mRNA_H-paniculata_contig11172.752.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11172.752.1
Unique NamemRNA_H-paniculata_contig11172.752.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11172.752.1 vs. uniprot
Match: A0A7S2WWK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWK3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.140e-11
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   25 AKRCYLEAIRIKPDFSIAWSNLAGIFKEEGNLNTAIAY 138
            A+R YLEAIRI+PDF+IAWSNLAG+FK+EG + TA+AY
Sbjct:    4 ARRSYLEAIRIRPDFAIAWSNLAGVFKDEGQVATAVAY 41
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BLAST of mRNA_H-paniculata_contig11172.752.1 vs. uniprot
Match: A0A0A9NUZ7_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9NUZ7_ARUDO)

HSP 1 Score: 60.8 bits (146), Expect = 1.250e-10
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 QAQGMLPEAKRCYLEAIRIKPDFSIAWSNLAGIFKEEGNLNTAIAY 138
            +AQG + EA  CY+EA+ I P F+IAWSNLAG+F E G+L+ A+ Y
Sbjct:    2 KAQGFIQEAYSCYIEALHIDPHFAIAWSNLAGLFMEAGDLDKALIY 47
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BLAST of mRNA_H-paniculata_contig11172.752.1 vs. uniprot
Match: UPI000C1D0272 (probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D0272)

HSP 1 Score: 60.8 bits (146), Expect = 2.510e-10
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 QAQGMLPEAKRCYLEAIRIKPDFSIAWSNLAGIFKEEGNLN 123
            +AQG++ EA  CY+EA+RI+P F+IAWSNLAG+F + G+LN
Sbjct:    2 KAQGLMQEAYSCYIEALRIQPTFAIAWSNLAGLFMDAGDLN 42
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BLAST of mRNA_H-paniculata_contig11172.752.1 vs. uniprot
Match: A0A5D2L2R4_GOSTO (Uncharacterized protein n=3 Tax=Gossypium TaxID=3633 RepID=A0A5D2L2R4_GOSTO)

HSP 1 Score: 62.0 bits (149), Expect = 9.970e-10
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 QAQGMLPEAKRCYLEAIRIKPDFSIAWSNLAGIFKEEGNLNTAIAY 138
            +AQG++ EA  CYLEA+ I+P F+IAWSNLAG+F + G+LN A  Y
Sbjct:  213 KAQGLVQEAYSCYLEALCIQPTFAIAWSNLAGLFMDSGDLNRAFQY 258
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BLAST of mRNA_H-paniculata_contig11172.752.1 vs. uniprot
Match: W9S6L1_9ROSA (Protein O-GlcNAc transferase n=2 Tax=Morus notabilis TaxID=981085 RepID=W9S6L1_9ROSA)

HSP 1 Score: 60.5 bits (145), Expect = 5.370e-9
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   19 PEAKRCYLEAIRIKPDFSIAWSNLAGIFKEEGNLNTAIAY 138
            P A  CYLEA+RI+P F+IAWSNLAG+F E G+LN A+ Y
Sbjct:  246 PSAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 285
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BLAST of mRNA_H-paniculata_contig11172.752.1 vs. uniprot
Match: A0A5B6WG78_9ROSI (Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY n=2 Tax=Gossypium TaxID=3633 RepID=A0A5B6WG78_9ROSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.360e-8
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   22 EAKRCYLEAIRIKPDFSIAWSNLAGIFKEEGNLNTAIAY 138
            +A  CYLEA+RI+P+F+IAWSNLAG+F E G+LN A+ Y
Sbjct:    3 DAYNCYLEALRIQPNFAIAWSNLAGLFMEAGDLNRALQY 41
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BLAST of mRNA_H-paniculata_contig11172.752.1 vs. uniprot
Match: A0A3N6QW29_BRACR (Uncharacterized protein (Fragment) n=2 Tax=Brassicales TaxID=3699 RepID=A0A3N6QW29_BRACR)

HSP 1 Score: 58.9 bits (141), Expect = 1.860e-8
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   22 EAKRCYLEAIRIKPDFSIAWSNLAGIFKEEGNLNTAIAY 138
            +A  CYLEA+RI+P F+IAWSNLAG+F E G+LN A+ Y
Sbjct:   12 QAYSCYLEAVRIQPTFAIAWSNLAGLFMESGDLNRALQY 50
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BLAST of mRNA_H-paniculata_contig11172.752.1 vs. uniprot
Match: A0A6P6AAK2_DURZI (Protein O-GlcNAc transferase n=3 Tax=Malvaceae TaxID=3629 RepID=A0A6P6AAK2_DURZI)

