mRNA_H-paniculata_contig11.647.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig11.647.1 vs. uniprot
Match: A0A6H5K5B5_9PHAE (BAH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5B5_9PHAE) HSP 1 Score: 172 bits (436), Expect = 1.760e-39 Identity = 218/758 (28.76%), Postives = 307/758 (40.50%), Query Frame = 2
Query: 1391 DYTWPEPEQK-------------DGSTVYTQLTINDRASEMNSVKKDLVDAITHGKSQEEIGRLKKKLEKFRRKIFTIVVGDVVEILSGNTSAPHVGTLISFDRASQTCKVQWFYIPREVDKSLVKLLSQREILYSTEMQDTGLA-TIKAKVNVVGELP--ARGLSQTAYLCQRAYISNPGKIVPLPHDLTFGK----------GEQSSNGRQLRRGSSQVS---PSRMPSSPSIKMMKDKPDQREGQERRDGGCGDSGDGDEDGSSTDSDESPVVWLERSKRLGPLYDIEVSPWTGRGEACATPPPEVTRIAVAALASQQLWSTASPLLPPAMLDEYLERATALAPLLPGMIVHILPVGEDDDDQWARDAGRKDSDKARTATPRPRVSSSGHSAVRPNSDNKSSSDNDNIAHPRPAPVALTDMLWGLL-----------VTNPEAPS----------PN-PSGKGIRGRGTGAQPPSPPV-------------------------------------RNARMTATKSVPDGVFPPDAATAAVPSTPTLSSAARDSAPAGEEGS-LAAIGGAHTAA---------PRAEGGELASGVADLEAVTRGGEGAGGSSDRAAMATREDELVWVSGVD---GPVGVARSRVISQDFQEEAMGALRDAQGDTAAALSALRSPEFRAAYAERVEAADDLWTKHQVSAAGKAWERKKRRGRRHLLVGEDTNLGESYSDQEKRFGVEGKKFRTVVDFGFRFPHHRRF 3361
DYTW E++ G VY ++ I D A E+N++K+ L D G +E GR +KL + K FTI +GD +EI SGN + P VG L+ DR ++ +V+W+++ EVD L + + +EIL S + L T+ KV+ V P A+ L YLC R Y IVPL D + K G+ SS G SS + P R +S SI M P Q D+D S +V L+R R GP +D+ V WT PPPE ++A + Q WST + P L +YL RA A+AP++PG IV+I P D QW K RP S S V S+ D A PR +A + WGL+ +T + PS PN P + TG P R ++ P PP++ L S ++GS L + GAH A PR G A + + G + + A AT E+ +VW++ P+ V RSR++ ++F+EEAM L DA+G AL ++S ++ R++ A ++WT QV AA K K RR+ +GE LG+ +D E +GV K FR VVDF RF RF
Sbjct: 217 DYTWFSSEKRVSGGERKHGRGRLGGGRVYDRVRITDHAEEINTLKQQLAD----GSIEESDGR--EKLRELEAKTFTIKIGDTIEIHSGNDAQPFVGKLVLLDRGTRRFRVRWYFVRHEVDAQLAEDMEPKEILLSDCLSSYQLLDTVDRKVDTVRTRPPHAQELPANTYLCYRGYDMKAKMIVPLLEDGSLEKFRRGKPSTRKGQASSRGAVSPGASSAAAAHTPPRASTSSSI-MSPSNPSQE-----------------------DNDPSELVLLQRWNRTGPEFDVYVPKWTEPTRR-TKPPPEEYKVAQSRFDDCQQWSTEALPFEPDALKDYLARAKAIAPIIPGTIVYIRPRP---DGQWG-------DGKTVKQVRRPNGSGGARSVV--------SAGLDTGAGPRLTSMARSTYRWGLVAEPPPPAQKQQLTREQVPSRTEALLVQGAPNIPMMQEPATGNTGVDMQMTPQWFREQQQQQQHVRFEEQRQXQLMXXXXXXXXXXXXYHRRDHISGDSFRPQLQLPPNS---------LLQSNLI------QQGSNLGGLAGAHAMAAQEVAPASKPRGGGNPHALAPSSVP---------GDAMAKEAGATNEESVVWIASPSEGSSPLQVERSRIVRREFEEEAMNILWDARGQFGVALDIVKSKRYQDDLKRRLKNAGEIWTFQQVKAAVKTCT-KLAAERRNEEMGE---LGDECTD-EADYGVASKPFRCVVDFSRRFATLSRF 896 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11.647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11.647.1 >prot_H-paniculata_contig11.647.1 ID=prot_H-paniculata_contig11.647.1|Name=mRNA_H-paniculata_contig11.647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1459bp MSAGNSGNWKATGSINDRINGYSNANNVVQGEQDGGGGRTNAGGGHNQQEback to top mRNA from alignment at H-paniculata_contig11:46001..74937+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11.647.1 ID=mRNA_H-paniculata_contig11.647.1|Name=mRNA_H-paniculata_contig11.647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=28937bp|location=Sequence derived from alignment at H-paniculata_contig11:46001..74937+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11:46001..74937+ >mRNA_H-paniculata_contig11.647.1 ID=mRNA_H-paniculata_contig11.647.1|Name=mRNA_H-paniculata_contig11.647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=8754bp|location=Sequence derived from alignment at H-paniculata_contig11:46001..74937+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |