mRNA_H-paniculata_contig10985.637.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10985.637.1
Unique NamemRNA_H-paniculata_contig10985.637.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig10985.637.1 vs. uniprot
Match: A0A6H5KHP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP7_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 1.570e-60
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 
Query:    1 QMDEFNEPGSSKFLFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 318
            QMDEFNEPGSSKFLFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK
Sbjct:  583 QMDEFNEPGSSKFLFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 688
[Close]
BLAST of mRNA_H-paniculata_contig10985.637.1 vs. uniprot
Match: F0YAG5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAG5_AURAN)

HSP 1 Score: 191 bits (486), Expect = 1.450e-55
Identity = 94/106 (88.68%), Postives = 100/106 (94.34%), Query Frame = 1 
Query:    1 QMDEFNEPGSSKFLFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 318
            QMD FN PGS KF FLLSTRAGGLGINLATAD+V+LYDSDWNPQVDLQAMDRAHRIGQTKPV VFRF+TEGTVEEKI+ERADRKLFLDAAVIQQGRLAE+NA+L K
Sbjct:  488 QMDVFNAPGSEKFAFLLSTRAGGLGINLATADIVVLYDSDWNPQVDLQAMDRAHRIGQTKPVTVFRFVTEGTVEEKIIERADRKLFLDAAVIQQGRLAEQNAALGK 593
[Close]
BLAST of mRNA_H-paniculata_contig10985.637.1 vs. uniprot
Match: A0A448YY09_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY09_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.140e-55
Identity = 96/106 (90.57%), Postives = 102/106 (96.23%), Query Frame = 1 
Query:    1 QMDEFNEPGSSKFLFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 318
            QMDEFN  GSSKFLFLLSTRAGGLGINLATAD+V+LYDSDWNPQVDLQAMDRAHRIGQ KPV+VFRFITEGTVEEKI+ERADRKLFLDAAVIQQGRLAE+N SL+K
Sbjct:  303 QMDEFNAEGSSKFLFLLSTRAGGLGINLATADIVVLYDSDWNPQVDLQAMDRAHRIGQKKPVQVFRFITEGTVEEKIIERADRKLFLDAAVIQQGRLAEQNTSLNK 408
[Close]
BLAST of mRNA_H-paniculata_contig10985.637.1 vs. uniprot
Match: A0A1E7ETM7_9STRA (SNF2_N-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ETM7_9STRA)

HSP 1 Score: 193 bits (490), Expect = 4.880e-55
Identity = 95/106 (89.62%), Postives = 102/106 (96.23%), Query Frame = 1 
Query:    1 QMDEFNEPGSSKFLFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 318
            QMDEFN  GS KFLFLLSTRAGGLGINLATAD+V+LYDSDWNPQVDLQAMDRAHRIGQ KPV+VFRFITEGTVEEKI+ERADRKLFLDAAVIQQGRLAE+NA++DK
Sbjct:  368 QMDEFNAEGSPKFLFLLSTRAGGLGINLATADIVVLYDSDWNPQVDLQAMDRAHRIGQKKPVQVFRFITEGTVEEKIIERADRKLFLDAAVIQQGRLAEQNAAVDK 473
[Close]
BLAST of mRNA_H-paniculata_contig10985.637.1 vs. uniprot
Match: B7G2T7_PHATC (Imitation switch isoform 1, alias nucleosome remodeling factor 140 kDa subunit n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2T7_PHATC)

HSP 1 Score: 193 bits (490), Expect = 7.100e-55
Identity = 95/106 (89.62%), Postives = 103/106 (97.17%), Query Frame = 1 
Query:    1 QMDEFNEPGSSKFLFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 318
            QMDEFN  GSSKF FLLSTRAGGLGINLATAD+VILYDSDWNPQVDLQAMDRAHRIGQTKPV+VFRF+TEGTVEEKI+ERADRKLFLDAAVIQQGRLAE+++SL+K
Sbjct:  516 QMDEFNAEGSSKFAFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAMDRAHRIGQTKPVQVFRFVTEGTVEEKIIERADRKLFLDAAVIQQGRLAEQHSSLEK 621
[Close]
BLAST of mRNA_H-paniculata_contig10985.637.1 vs. uniprot
Match: F0YAG6_AURAN (Uncharacterized protein RUV1 n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAG6_AURAN)

