSI8_ANACO9.320e-5140.42cleft lip and palate transmembrane protein 1 homol... [more]
S8C5G8_9LAMI1.070e-4938.02Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
A0A068V1R3_COFCA1.280e-4937.34Uncharacterized protein n=1 Tax=Coffea canephora T... [more]
M1C5J2_SOLTU1.300e-4937.82Cleft lip and palate transmembrane protein n=1 Tax... [more]
D8RG86_SELML2.730e-4939.00Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
A0A7S4RNP8_9STRA4.090e-4945.95Hypothetical protein n=5 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11227contigH-paniculata_contig11227:4005..8113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score370.9
Seed ortholog evalue4.4e-100
Seed eggNOG ortholog2880.D8LIN4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.apoptotic process
EggNOG OGsKOG2489@1,KOG2489@2759
Ec32 ortholog descriptionMembrane-associated protein
Ec32 orthologEc-11_004530.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size738
Cds size717
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.745203-UTR-H-paniculata_contig11227:4004..40251622928826.745203-UTR-H-paniculata_contig11227:4004..4025Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11227 4005..4025 +
1691480635.923859-UTR-H-paniculata_contig11227:4004..40251691480635.923859-UTR-H-paniculata_contig11227:4004..4025Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11227 4005..4025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.757725-CDS-H-paniculata_contig11227:4025..41351622928826.757725-CDS-H-paniculata_contig11227:4025..4135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11227 4026..4135 +
1691480635.937199-CDS-H-paniculata_contig11227:4025..41351691480635.937199-CDS-H-paniculata_contig11227:4025..4135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11227 4026..4135 +
1622928826.7679026-CDS-H-paniculata_contig11227:5197..53361622928826.7679026-CDS-H-paniculata_contig11227:5197..5336Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11227 5198..5336 +
1691480635.9550118-CDS-H-paniculata_contig11227:5197..53361691480635.9550118-CDS-H-paniculata_contig11227:5197..5336Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11227 5198..5336 +
1622928826.778163-CDS-H-paniculata_contig11227:5692..57791622928826.778163-CDS-H-paniculata_contig11227:5692..5779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11227 5693..5779 +
1691480635.967746-CDS-H-paniculata_contig11227:5692..57791691480635.967746-CDS-H-paniculata_contig11227:5692..5779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11227 5693..5779 +
1622928826.7903244-CDS-H-paniculata_contig11227:6476..65951622928826.7903244-CDS-H-paniculata_contig11227:6476..6595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11227 6477..6595 +
