mRNA_H-paniculata_contig11007.658.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11007.658.1
Unique NamemRNA_H-paniculata_contig11007.658.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11007.658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11007contigH-paniculata_contig11007:3804..4386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size583
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11007.658.1prot_H-paniculata_contig11007.658.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11007 3824..4198 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928808.4192274-UTR-H-paniculata_contig11007:3803..38231622928808.4192274-UTR-H-paniculata_contig11007:3803..3823Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11007 3804..3823 +
1691480627.9593573-UTR-H-paniculata_contig11007:3803..38231691480627.9593573-UTR-H-paniculata_contig11007:3803..3823Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11007 3804..3823 +
1622928808.4458573-UTR-H-paniculata_contig11007:4198..43861622928808.4458573-UTR-H-paniculata_contig11007:4198..4386Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11007 4199..4386 +
1691480627.97913-UTR-H-paniculata_contig11007:4198..43861691480627.97913-UTR-H-paniculata_contig11007:4198..4386Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11007 4199..4386 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928808.4313967-CDS-H-paniculata_contig11007:3823..41981622928808.4313967-CDS-H-paniculata_contig11007:3823..4198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11007 3824..4198 +
1691480627.9700413-CDS-H-paniculata_contig11007:3823..41981691480627.9700413-CDS-H-paniculata_contig11007:3823..4198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11007 3824..4198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11007.658.1

>prot_H-paniculata_contig11007.658.1 ID=prot_H-paniculata_contig11007.658.1|Name=mRNA_H-paniculata_contig11007.658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MIKTGWTAAGNVPRPATAICLPAIVIALDLDQKYTQNVMPLLPTYRPRRR
LHARIRILCMLHGGRSSMGCPGPHYHDYGRLQRRSANIITKMARRLLPER
ELVKVHPRSIDGTTALVVPHTHTF*
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mRNA from alignment at H-paniculata_contig11007:3804..4386+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11007.658.1 ID=mRNA_H-paniculata_contig11007.658.1|Name=mRNA_H-paniculata_contig11007.658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=583bp|location=Sequence derived from alignment at H-paniculata_contig11007:3804..4386+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCCTACTCGTATGCCACATGATAAAAACGGGTTGGACAGCAGCAGGC
AATGTTCCACGTCCCGCAACCGCAATATGTTTACCAGCAATCGTAATCGC
CCTTGATCTGGACCAAAAATATACTCAAAACGTAATGCCTCTATTACCGA
CGTACCGCCCAAGACGTCGTTTACATGCCAGAATCCGCATACTATGTATG
CTTCACGGGGGGAGATCTTCGATGGGTTGTCCGGGGCCTCATTACCATGA
CTACGGGCGACTACAGAGGAGGTCGGCAAACATAATAACGAAGATGGCTA
GAAGGCTTCTACCAGAGCGTGAACTAGTTAAGGTGCACCCAAGATCTATT
GATGGAACTACAGCACTAGTTGTACCACACACACACACCTTTTGATGAAA
TCTGATAAGAAGAGACAAGGCTTGACAATAACGTACTTGTACGCACAGTC
CAGCACAGTACGAGTACATAGCACAGCATCAACATGTCATACTCGAAACT
CAGAACGACTCAAACGCACCTTGATGCCACGCCGGAACGAGTGCCCGCTA
ACATCCAACTCTGTGCGCGGCTTCCACTTTGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig11007:3804..4386+

>mRNA_H-paniculata_contig11007.658.1 ID=mRNA_H-paniculata_contig11007.658.1|Name=mRNA_H-paniculata_contig11007.658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig11007:3804..4386+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATAAAAACGGGTTGGACAGCAGCAGGCAATGTTCCACGTCCCGCAAC
CGCAATATGTTTACCAGCAATCGTAATCGCCCTTGATCTGGACCAAAAAT
ATACTCAAAACGTAATGCCTCTATTACCGACGTACCGCCCAAGACGTCGT
TTACATGCCAGAATCCGCATACTATGTATGCTTCACGGGGGGAGATCTTC
GATGGGTTGTCCGGGGCCTCATTACCATGACTACGGGCGACTACAGAGGA
GGTCGGCAAACATAATAACGAAGATGGCTAGAAGGCTTCTACCAGAGCGT
GAACTAGTTAAGGTGCACCCAAGATCTATTGATGGAACTACAGCACTAGT
TGTACCACACACACACACCTTTTGAATGATAAAAACGGGTTGGACAGCAG
CAGGCAATGTTCCACGTCCCGCAACCGCAATATGTTTACCAGCAATCGTA
ATCGCCCTTGATCTGGACCAAAAATATACTCAAAACGTAATGCCTCTATT
ACCGACGTACCGCCCAAGACGTCGTTTACATGCCAGAATCCGCATACTAT
GTATGCTTCACGGGGGGAGATCTTCGATGGGTTGTCCGGGGCCTCATTAC
CATGACTACGGGCGACTACAGAGGAGGTCGGCAAACATAATAACGAAGAT
GGCTAGAAGGCTTCTACCAGAGCGTGAACTAGTTAAGGTGCACCCAAGAT
CTATTGATGGAACTACAGCACTAGTTGTACCACACACACACACCTTTTGA
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