HSP 1 Score: 191 bits (486), Expect = 2.440e-54
Identity = 94/106 (88.68%), Postives = 100/106 (94.34%), Query Frame = 1 
Query:    1 QMDEFNEPGSSKFLFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 318
            QMD FN PGS KF FLLSTRAGGLGINLATAD+V+LYDSDWNPQVDLQAMDRAHRIGQTKPV VFRF+TEGTVEEKI+ERADRKLFLDAAVIQQGRLAE+NA+L K
Sbjct:  488 QMDVFNAPGSEKFAFLLSTRAGGLGINLATADIVVLYDSDWNPQVDLQAMDRAHRIGQTKPVTVFRFVTEGTVEEKIIERADRKLFLDAAVIQQGRLAEQNAALGK 593
[Close]
BLAST of mRNA_H-paniculata_contig10985.637.1 vs. uniprot
Match: A0A1Z5JHP3_FISSO (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHP3_FISSO)

HSP 1 Score: 191 bits (486), Expect = 2.710e-54
Identity = 95/106 (89.62%), Postives = 102/106 (96.23%), Query Frame = 1 
Query:    1 QMDEFNEPGSSKFLFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 318
            QMDEFN  GS KF FLLSTRAGGLGINLATAD+VILYDSDWNPQVDLQAMDRAHRIGQTKPV+VFRFITEGTVEEKI+ERADRKLFLDAAVIQQGRLAE+++SL+K
Sbjct:  524 QMDEFNRVGSPKFAFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAMDRAHRIGQTKPVQVFRFITEGTVEEKIIERADRKLFLDAAVIQQGRLAEQHSSLEK 629
[Close]
BLAST of mRNA_H-paniculata_contig10985.637.1 vs. uniprot
Match: B8C3Q3_THAPS (Atpase-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3Q3_THAPS)

HSP 1 Score: 190 bits (483), Expect = 3.790e-54
Identity = 94/115 (81.74%), Postives = 104/115 (90.43%), Query Frame = 1 
Query:    1 QMDEFNEPGSSKFLFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDKVQKKWRIAF 345
            QM+EFN PGSSKF FLLSTRAGGLGINLATAD+VIL+DSDWNPQVDLQAMDRAHRIGQTKPV+VFRFI+EGTVEEKI+ERAD+KLFLDAAVIQQGRLAE+N  L K +    + F
Sbjct:  367 QMEEFNAPGSSKFCFLLSTRAGGLGINLATADIVILFDSDWNPQVDLQAMDRAHRIGQTKPVQVFRFISEGTVEEKIIERADKKLFLDAAVIQQGRLAEQNTKLSKSELMQMVKF 481
[Close]
BLAST of mRNA_H-paniculata_contig10985.637.1 vs. uniprot
Match: A0A7S2MKX3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MKX3_9STRA)

HSP 1 Score: 186 bits (473), Expect = 4.750e-54
Identity = 92/105 (87.62%), Postives = 98/105 (93.33%), Query Frame = 1 
Query:    4 MDEFNEPGSSKFLFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 318
            MD FNEPGS  F FLLSTRAGGLGINLATAD+VIL+DSDWNPQVDLQAMDRAHRIGQTKPV+VFRF+TEGTVE+KIVERADRKLFLDAAVIQQGRLAE+N  L K
Sbjct:   40 MDRFNEPGSPYFCFLLSTRAGGLGINLATADIVILFDSDWNPQVDLQAMDRAHRIGQTKPVRVFRFVTEGTVEDKIVERADRKLFLDAAVIQQGRLAEQNNQLSK 144
[Close]
BLAST of mRNA_H-paniculata_contig10985.637.1 vs. uniprot
Match: A0A7S2BNI9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNI9_9STRA)