1691480635.9769304-CDS-H-paniculata_contig11227:6476..65951691480635.9769304-CDS-H-paniculata_contig11227:6476..6595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11227 6477..6595 +
1622928826.8037074-CDS-H-paniculata_contig11227:7349..74971622928826.8037074-CDS-H-paniculata_contig11227:7349..7497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11227 7350..7497 +
1691480635.9858806-CDS-H-paniculata_contig11227:7349..74971691480635.9858806-CDS-H-paniculata_contig11227:7349..7497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11227 7350..7497 +
1622928826.8127513-CDS-H-paniculata_contig11227:7999..81131622928826.8127513-CDS-H-paniculata_contig11227:7999..8113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11227 8000..8113 +
1691480635.9942663-CDS-H-paniculata_contig11227:7999..81131691480635.9942663-CDS-H-paniculata_contig11227:7999..8113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11227 8000..8113 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11227.783.1prot_H-paniculata_contig11227.783.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11227 4026..8113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11227.783.1

>prot_H-paniculata_contig11227.783.1 ID=prot_H-paniculata_contig11227.783.1|Name=mRNA_H-paniculata_contig11227.783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=239bp
MVNFWKPTLHLAQVDYTAVFQRNHIPSTFAGHITFHESTGNYHPIVYVNE
FWLQKKHLLELNSTVETLPLELSISSMSMWKFQQTMSQLETQWAAQSKMG
LSADGDEDTFRELLANTNPFVLAITMVVSLLHTLFNFLAFKNDIAFWKDK
KRSLEGISVRGMLVNLFFQVVIFLYLVDNNTTYMVLVTNAIGLAIEASHW
NVWKVGRFIVGKLNWGGQDGQPTRVIPTLTFRAKEVYRK
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mRNA from alignment at H-paniculata_contig11227:4005..8113+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11227.783.1 ID=mRNA_H-paniculata_contig11227.783.1|Name=mRNA_H-paniculata_contig11227.783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4109bp|location=Sequence derived from alignment at H-paniculata_contig11227:4005..8113+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTTGGGTTGTTCTACCCAGATGGTGAATTTCTGGAAGCCGACGCTGCA CCTGGCGCAGGTAGACTACACGGCCGTGTTTCAACGGAATCACATCCCCT CCACGTTCGCCGGCCACATCACCTTCCATGAGTAAGCTGTTTTTTTTTGG TTTTTTTTCCAGCTTGCATTATTACCGTTTGCAGCCCGTACATACCCCGT ACATATATACCCCTTCTAATGCTGTATACGTGGCGCTGATGAGGTTCTTC CTGTCTACATGCAGCTTTGGATCGTGAGCTTACTGTGTAACGGTAGGTAT AGGAGCTGAAGGGTATGTATATACCCACATGTATAGTACAAACTAACATC CAACCCACCCTTCTCTATAAGGCTATTCGCCGATAAATGTCACGTTAGGT CCATTACTTTTATGTGTGTGTGTGTGCTTGTTGGGTTTTTTTCCCCATCA GTAACAGTACAATTGAGTGATATTATTGTTTTTGGATGAATAATAACGCG CACGATATTTGGGGGGGGGGGAGAGGAGACGATTTTAGCAAGAGCGTACG CCTAGTAGATGGTGTTGTATTTTTGAGAGGCTTTAGACACGAGAGCATTT TTTTTTTTTTTTTAACCCCCAGAAGGTTAAGTCAAAAACCGTTATCCGAT