mRNA_H-paniculata_contig10996.644.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10996.644.1
Unique NamemRNA_H-paniculata_contig10996.644.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10996.644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10996contigH-paniculata_contig10996:6873..7307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size437
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928806.0933096-CDS-H-paniculata_contig10996:6872..72921622928806.0933096-CDS-H-paniculata_contig10996:6872..7292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10996 6873..7292 +
1691480627.0889003-CDS-H-paniculata_contig10996:6872..72921691480627.0889003-CDS-H-paniculata_contig10996:6872..7292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10996 6873..7292 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928806.1076498-UTR-H-paniculata_contig10996:7292..73071622928806.1076498-UTR-H-paniculata_contig10996:7292..7307Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10996 7293..7307 +
1691480627.1083858-UTR-H-paniculata_contig10996:7292..73071691480627.1083858-UTR-H-paniculata_contig10996:7292..7307Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10996 7293..7307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10996.644.1prot_H-paniculata_contig10996.644.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10996 6873..7292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10996.644.1

>prot_H-paniculata_contig10996.644.1 ID=prot_H-paniculata_contig10996.644.1|Name=mRNA_H-paniculata_contig10996.644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
GITTLQRGGGREKRERTRDPCRPGVYRVVDRGIHVTALSKRTGYSLGKHT
RYTGYSLYWETFCCTVGKLCSCPFNALSKRFGLFPVQLFIFVLIKHTFCV
EASNDSVLNFKACPVTSFTPTPHSTQHLHSSCQRTANRQ*
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mRNA from alignment at H-paniculata_contig10996:6873..7307+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10996.644.1 ID=mRNA_H-paniculata_contig10996.644.1|Name=mRNA_H-paniculata_contig10996.644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=435bp|location=Sequence derived from alignment at H-paniculata_contig10996:6873..7307+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAATAACGACCCTGCAAAGGGGGGGAGGGAGGGAGAAACGGGAGCGAAC
TAGAGATCCATGCCGCCCTGGCGTGTATCGGGTAGTTGACAGAGGCATTC
ACGTAACGGCACTGAGCAAACGTACCGGATATAGTTTAGGCAAGCATACC
CGGTATACTGGATACTCACTGTACTGGGAAACGTTTTGTTGTACGGTGGG
GAAACTGTGCAGTTGTCCATTCAACGCTCTTTCAAAACGCTTCGGACTAT
TTCCCGTTCAACTGTTCATTTTCGTTCTAATAAAGCACACGTTTTGTGTT
GAAGCAAGCAACGATTCCGTTCTCAATTTCAAAGCGTGCCCAGTGACCAG
CTTCACTCCTACTCCACACAGTACGCAGCACCTGCATTCATCTTGCCAGC
GGACAGCAAATAGACAATGATAAAGCGGAAGGCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig10996:6873..7307+

>mRNA_H-paniculata_contig10996.644.1 ID=mRNA_H-paniculata_contig10996.644.1|Name=mRNA_H-paniculata_contig10996.644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig10996:6873..7307+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAATAACGACCCTGCAAAGGGGGGGAGGGAGGGAGAAACGGGAGCGAAC
TAGAGATCCATGCCGCCCTGGCGTGTATCGGGTAGTTGACAGAGGCATTC
ACGTAACGGCACTGAGCAAACGTACCGGATATAGTTTAGGCAAGCATACC
CGGTATACTGGATACTCACTGTACTGGGAAACGTTTTGTTGTACGGTGGG
GAAACTGTGCAGTTGTCCATTCAACGCTCTTTCAAAACGCTTCGGACTAT
TTCCCGTTCAACTGTTCATTTTCGTTCTAATAAAGCACACGTTTTGTGTT
GAAGCAAGCAACGATTCCGTTCTCAATTTCAAAGCGTGCCCAGTGACCAG
CTTCACTCCTACTCCACACAGTACGCAGCACCTGCATTCATCTTGCCAGC
GGACAGCAAATAGACAATGAGGAATAACGACCCTGCAAAGGGGGGGAGGG
AGGGAGAAACGGGAGCGAACTAGAGATCCATGCCGCCCTGGCGTGTATCG
GGTAGTTGACAGAGGCATTCACGTAACGGCACTGAGCAAACGTACCGGAT
ATAGTTTAGGCAAGCATACCCGGTATACTGGATACTCACTGTACTGGGAA
ACGTTTTGTTGTACGGTGGGGAAACTGTGCAGTTGTCCATTCAACGCTCT
TTCAAAACGCTTCGGACTATTTCCCGTTCAACTGTTCATTTTCGTTCTAA
TAAAGCACACGTTTTGTGTTGAAGCAAGCAACGATTCCGTTCTCAATTTC
AAAGCGTGCCCAGTGACCAGCTTCACTCCTACTCCACACAGTACGCAGCA
CCTGCATTCATCTTGCCAGCGGACAGCAAATAGACAATGA
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