HSP 1 Score: 187 bits (474), Expect = 1.720e-53
Identity = 92/105 (87.62%), Postives = 98/105 (93.33%), Query Frame = 1 
Query:    4 MDEFNEPGSSKFLFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 318
            MD FNEP S  F FLLSTRAGGLGINLATAD+VIL+DSDWNPQVDLQAMDRAHRIGQTKPVKVFRF+TEGTVEEKI+ERADRKLFLDAAVIQQGRLAE+N +L K
Sbjct:  121 MDRFNEPNSKYFAFLLSTRAGGLGINLATADIVILFDSDWNPQVDLQAMDRAHRIGQTKPVKVFRFVTEGTVEEKIIERADRKLFLDAAVIQQGRLAEQNNNLSK 225
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10985.637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHP7_9PHAE1.570e-60100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0YAG5_AURAN1.450e-5588.68Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A448YY09_9STRA2.140e-5590.57Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7ETM7_9STRA4.880e-5589.62SNF2_N-domain-containing protein n=1 Tax=Fragilari... [more]
B7G2T7_PHATC7.100e-5589.62Imitation switch isoform 1, alias nucleosome remod... [more]
F0YAG6_AURAN2.440e-5488.68Uncharacterized protein RUV1 n=2 Tax=Aureococcus a... [more]
A0A1Z5JHP3_FISSO2.710e-5489.62SWI/SNF-related matrix-associated actin-dependent ... [more]
B8C3Q3_THAPS3.790e-5481.74Atpase-like protein (Fragment) n=1 Tax=Thalassiosi... [more]
A0A7S2MKX3_9STRA4.750e-5487.62Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2BNI9_9STRA1.720e-5387.62Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10985contigH-paniculata_contig10985:6966..7743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.0
Seed ortholog evalue7.8e-47
Seed eggNOG ortholog2850.Phatr28551
Preferred nameSMARCA5
KEGG koko:K11654,ko:K11727
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000166,GO:0000182,GO:0000183,GO:0000228,GO:0000733,GO:0000785,GO:0000790,GO:0000793,GO:0000819,GO:0000981,GO:0001067,GO:0001178,GO:0001410,GO:0001650,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003690,GO:0003697,GO:0003700,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005677,GO:0005694,GO:0005700,GO:0005730,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006363,GO:0006366,GO:0006369,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007338,GO:0007399,GO:0007417,GO:0007420,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008623,GO:0009058,GO:0009059,GO:0009373,GO:0009553,GO:0009561,GO:0009566,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0014070,GO:0015616,GO:0016043,GO:0016070,GO:0016458,GO:0016462,GO:0016584,GO:0016587,GO:0016589,GO:0016590,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017053,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019236,GO:0019237,GO:0019438,GO:0019953,GO:0019954,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030182,GO:0030435,GO:0030436,GO:0030447,GO:0030518,GO:0030522,GO:0030554,GO:0030575,GO:0030874,GO:0031010,GO:0031055,GO:0031213,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032870,GO:0032991,GO:0033043,GO:0033044,GO:0033993,GO:0034080,GO:0034097,GO:0034401,GO:0034508,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0035039,GO:0035041,GO:0035063,GO:0035075,GO:0035076,GO:0035092,GO:0035639,GO:0035690,GO:0036094,GO:0036310,GO:0036314,GO:0036315,GO:0036436,GO:0036437,GO:0040007,GO:0040026,GO:0040028,GO:0040029,GO:0040034,GO:0042127,GO:0042221,GO:0042493,GO:0042623,GO:0042752,GO:0042766,GO:0043044,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043401,GO:0043486,GO:0043565,GO:0043933,GO:0043934,GO:0043936,GO:0043954,GO:0044085,GO:0044087,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0045814,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0045996,GO:0046019,GO:0046020,GO:0046483,GO:0046688,GO:0048229,GO:0048232,GO:0048468,GO:0048506,GO:0048509,GO:0048510,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051704,GO:0051716,GO:0060194,GO:0060195,GO:0060255,GO:0060260,GO:0060303,GO:0060322,GO:0061062,GO:0061063,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070603,GO:0070615,GO:0070827,GO:0070828,GO:0070829,GO:0070868,GO:0070870,GO:0070887,GO:0070925,GO:0071103,GO:0071241,GO:0071248,GO:0071280,GO:0071310,GO:0071345,GO:0071383,GO:0071390,GO:0071396,GO:0071407,GO:0071444,GO:0071495,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090537,GO:0090568,GO:0097159,GO:0097305,GO:0097306,GO:0097367,GO:0097549,GO:0097617,GO:0097659,GO:0098813,GO:0140097,GO:0140110,GO:1900034,GO:1900036,GO:1900049,GO:1900050,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1904949,GO:1905268,GO:1990823,GO:1990830,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000142,GO:2000177,GO:2001141,GO:2001251
EggNOG free text desc.SLIDE
EggNOG OGs2XE4Y@2836,COG0553@1,KOG0385@2759
COG Functional cat.B
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Exons2
Model size345
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10985.637.1prot_H-paniculata_contig10985.637.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10985 6969..7743 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.9687762-UTR-H-paniculata_contig10985:6965..69681622928804.9687762-UTR-H-paniculata_contig10985:6965..6968Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10985 6966..6968 +
1691480626.5691419-UTR-H-paniculata_contig10985:6965..69681691480626.5691419-UTR-H-paniculata_contig10985:6965..6968Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10985 6966..6968 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.9837797-CDS-H-paniculata_contig10985:6968..70971622928804.9837797-CDS-H-paniculata_contig10985:6968..7097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10985 6969..7097 +
1691480626.5827305-CDS-H-paniculata_contig10985:6968..70971691480626.5827305-CDS-H-paniculata_contig10985:6968..7097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10985 6969..7097 +
1622928804.9967062-CDS-H-paniculata_contig10985:7530..77431622928804.9967062-CDS-H-paniculata_contig10985:7530..7743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10985 7531..7743 +
1691480626.5986705-CDS-H-paniculata_contig10985:7530..77431691480626.5986705-CDS-H-paniculata_contig10985:7530..7743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10985 7531..7743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10985.637.1