GCTTCCATACTTGAGTATTTCTATCGAAGTATTTCTAGATTTCCTTTAAC AGAACAGAGTTATTTTTTCCCCGTGCGGGGAAAAAGGCGTGAAAGTTGAC GGTTGGCTCCTATAAGCAGCGTTGGAGGTCCGTAGGTGGGTTGCTTCGCA GGATTGTTTTCAGCCTTGAAAGGTCATGATCCAAATCTGTCGCATGTCGC ATGCGGTTTAGCTGTCCTTGACTGCACATGTTTTTTGGTATCGCGTAATT AGTAGGTCATTATTTGTGCGGGAGATACGTTGCGTGGAATTTGATTTATG TACATTGAAGGTTGGAATTGATAGACGAGAGGAGACGAAAATGGCGTCGC GTGTTGATACGTTAAGAGTGGGTGATGAATAAGTATTTAGTTATTGGCGT GTAGCTTAGCTTTGATTTTATGTGGACTTTTGTAGCACAGGCAAACTATT TTATTATCGAGGTGACCGTTTTCTCCAGGCGTCGTTTACTACCAACCCAA ACGACATTCAATCAAAACAAACCAACTTTTATGAAAAATGCAGGTCGACC GGTAACTACCATCCTATAGTCTACGTAAACGAGTTCTGGCTGCAGAAGAA GCATCTGCTGGAGCTTAACTCTACGGTGGAAACGCTGCCCCTCGAGCTAT CCATCTCCTCGATGAGCATGTGGAAATTCCAGGTGAAGATTACAAGAAAG AAAGCAGAAATAGAACCGCCCACTGGATGCCAACAACTCAATGCCACACA GTGAAATTGTTTTCGAGCTCTCAAGAGATTGAAAAATTGGTAAGTTTTCG CTGTCGAAGAAAGTGTGCTCAATTCAATTACTGCTCGTCCCATCCCAGTT TTCCATCTAACATGAGACACGTGGAATTCCGGCTATTAAGGTAGCATCTC TCTCTTAAGCTCTAGGGTGAGATGTGTTGTATCTGCCAGCTGGTTGTGAC GTGGTATTTGACATGTGTTTTTTCTATCTTTTTTTTTTTTTCTTTTTCTC TCTTTCTCCTTGTTTGTTCGTGTTGTGCTGCATTTGAGCAGACGATGTCA CAGCTGGAGACTCAGTGGGCGGCACAGTCCAAGATGGGCCTTTCCGCCGA TGGGGACGAAGACACCTTCCGAGAGGTATGTATGAGTGCTCATTCTTCGT AATTCCCTACGGAGCTATTTTGCTTTTTTTTTTTTTTTTGTATATATTTA TGTTTCTATAGAGTGTATGGTTTGATGAGTTTTTTTTTTTTTCAATTATT CATCAGGCTCACCAGTGGGTGCAATTTTTATTTTACTCTTGTTATGGTTC GTTTTATGATATTATATGTTCTCTTTTTTGTCAGATACCCCCTGAATTAT TGCTAGTTTTGTATCATATATGTGTGTGTGTGTGTCTGTGTGTAGTGTAT CAGCACATTTGATCTCTCGATACGCTGATATCATCGTGCTATATACATGT TGGCCAAATATCGGCGAAAGTATCGGCTGTTGCCCGCAGCACCAGGTAAG CGTAGCTAGCAGGACATATGGAAGCAATAGATGCACATCGTGTATGGTTG AAACGCGCAGCCTATGGGAAGTGATCGATGAATTGTGTTTAGAGCTAGTA ACGGTAAACGTCCATAGACAGGCGCAAAAACCGATAGATACGATGTATCA ATATCGACGGCGTATCGGATATATGTATATGTATATGTATATGTATATGT GTATATCGGAGCGATGCACAATCCTAATCTTTTGTATTTGTCTTCGTTTT CGTTGTTTGTTGTTTCAACCATTCAAATGTTGGTCGTTATTTTTTGTTTT TTGTTTTTTTCTCGGGTGACAGCTGCTCGCGAACACGAACCCATTTGTTT TGGCTATCACCATGGTGGTGTCGTTGCTGCACACCCTCTTCAATTTCCTG GCCTTCAAAAACGACATCGCTTTCTGGAAAGACAAAAAGAGGTACAAGCA TACCACCCCCACGGACAAATACGAATAATTGGCGTATTCACCATGAAAAG TGAAGAAAAATCACCTGAGTTTTAGAATGAGCGGACACATAGAATAAAGT ACCCACCCCTGTCCATTCGGTTTGCTAGTATTATTAGGTAGTAGTCGTGG ATGGTCCGGAGCACAGAGAATACACGAGCTTGTTTTGAAACTTGGGCGAA TACGCTAAGTATTCCTATTTATCTGGGTGGTGAAATATATATAAGAGTAG CGAGCGATCCCTTGATGAATGAGAAGAACAGCGTTTGGGACCTTAGAGTT TTTATATTTTGATTGAATCTCGTTTGAAGTCTACGATAATGTAAATATAT ATTTACTTGAATAAATAGCGTGAACGTCATCGAGTTGATGTCTAATAAAT CAGGATTGCCAGGTAAAGTAAACGTTCAAGTGTTCGTCTCTCCGGCCGGT GTTGATGAAATATTTGAAACAAGACACGGAATCTCCTCACCTGTTGGCAT TATATATTTGTTTTTTACCTGTTGTTGGGATGATGTGCCATTTTTTTTGG TGTAATCATACCATCCAGTAACACGTGAAAATAGGAATGACACGCTCGTA AAAAACGCTGCTGAAGTTACTGCCTGTGTCGTGCTGTGTTGAAAGCTAAA CTAGCATTCCCGTGTTACTTTCAGCCTAGGAAGGTCATAATAAAATAGTT