HSP 1 Score: 58.2 bits (139), Expect = 3.480e-8
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   25 AKRCYLEAIRIKPDFSIAWSNLAGIFKEEGNLNTAIAY 138
            A  CYLEA+RI+P+F+IAWSNLAG+F E G LN A+ Y
Sbjct:    2 AYNCYLEALRIQPNFAIAWSNLAGLFMEAGELNRALQY 39
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BLAST of mRNA_H-paniculata_contig11172.752.1 vs. uniprot
Match: UPI0011DF6022 (probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X2 n=1 Tax=Cannabis sativa TaxID=3483 RepID=UPI0011DF6022)

HSP 1 Score: 58.2 bits (139), Expect = 3.480e-8
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   22 EAKRCYLEAIRIKPDFSIAWSNLAGIFKEEGNLNTAIAY 138
            +A  CYL+A+RI+P F+IAWSNLAGIF E G+LN A+ Y
Sbjct:    2 QAYSCYLDALRIQPTFAIAWSNLAGIFMESGDLNRALQY 40
[Close]
BLAST of mRNA_H-paniculata_contig11172.752.1 vs. uniprot
Match: A0A7J8W173_9ROSI (Uncharacterized protein n=1 Tax=Gossypium klotzschianum TaxID=34286 RepID=A0A7J8W173_9ROSI)

HSP 1 Score: 57.8 bits (138), Expect = 4.210e-8
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   13 MLPEAKRCYLEAIRIKPDFSIAWSNLAGIFKEEGNLNTAI 132
            +L EA  CYLEA+RI+P F+IAWSNLAG+F + G+LN A+
Sbjct:   43 LLMEAYSCYLEALRIQPTFAIAWSNLAGLFMDSGDLNRAL 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11172.752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A7S2WWK3_9STRA4.140e-1173.68Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A0A9NUZ7_ARUDO1.250e-1056.52Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
UPI000C1D02722.510e-1060.98probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
A0A5D2L2R4_GOSTO9.970e-1058.70Uncharacterized protein n=3 Tax=Gossypium TaxID=36... [more]
W9S6L1_9ROSA5.370e-965.00Protein O-GlcNAc transferase n=2 Tax=Morus notabil... [more]
A0A5B6WG78_9ROSI1.360e-864.10Probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
A0A3N6QW29_BRACR1.860e-864.10Uncharacterized protein (Fragment) n=2 Tax=Brassic... [more]
A0A6P6AAK2_DURZI3.480e-865.79Protein O-GlcNAc transferase n=3 Tax=Malvaceae Tax... [more]
UPI0011DF60223.480e-864.10probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
A0A7J8W173_9ROSI4.210e-862.50Uncharacterized protein n=1 Tax=Gossypium klotzsch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11172contigH-paniculata_contig11172:194..1345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.8
Seed ortholog evalue2.7e-07
Seed eggNOG ortholog981085.XP_010102180.1
KEGG rclassRC00005,RC00059
KEGG koko:K09667
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,ko04931,map00514,map04931
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006464,GO:0006486,GO:0006493,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0016740,GO:0016757,GO:0019538,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0070085,GO:0071704,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC
EggNOG OGs37RD4@33090,3G7FD@35493,4JNCY@91835,COG3914@1,KOG4626@2759
EC2.4.1.255
COG Functional cat.GOT
CAZyGT41
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko03036
Exons2
Model size213
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11172.752.1prot_H-paniculata_contig11172.752.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11172 206..1345 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928822.939243-UTR-H-paniculata_contig11172:193..2051622928822.939243-UTR-H-paniculata_contig11172:193..205Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11172 194..205 +
1691480633.9481-UTR-H-paniculata_contig11172:193..2051691480633.9481-UTR-H-paniculata_contig11172:193..205Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11172 194..205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928822.954948-CDS-H-paniculata_contig11172:205..3041622928822.954948-CDS-H-paniculata_contig11172:205..304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11172 206..304 +
1691480633.9605553-CDS-H-paniculata_contig11172:205..3041691480633.9605553-CDS-H-paniculata_contig11172:205..304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11172 206..304 +
1622928822.9770923-CDS-H-paniculata_contig11172:1243..13451622928822.9770923-CDS-H-paniculata_contig11172:1243..1345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11172 1244..1345 +
1691480633.9703352-CDS-H-paniculata_contig11172:1243..13451691480633.9703352-CDS-H-paniculata_contig11172:1243..1345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11172 1244..1345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11172.752.1

