mRNA_H-paniculata_contig11003.654.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11003.654.1
Unique NamemRNA_H-paniculata_contig11003.654.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11003.654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11003contigH-paniculata_contig11003:4236..5465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1006
Cds size1005
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928807.6932316-CDS-H-paniculata_contig11003:4236..50251622928807.6932316-CDS-H-paniculata_contig11003:4236..5025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11003 4237..5025 -
1691480627.821723-CDS-H-paniculata_contig11003:4236..50251691480627.821723-CDS-H-paniculata_contig11003:4236..5025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11003 4237..5025 -
1622928807.7073917-CDS-H-paniculata_contig11003:5249..54651622928807.7073917-CDS-H-paniculata_contig11003:5249..5465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11003 5250..5465 -
1691480627.8297784-CDS-H-paniculata_contig11003:5249..54651691480627.8297784-CDS-H-paniculata_contig11003:5249..5465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11003 5250..5465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11003.654.1prot_H-paniculata_contig11003.654.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11003 4237..5465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11003.654.1

>prot_H-paniculata_contig11003.654.1 ID=prot_H-paniculata_contig11003.654.1|Name=mRNA_H-paniculata_contig11003.654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=335bp
GKPRSTFFSKLSDGSGSQSSTTDKGTRNAVLTERVRKASPAYSGMSPGFL
TARSFTSSAVGPKLAATPKAEKVKAQGRAPLSSKIHTTPRPYSSSYQMRC
EEKAKELVNDGITPATRIQTTLSSERRRSIAPERESSNRGARAGGSAVKV
TGVWHSTGGNGTRGRCLDRRDDHQTRPAMTVAAATAALRSRGSWTNTLRR
EDEAGTGDDVKNSGWGSHANRLRIAPCTSKEFASIDTSSSLATNVRGGSA
TIAQEPVKQDASCFVPYSKDIKEGGEGGHGHNSQSSDGTHGASAVAVAAA
AAASTMAFRQTWQDCEGDAHAVSVIRLAENAVTSR
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mRNA from alignment at H-paniculata_contig11003:4236..5465-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11003.654.1 ID=mRNA_H-paniculata_contig11003.654.1|Name=mRNA_H-paniculata_contig11003.654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig11003:4236..5465- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAAGCCACGGTCGACGTTTTTCTCCAAGTTGAGCGACGGCTCAGGTAG
CCAGAGTTCGACGACGGACAAGGGTACGCGCAACGCCGTTTTGACTGAGC
GAGTTCGAAAGGCTTCTCCTGCATACAGCGGCATGAGTCCGGGTTTTCTG
ACGGCGCGGAGTTTCACGAGTAGCGCAGTTGGACCGAAATTGGCAGCTAC
CCCAAAAGCAGAGAAGGTGGGGTCGTGTTTTGTGTTGTTTTGGGAGATAG
TAAGAGTTGTTTTCTCGCTCTCTCTCTCTGCGCATGTTTAGTTGTCCTTC
CCTCTGATGATTTTTGCCCCATCCAGCTTCTACACACAAGCTATGTCGGA
TTTTTGTTTTATGATGATCTCTATTTCTCTGCCCGCCGTATCTTGGGGTC
ACCTTTTACCTGTTTTTCGTCCCGCCGTCCCGTCGCCCAGGTGAAGGCTC
AAGGGCGCGCTCCGTTAAGCAGCAAAATCCACACGACTCCGCGCCCATAC
TCAAGTTCTTACCAAATGAGATGCGAGGAGAAAGCCAAAGAACTTGTGAA
CGATGGCATTACCCCTGCGACTAGGATACAGACGACGCTGTCCTCTGAAA
GGAGGCGCAGCATTGCGCCAGAGCGAGAATCGTCGAACCGCGGGGCGCGC
GCAGGCGGCTCGGCCGTTAAGGTGACCGGCGTCTGGCATAGCACTGGTGG