GGATACTGGGCGCGCGTGTCTGTCTGTCTATCGGCGGTTTTCCAGGTCTT TGGAAGGCATTTCTGTGCGAGGGATGCTGGTGAATTTGTTCTTTCAGGTG GTCATCTTCCTCTATCTCGTGGACAACAACACCACGTACATGGTGCTGGT AACCAATGCGATAGGGCTAGCAATCGAGGCAAGTCACTGGAACGTAGAGT GGAGTAAAGGCTTTGGACGGTCGATGGAGCTTCATGTTTGTGTTGAGTGC GTTCTTTAGAAAACGCATCCCGGGGTGATGGTGGTTTCGTATGCATCGCT TGTGTACGTTGGATGGGAGCCATCCTCTCGTGTAACGTCTATAGACGAAA GTGGCGTGCTTCATTGTTGAACAGGGGAAAGTATGTTGATGTCCCCGGGG GGAGGGAGGGGGAGAACAAACGCTCATATAATCAAGTTGTAAGATTTAAT CTGTCCGACGTGTGGTATGTTTAATTGGCTTCCAAAGCAACTTGACAATT TGGGCGATATTTTTGGGCTTGTGATTGCCTCTGCTCGCCAAAAGCAAAGA GTCCGATCTCCATAGTAGTAATAATAATAATAATAGGGGACATTTCGATA ATATGGTATTTGAGACAGGTGTTTTCTATCTGACAAACCTAAAACAAGAA TATTTCTTGATTTTTTTTTTTTTTGTTACCCCCGCCCGTCAGCAGGTGTG GAAGGTGGGGCGGTTCATCGTGGGGAAGTTGAACTGGGGAGGGCAGGACG GGCAGCCAACCCGGGTCATTCCCACACTCACGTTTCGAGCAAAGGAGGTG TACCGTAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11227:4005..8113+

>mRNA_H-paniculata_contig11227.783.1 ID=mRNA_H-paniculata_contig11227.783.1|Name=mRNA_H-paniculata_contig11227.783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1434bp|location=Sequence derived from alignment at H-paniculata_contig11227:4005..8113+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAATTTCTGGAAGCCGACGCTGCACCTGGCGCAGGTAGACTACAC
GGCCGTGTTTCAACGGAATCACATCCCCTCCACGTTCGCCGGCCACATCA
CCTTCCATGAATGGTGAATTTCTGGAAGCCGACGCTGCACCTGGCGCAGG
TAGACTACACGGCCGTGTTTCAACGGAATCACATCCCCTCCACGTTCGCC
GGCCACATCACCTTCCATGAGTCGACCGGTAACTACCATCCTATAGTCTA
CGTAAACGAGTTCTGGCTGCAGAAGAAGCATCTGCTGGAGCTTAACTCTA
CGGTGGAAACGCTGCCCCTCGAGCTATCCATCTCCTCGATGAGCATGTGG
AAATTCCAGGTCGACCGGTAACTACCATCCTATAGTCTACGTAAACGAGT
TCTGGCTGCAGAAGAAGCATCTGCTGGAGCTTAACTCTACGGTGGAAACG
CTGCCCCTCGAGCTATCCATCTCCTCGATGAGCATGTGGAAATTCCAGCA
GACGATGTCACAGCTGGAGACTCAGTGGGCGGCACAGTCCAAGATGGGCC
TTTCCGCCGATGGGGACGAAGACACCTTCCGAGAGCAGACGATGTCACAG
CTGGAGACTCAGTGGGCGGCACAGTCCAAGATGGGCCTTTCCGCCGATGG
GGACGAAGACACCTTCCGAGAGCTGCTCGCGAACACGAACCCATTTGTTT
TGGCTATCACCATGGTGGTGTCGTTGCTGCACACCCTCTTCAATTTCCTG
GCCTTCAAAAACGACATCGCTTTCTGGAAAGACAAAAAGAGCTGCTCGCG
AACACGAACCCATTTGTTTTGGCTATCACCATGGTGGTGTCGTTGCTGCA
CACCCTCTTCAATTTCCTGGCCTTCAAAAACGACATCGCTTTCTGGAAAG
ACAAAAAGAGGTCTTTGGAAGGCATTTCTGTGCGAGGGATGCTGGTGAAT
TTGTTCTTTCAGGTGGTCATCTTCCTCTATCTCGTGGACAACAACACCAC
GTACATGGTGCTGGTAACCAATGCGATAGGGCTAGCAATCGAGGCAAGTC
ACTGGAACGTCTTTGGAAGGCATTTCTGTGCGAGGGATGCTGGTGAATTT
GTTCTTTCAGGTGGTCATCTTCCTCTATCTCGTGGACAACAACACCACGT
ACATGGTGCTGGTAACCAATGCGATAGGGCTAGCAATCGAGGCAAGTCAC
TGGAACGTGTGGAAGGTGGGGCGGTTCATCGTGGGGAAGTTGAACTGGGG
AGGGCAGGACGGGCAGCCAACCCGGGTCATTCCCACACTCACGTTTCGAG
CAAAGGAGGTGTACCGTAAGGTGTGGAAGGTGGGGCGGTTCATCGTGGGG
AAGTTGAACTGGGGAGGGCAGGACGGGCAGCCAACCCGGGTCATTCCCAC
ACTCACGTTTCGAGCAAAGGAGGTGTACCGTAAG
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