>prot_H-paniculata_contig11172.752.1 ID=prot_H-paniculata_contig11172.752.1|Name=mRNA_H-paniculata_contig11172.752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MLPEAKRCYLEAIRIKPDFSIAWSNLAGIFKEEGNLNTAIAYYREAIRLC
PEFADAHSNLGNVLKV*
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mRNA from alignment at H-paniculata_contig11172:194..1345+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11172.752.1 ID=mRNA_H-paniculata_contig11172.752.1|Name=mRNA_H-paniculata_contig11172.752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1152bp|location=Sequence derived from alignment at H-paniculata_contig11172:194..1345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCACAGGGCATGCTGCCGGAGGCTAAACGGTGCTATTTAGAGGCTAT
CAGGATCAAGCCTGACTTTTCCATCGCCTGGAGTAATCTAGCGGGCATAT
TCAAGGAGGAGGTAGGGCGTTCGCTTTGGTCTTGGTGTACTTTAAACAAT
ATGTTTGTCCTTGACTTGTGTACAACTGCTCGCTACGCTCGGAAGTGGCT
TGCTATATATAATACTCGCGCCAACGAAGGTTATCGTTTCAAAATGTAGT
TCAACCCAGTATCTTGAAAGCTATTCGGAATCGGCGACTATGACGATAGA
CTTGACGTATTATTTCTCCAGGGAGGAATGCTGTATGCAAGTGTTTTTTT
GGGGGGTGGCCTGATAAATGAGGATGGATAGTTGACTCTTGAAACATTTT
TAACTTCATTTTTTAAGTGTTGTTTTGAGGTGTAGAATATCACAAAATGT
TATAATATCACACCGAACAAACATATAGTAATTTACCAGGTTGCATGACC
ATTCGACTGCCGTCTAGAGTGTCATTCTATATCAACGCGTGTGTATACGC
ATGTCCAACACCCGTTACATGTACACGAGGCTTGTGGGTGGGAGAAACGA
GATATGTATATATATATATTCTTTCATCCGTTGACGTACACTACTACATA
CGCAAGTGAGACAGTAGCGATTCTCCGTTTTGAAGGTTGCAGCCCATCTT
GTGCCTGGTCAAAGAGGTGCGAGTATTCCTGGTATTACTTGGTCATGATC
AGACCAAGTAATATGACATGTGATCAGTATCCTGGCCTCCTTTCCCCTCC
CTATATCGAAGATGTTGATGTGTTCGCCATATCAAAAGCGAATGGAACAA
CGCGCAGGAGTAAAAAATGTCATAATCTTGGGCTCACGCCAGGGTATATA
CACCCACATCTTATGTCTTATATATAAGATTGCCTGCTAGTTGCGGTATT
AGCGTTCCCAAAAGTCAATTTACCCCTGCTTCGAGATGCCACGGACGATC
AACATGGGCGAGTAAAAAATGTGTCTATTTAAATCTGTCTTCATGAACAG
GGCAATTTGAACACCGCCATAGCGTACTACCGGGAGGCGATAAGGCTCTG
TCCGGAGTTTGCGGATGCACACAGCAATCTCGGAAACGTCCTCAAGGTAT
GA
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Coding sequence (CDS) from alignment at H-paniculata_contig11172:194..1345+

>mRNA_H-paniculata_contig11172.752.1 ID=mRNA_H-paniculata_contig11172.752.1|Name=mRNA_H-paniculata_contig11172.752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig11172:194..1345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCCGGAGGCTAAACGGTGCTATTTAGAGGCTATCAGGATCAAGCC
TGACTTTTCCATCGCCTGGAGTAATCTAGCGGGCATATTCAAGGAGGAGA
TGCTGCCGGAGGCTAAACGGTGCTATTTAGAGGCTATCAGGATCAAGCCT
GACTTTTCCATCGCCTGGAGTAATCTAGCGGGCATATTCAAGGAGGAGGG
CAATTTGAACACCGCCATAGCGTACTACCGGGAGGCGATAAGGCTCTGTC
CGGAGTTTGCGGATGCACACAGCAATCTCGGAAACGTCCTCAAGGTATGA
GGCAATTTGAACACCGCCATAGCGTACTACCGGGAGGCGATAAGGCTCTG
TCCGGAGTTTGCGGATGCACACAGCAATCTCGGAAACGTCCTCAAGGTAT
GA
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