GAATGGAACGAGGGGTCGATGCTTGGATCGCCGTGATGATCATCAAACAC
GGCCTGCGATGACGGTGGCGGCAGCTACCGCGGCGTTGAGAAGCCGTGGC
TCATGGACAAATACATTGAGGCGCGAGGACGAAGCTGGCACAGGCGATGA
CGTTAAAAACAGTGGGTGGGGAAGTCACGCCAACCGTCTACGCATCGCAC
CCTGCACTTCGAAAGAGTTTGCGTCGATCGACACATCGTCTTCGCTGGCA
ACCAACGTTCGGGGTGGGTCCGCTACTATTGCGCAAGAGCCCGTGAAGCA
GGACGCCTCGTGTTTCGTACCCTACTCGAAAGATATCAAAGAAGGCGGCG
AGGGTGGTCATGGACATAATAGTCAGAGTAGCGACGGAACCCACGGCGCT
TCTGCTGTTGCTGTTGCTGCTGCCGCCGCCGCTTCTACTATGGCCTTCCG
CCAGACCTGGCAAGACTGCGAAGGTGATGCGCATGCTGTCTCTGTGATAC
GTCTGGCCGAGAATGCGGTCACGAGCAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11003:4236..5465-

>mRNA_H-paniculata_contig11003.654.1 ID=mRNA_H-paniculata_contig11003.654.1|Name=mRNA_H-paniculata_contig11003.654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2010bp|location=Sequence derived from alignment at H-paniculata_contig11003:4236..5465- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAAGCCACGGTCGACGTTTTTCTCCAAGTTGAGCGACGGCTCAGGTAG
CCAGAGTTCGACGACGGACAAGGGTACGCGCAACGCCGTTTTGACTGAGC
GAGTTCGAAAGGCTTCTCCTGCATACAGCGGCATGAGTCCGGGTTTTCTG
ACGGCGCGGAGTTTCACGAGTAGCGCAGTTGGACCGAAATTGGCAGCTAC
CCCAAAAGCAGAGAAGGGCAAGCCACGGTCGACGTTTTTCTCCAAGTTGA
GCGACGGCTCAGGTAGCCAGAGTTCGACGACGGACAAGGGTACGCGCAAC
GCCGTTTTGACTGAGCGAGTTCGAAAGGCTTCTCCTGCATACAGCGGCAT
GAGTCCGGGTTTTCTGACGGCGCGGAGTTTCACGAGTAGCGCAGTTGGAC
CGAAATTGGCAGCTACCCCAAAAGCAGAGAAGGTGAAGGCTCAAGGGCGC
GCTCCGTTAAGCAGCAAAATCCACACGACTCCGCGCCCATACTCAAGTTC
TTACCAAATGAGATGCGAGGAGAAAGCCAAAGAACTTGTGAACGATGGCA
TTACCCCTGCGACTAGGATACAGACGACGCTGTCCTCTGAAAGGAGGCGC
AGCATTGCGCCAGAGCGAGAATCGTCGAACCGCGGGGCGCGCGCAGGCGG
CTCGGCCGTTAAGGTGACCGGCGTCTGGCATAGCACTGGTGGGAATGGAA
CGAGGGGTCGATGCTTGGATCGCCGTGATGATCATCAAACACGGCCTGCG
ATGACGGTGGCGGCAGCTACCGCGGCGTTGAGAAGCCGTGGCTCATGGAC
AAATACATTGAGGCGCGAGGACGAAGCTGGCACAGGCGATGACGTTAAAA
ACAGTGGGTGGGGAAGTCACGCCAACCGTCTACGCATCGCACCCTGCACT
TCGAAAGAGTTTGCGTCGATCGACACATCGTCTTCGCTGGCAACCAACGT
TCGGGGTGGGTCCGCTACTATTGCGCAAGAGCCCGTGAAGCAGGACGCCT
CGTGTTTCGTACCCTACTCGAAAGATATCAAAGAAGGCGGCGAGGGTGGT
CATGGACATAATAGTCAGAGTAGCGACGGAACCCACGGCGCTTCTGCTGT
TGCTGTTGCTGCTGCCGCCGCCGCTTCTACTATGGCCTTCCGCCAGACCT
GGCAAGACTGCGAAGGTGATGCGCATGCTGTCTCTGTGATACGTCTGGCC
GAGAATGCGGTCACGAGCAGGGTGAAGGCTCAAGGGCGCGCTCCGTTAAG
CAGCAAAATCCACACGACTCCGCGCCCATACTCAAGTTCTTACCAAATGA
GATGCGAGGAGAAAGCCAAAGAACTTGTGAACGATGGCATTACCCCTGCG
ACTAGGATACAGACGACGCTGTCCTCTGAAAGGAGGCGCAGCATTGCGCC
AGAGCGAGAATCGTCGAACCGCGGGGCGCGCGCAGGCGGCTCGGCCGTTA
AGGTGACCGGCGTCTGGCATAGCACTGGTGGGAATGGAACGAGGGGTCGA
TGCTTGGATCGCCGTGATGATCATCAAACACGGCCTGCGATGACGGTGGC
GGCAGCTACCGCGGCGTTGAGAAGCCGTGGCTCATGGACAAATACATTGA
GGCGCGAGGACGAAGCTGGCACAGGCGATGACGTTAAAAACAGTGGGTGG
GGAAGTCACGCCAACCGTCTACGCATCGCACCCTGCACTTCGAAAGAGTT
TGCGTCGATCGACACATCGTCTTCGCTGGCAACCAACGTTCGGGGTGGGT
CCGCTACTATTGCGCAAGAGCCCGTGAAGCAGGACGCCTCGTGTTTCGTA
CCCTACTCGAAAGATATCAAAGAAGGCGGCGAGGGTGGTCATGGACATAA
TAGTCAGAGTAGCGACGGAACCCACGGCGCTTCTGCTGTTGCTGTTGCTG
CTGCCGCCGCCGCTTCTACTATGGCCTTCCGCCAGACCTGGCAAGACTGC
GAAGGTGATGCGCATGCTGTCTCTGTGATACGTCTGGCCGAGAATGCGGT
CACGAGCAGG
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