mRNA_H-paniculata_contig1100.651.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1100.651.1
Unique NamemRNA_H-paniculata_contig1100.651.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1100.651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1100contigH-paniculata_contig1100:8091..9888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size510
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928807.2319396-CDS-H-paniculata_contig1100:8092..82601622928807.2319396-CDS-H-paniculata_contig1100:8092..8260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1100 8093..8260 -
1691480627.63001-CDS-H-paniculata_contig1100:8092..82601691480627.63001-CDS-H-paniculata_contig1100:8092..8260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1100 8093..8260 -
1622928807.2449949-CDS-H-paniculata_contig1100:9549..98881622928807.2449949-CDS-H-paniculata_contig1100:9549..9888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1100 9550..9888 -
1691480627.6401675-CDS-H-paniculata_contig1100:9549..98881691480627.6401675-CDS-H-paniculata_contig1100:9549..9888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1100 9550..9888 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1100.651.1prot_H-paniculata_contig1100.651.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1100 8093..9888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1100.651.1

>prot_H-paniculata_contig1100.651.1 ID=prot_H-paniculata_contig1100.651.1|Name=mRNA_H-paniculata_contig1100.651.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp
RSRKSGIRFWRKDDDSGGNSDNYPSERAGVVENDAWDKRQQPGHYTASSA
ARERGGGGSVIRRSDGNISGVIVTERRSNPVGRGGGDGRSARAKGASRRP
PESVAESRYQHNKLTEGQARANMERQVGQDEKKMRGRDPVIGGGQLRGCG
RNNPVASGGQFRGCGGNEQ
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mRNA from alignment at H-paniculata_contig1100:8091..9888-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1100.651.1 ID=mRNA_H-paniculata_contig1100.651.1|Name=mRNA_H-paniculata_contig1100.651.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1798bp|location=Sequence derived from alignment at H-paniculata_contig1100:8091..9888- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTAGTAGGAAATCAGGAATTCGATTTTGGCGCAAAGATGATGATAGCGG
CGGTAATAGTGATAATTATCCTAGTGAGAGGGCGGGTGTTGTGGAAAATG
ACGCTTGGGACAAACGGCAGCAGCCGGGACACTACACAGCATCATCAGCA
GCAAGGGAGAGAGGGGGGGGCGGCTCTGTCATTCGCCGGAGCGACGGTAA
TATTAGCGGGGTTATTGTGACCGAACGTAGGAGTAACCCCGTCGGCCGTG
GGGGCGGTGACGGTAGGAGCGCCAGGGCAAAGGGAGCAAGCAGGAGGCCA
CCAGAGTCGGTGGCGGAGTCTCGTTACCAGCATAACAAGGTGACAACTGA
TTAAAGGGGGGCTAAGGGAAGGGGGGGGGGGCTTGGGGACGTAGTCACGT
TTTGCATGCCGTAGTTATTTCTTGGATCATTGTCCTTGCGTCCTCGGGAC
GATGGTGATATCTGAGGGAACGACAACCAGCAGGAGAGTATCGGAAAAGG
