mRNA_H-paniculata_contig11051.684.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11051.684.1
Unique NamemRNA_H-paniculata_contig11051.684.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11051.684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11051contigH-paniculata_contig11051:6085..6662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size235
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928812.8741117-CDS-H-paniculata_contig11051:6084..61661622928812.8741117-CDS-H-paniculata_contig11051:6084..6166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11051 6085..6166 +
1691480629.7635238-CDS-H-paniculata_contig11051:6084..61661691480629.7635238-CDS-H-paniculata_contig11051:6084..6166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11051 6085..6166 +
1622928812.8893578-CDS-H-paniculata_contig11051:6509..66611622928812.8893578-CDS-H-paniculata_contig11051:6509..6661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11051 6510..6661 +
1691480629.7723417-CDS-H-paniculata_contig11051:6509..66611691480629.7723417-CDS-H-paniculata_contig11051:6509..6661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11051 6510..6661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11051.684.1prot_H-paniculata_contig11051.684.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11051 6085..6661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11051.684.1

>prot_H-paniculata_contig11051.684.1 ID=prot_H-paniculata_contig11051.684.1|Name=mRNA_H-paniculata_contig11051.684.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
VKDSLHPRATVAIMVPHPWHLHAGRIHSTLTHASVGLHVEDHPLLLQYKG
MRAGRTSQNAVNHLRYNADMVMLAHNDP
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mRNA from alignment at H-paniculata_contig11051:6085..6662+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11051.684.1 ID=mRNA_H-paniculata_contig11051.684.1|Name=mRNA_H-paniculata_contig11051.684.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=578bp|location=Sequence derived from alignment at H-paniculata_contig11051:6085..6662+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAAGACAGCCTGCACCCCCGTGCGACTGTTGCAATCATGGTACCTCA
CCCTTGGCATCTGCACGCTGGACGCATCCACAGTGAGTATTTTGTCTTTG
CTGTTTGTGCAACTTTATAAAAAATACGCCATTGCTGTAACATGGAAGCC
CATCGACCGCTTCAGCCCACTATGCCCAATGGTTTATGCGAGGAGAAAGT
AGCGTGTACACGGCATAATAGAGTGTGCAACATGATTGCATCAAGGTGTA
ATATGAACGTGTGATTGGGGTATCACTGGACGTCCATTCCACGTTTTTTC
ACATGTTGCACGATAAACTCCGCCTGTTAAGGCATATGAACGACCACGGA
AGTATTGGAGCACATACACATCGGGTGTATTCCAAACATCAACGCATTTC
GTCGATTTTCTTACTGTGTTTGCAGGTACTCTGACCCATGCATCGGTAGG
ATTGCACGTTGAGGATCACCCACTTCTCCTCCAGTACAAGGGTATGAGGG
CCGGGCGCACATCGCAGAATGCTGTCAATCATCTACGTTACAATGCAGAC
ATGGTGATGTTGGCACACAACGACCCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11051:6085..6662+

>mRNA_H-paniculata_contig11051.684.1 ID=mRNA_H-paniculata_contig11051.684.1|Name=mRNA_H-paniculata_contig11051.684.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig11051:6085..6662+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAAGACAGCCTGCACCCCCGTGCGACTGTTGCAATCATGGTACCTCA
CCCTTGGCATCTGCACGCTGGACGCATCCACAGTGAAAGACAGCCTGCAC
CCCCGTGCGACTGTTGCAATCATGGTACCTCACCCTTGGCATCTGCACGC
TGGACGCATCCACAGTACTCTGACCCATGCATCGGTAGGATTGCACGTTG
AGGATCACCCACTTCTCCTCCAGTACAAGGGTATGAGGGCCGGGCGCACA
TCGCAGAATGCTGTCAATCATCTACGTTACAATGCAGACATGGTGATGTT
GGCACACAACGACCCGGTACTCTGACCCATGCATCGGTAGGATTGCACGT
TGAGGATCACCCACTTCTCCTCCAGTACAAGGGTATGAGGGCCGGGCGCA
CATCGCAGAATGCTGTCAATCATCTACGTTACAATGCAGACATGGTGATG
TTGGCACACAACGACCCG
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