>prot_H-paniculata_contig10985.637.1 ID=prot_H-paniculata_contig10985.637.1|Name=mRNA_H-paniculata_contig10985.637.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MDEFNEPGSSKFLFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMD
RAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKN
ASLDKVQKKWRIAF
back to top

mRNA from alignment at H-paniculata_contig10985:6966..7743+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10985.637.1 ID=mRNA_H-paniculata_contig10985.637.1|Name=mRNA_H-paniculata_contig10985.637.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=778bp|location=Sequence derived from alignment at H-paniculata_contig10985:6966..7743+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATGGATGAATTCAATGAGCCGGGTTCGTCTAAATTCCTGTTCCTGCT
TTCAACTCGCGCTGGAGGACTGGGCATCAACCTCGCCACAGCAGATGTGG
TCATCCTCTACGACTCCGACTGGAATCCTCAGGTAACCTTTTTTCGCTCT
TTCGGAGGAGGGGGCGGGAGGTAACATGTATGTAGCATCATGTCAACAGT
TTGATCTTTAAAAAGTTCTGTAAGGAAAAAAGAATATAAATGTTTTGTTT
TGTTTTGTTTTGTTTTGTTTTGTTTATCGTATTTCTTGTTTCAAATGTGA
GATTTTGATAGCTGAAAAACAATTATGAATTTTCAAGCGAAAACGAAAGT
CGCTGCGTTTCATCGAAAAAAAAAATGAAGAAAAAAATGACATATTTCTA
CCTGACGACGTAACGGGAGTTTTGCTCAGCTATAATTCTAAATTGAAAAC
GTAGGAAGTGATTAGTAAAAGAATACATATAAATTAATTATGGTTTTGTT
CCAAATCAGTCTTCCTTGTCGTGCGCTCCTCCCCCCGGCCCACCGGCTTG
GACTAATTTGAACAGGTTGACCTACAGGCTATGGACCGCGCCCACCGTAT
CGGGCAAACGAAGCCTGTAAAAGTATTCCGATTTATCACGGAAGGGACCG
TCGAGGAGAAGATCGTTGAGAGGGCTGACCGCAAGCTGTTCCTCGACGCG
GCGGTCATTCAGCAGGGCAGATTGGCCGAGAAAAACGCCTCCCTCGACAA
GGTGCAAAAAAAATGGAGAATTGCTTTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig10985:6966..7743+

>mRNA_H-paniculata_contig10985.637.1 ID=mRNA_H-paniculata_contig10985.637.1|Name=mRNA_H-paniculata_contig10985.637.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig10985:6966..7743+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGAATTCAATGAGCCGGGTTCGTCTAAATTCCTGTTCCTGCTTTC
AACTCGCGCTGGAGGACTGGGCATCAACCTCGCCACAGCAGATGTGGTCA
TCCTCTACGACTCCGACTGGAATCCTCAGATGGATGAATTCAATGAGCCG
GGTTCGTCTAAATTCCTGTTCCTGCTTTCAACTCGCGCTGGAGGACTGGG
CATCAACCTCGCCACAGCAGATGTGGTCATCCTCTACGACTCCGACTGGA
ATCCTCAGGTTGACCTACAGGCTATGGACCGCGCCCACCGTATCGGGCAA
ACGAAGCCTGTAAAAGTATTCCGATTTATCACGGAAGGGACCGTCGAGGA
GAAGATCGTTGAGAGGGCTGACCGCAAGCTGTTCCTCGACGCGGCGGTCA
TTCAGCAGGGCAGATTGGCCGAGAAAAACGCCTCCCTCGACAAGGTGCAA
AAAAAATGGAGAATTGCTTTTGTTGACCTACAGGCTATGGACCGCGCCCA
CCGTATCGGGCAAACGAAGCCTGTAAAAGTATTCCGATTTATCACGGAAG
GGACCGTCGAGGAGAAGATCGTTGAGAGGGCTGACCGCAAGCTGTTCCTC
GACGCGGCGGTCATTCAGCAGGGCAGATTGGCCGAGAAAAACGCCTCCCT
CGACAAGGTGCAAAAAAAATGGAGAATTGCTTTT
back to top