TAAGTAGGAGATTGCCCCTATCGGCTAACCCTGAGAGGTACATTAAACTT
TTATGCCCTGTGCGACGTTGAGACAGACCACTGCCTATCTTGGAGTCTTT
TCACGTCAATTTCGTTTTCAGGGAGGGGAGGGGGGACAGTTTGAAGGACC
CAAGAAACAAAAGTTTACACAGGTTGTCAAGGAGGCTTTTCGGGAAAAAA
TGAGTGGTGACGTTCAGTTTCATCAGACATTTCTCTCAGATCTCCGGAGA
AGGCAGAAGCTAACCTTATTTTCGACACTTTTTTCTACAGGAAAGGGGGG
GAATAACTGAAATTCGTGTATTTGTTGTGGACGGTATGGTGCACGTATGT
GGAGGGTTTCACCGTTATGATGGTTCACCAACAATTATCGCACCTCACTC
AGTACGTATCCGTCACATGTCACCCACAACAAGCTGTCACATATCTTACC
CCGCCGACATAACCAAGCTAAATGTCACTATGCCGAGGTGATGATTGCGG
GGGGGGGGGGCACAGCCTTGCAGCTTAGCAGCAGCAGCTGGAAGTCCCCA
TCACGGGACAGCGGCGGCAAGGTGCCGTCAGCTGCCGCTGCAAGACTGTT
CCATGCTGCTGCCGTTGTCATTGATGACCATGGCTAAGATGATGAGTCGA
CCCCGCTCACATCTTGAAGCATGCTTCGCGGATGGGTGTATGTAGTATTT
GACGCTGAGGATGATCAATTGACAAACCTTGCCCCAAGCCCGCCCCCAAC
TGTGAAGGTATTCGATGTAGCTTGACAGCCTGTGGAGGGACATGCGAAAT
ATGATATCTTCCCTTACCCTGCCACCTTATTTTTTTTTTCTTTTTCTCCG
GGTCGCACCTACTATCACGTTGTGTTGAATGCTTTTGTCTTCCCACGACG
TGGACCTGGTACAGTAGATTACTTCTCTTTTTTGCCGAGAATCAGGACAT
GTCTCTCTACAAAACCTAGTAGAAAAATGCAGAGTATTTTATGCTACCAG
CAAACAACGGATCTAAAGCATGAAACTTTCTTCGAAGTAAAAAGCCTAAA
TCCTTACGGGCTTGTTCTCTTGCCCTCTGGGGGGTGGTTCTGGCCGATGC
TAATTGCCCCGGAGGGAATCGATTCCAGCTCACGGAAGGACAGGCTCGAG
CGAATATGGAGCGGCAAGTCGGGCAGGATGAAAAGAAAATGCGAGGGAGA
GATCCAGTGATCGGTGGCGGGCAGTTACGAGGCTGCGGTAGGAATAATCC
AGTGGCGAGCGGCGGGCAATTTCGAGGCTGCGGGGGAAATGAACAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1100:8091..9888-

>mRNA_H-paniculata_contig1100.651.1 ID=mRNA_H-paniculata_contig1100.651.1|Name=mRNA_H-paniculata_contig1100.651.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig1100:8091..9888- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTAGTAGGAAATCAGGAATTCGATTTTGGCGCAAAGATGATGATAGCGG
CGGTAATAGTGATAATTATCCTAGTGAGAGGGCGGGTGTTGTGGAAAATG
ACGCTTGGGACAAACGGCAGCAGCCGGGACACTACACAGCATCATCAGCA
GCAAGGGAGAGAGGGGGGGGCGGCTCTGTCATTCGCCGGAGCGACGGTAA
TATTAGCGGGGTTATTGTGACCGAACGTAGGAGTAACCCCGTCGGCCGTG
GGGGCGGTGACGGTAGGAGCGCCAGGGCAAAGGGAGCAAGCAGGAGGCCA
CCAGAGTCGGTGGCGGAGTCTCGTTACCAGCATAACAAGCGTAGTAGGAA
ATCAGGAATTCGATTTTGGCGCAAAGATGATGATAGCGGCGGTAATAGTG
ATAATTATCCTAGTGAGAGGGCGGGTGTTGTGGAAAATGACGCTTGGGAC
AAACGGCAGCAGCCGGGACACTACACAGCATCATCAGCAGCAAGGGAGAG
AGGGGGGGGCGGCTCTGTCATTCGCCGGAGCGACGGTAATATTAGCGGGG
TTATTGTGACCGAACGTAGGAGTAACCCCGTCGGCCGTGGGGGCGGTGAC
GGTAGGAGCGCCAGGGCAAAGGGAGCAAGCAGGAGGCCACCAGAGTCGGT
GGCGGAGTCTCGTTACCAGCATAACAAGCTCACGGAAGGACAGGCTCGAG
CGAATATGGAGCGGCAAGTCGGGCAGGATGAAAAGAAAATGCGAGGGAGA
GATCCAGTGATCGGTGGCGGGCAGTTACGAGGCTGCGGTAGGAATAATCC
AGTGGCGAGCGGCGGGCAATTTCGAGGCTGCGGGGGAAATGAACAGCTCA
CGGAAGGACAGGCTCGAGCGAATATGGAGCGGCAAGTCGGGCAGGATGAA
AAGAAAATGCGAGGGAGAGATCCAGTGATCGGTGGCGGGCAGTTACGAGG
CTGCGGTAGGAATAATCCAGTGGCGAGCGGCGGGCAATTTCGAGGCTGCG
GGGGAAATGAACAG
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