mRNA_H-paniculata_contig10969.627.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig10969.627.1 vs. uniprot
Match: D7G827_ECTSI (40S ribosomal protein S6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G827_ECTSI) HSP 1 Score: 418 bits (1075), Expect = 1.870e-143 Identity = 225/241 (93.36%), Postives = 232/241 (96.27%), Query Frame = 1 Query: 1 QLNIASPATGSQMFVEIDDEKKLRALYDKRISQEVEGEALGDEFAGYTFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVVKKGEQEIPGLTDAPVPRRLGPKRANKVRKLFNLGKDDDVRKYVIARKFEKKGKTVTKRPHIQRLITPIRLQRKRAMRASKKQAQAKAHRDASEYASLYAQRQKEAKEARRSLISKRRSSRKASAKVVA 723 +LNIASP TGSQMF+EIDDEKKLRALYDKRISQEVEGEALGDEFAGY FRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVV KKGEQ+IPGLTDAPVPRRLGPKRAN +RKLFNLGKDDDVRKYVIARKFEKKGKTVTKRPHIQRLITPIRLQRKRA A+KK AQAK+ RDASEYASLYAQRQKE KEARRS+ISKRRSSRKASAKVVA Sbjct: 2 KLNIASPGTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGEQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKDDDVRKYVIARKFEKKGKTVTKRPHIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYASLYAQRQKEQKEARRSMISKRRSSRKASAKVVA 242
BLAST of mRNA_H-paniculata_contig10969.627.1 vs. uniprot
Match: A0A836CDZ2_9STRA (40S ribosomal protein S6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ2_9STRA) HSP 1 Score: 362 bits (929), Expect = 2.680e-121 Identity = 194/239 (81.17%), Postives = 212/239 (88.70%), Query Frame = 1 Query: 1 QLNIASPATGSQMFVEIDDEKKLRALYDKRISQEVEGEALGDEFAGYTFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVVKKGEQEIPGLTDAPVPRRLGPKRANKVRKLFNLGKDDDVRKYVIARKFEKKGKTVTKRPHIQRLITPIRLQRKRAMRASKKQAQAKAHRDASEYASLYAQRQKEAKEARRSLISKRRSSRKASAKV 717 +LNIA P TG+Q F+E DDEKKLRALYDKRISQEVEGEALG+EF+GY FRISGGNDKQGFPMKQGVL +RVRLLL KG+SCYR RR+GERKRKSVRGCIV +DLAVLNLV+VKKGE E+PGLTD VPRRLGPKRANK+RKLFNL K+DDVRKYVIARKFEKKGKTVTKRP IQRLITP +LQR R + KKQAQ K+ DA+EY LYAQR KEAKEARRS+ISKRRSSRKASAKV Sbjct: 2 KLNIAFPTTGAQKFIECDDEKKLRALYDKRISQEVEGEALGEEFSGYVFRISGGNDKQGFPMKQGVLCNHRVRLLLSKGLSCYRPRRKGERKRKSVRGCIVGSDLAVLNLVIVKKGEGEVPGLTDVTVPRRLGPKRANKIRKLFNLSKEDDVRKYVIARKFEKKGKTVTKRPKIQRLITPAKLQRTRRRASLKKQAQVKSKADAAEYGRLYAQRMKEAKEARRSIISKRRSSRKASAKV 240
BLAST of mRNA_H-paniculata_contig10969.627.1 vs. uniprot
Match: A0A7S2RIP4_9STRA (40S ribosomal protein S6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RIP4_9STRA) HSP 1 Score: 315 bits (807), Expect = 7.400e-103 Identity = 172/238 (72.27%), Postives = 198/238 (83.19%), Query Frame = 1 Query: 4 LNIASPATGSQMFVEIDDEKKLRALYDKRISQEVEGEALGDEFAGYTFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVVKKGEQEIPGLTDAPVPRRLGPKRANKVRKLFNLGKDDDVRKYVIARKFEKK-GKTVTKRPHIQRLITPIRLQRKRAMRASKKQAQAKAHRDASEYASLYAQRQKEAKEARRSLISKRRSSRKASAK 714 NI++P TG Q + IDDE+KLRA+YD RI+QE++G ALG+EFAGY FRISGGNDKQGFPMKQGVLS RVRLLLHKG SCYRQR+ GERKRKSVRGCIV +DLAVLNLVV KKG+ EI GLTDA VPRRLGPKRA+K+R+LFNL K+DDVRK V+ R FE K GKTVTK P IQRL+TP+ LQRKRA +A+K A KA +A+EY+ L AQR +E KEARRS ISKRRSSRK+S K Sbjct: 3 FNISNPMTGCQKCITIDDERKLRAVYDLRIAQELDGSALGEEFAGYVFRISGGNDKQGFPMKQGVLSNTRVRLLLHKGASCYRQRKTGERKRKSVRGCIVGSDLAVLNLVVTKKGDAEIEGLTDASVPRRLGPKRASKIRQLFNLDKEDDVRKVVVRRSFENKAGKTVTKSPKIQRLVTPLTLQRKRARKAAKVAAVEKARTEAAEYSKLRAQRAREQKEARRSAISKRRSSRKSSKK 240
BLAST of mRNA_H-paniculata_contig10969.627.1 vs. uniprot
Match: F0YLS6_AURAN (40S ribosomal protein S6 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLS6_AURAN) HSP 1 Score: 312 bits (800), Expect = 9.040e-102 Identity = 175/239 (73.22%), Postives = 197/239 (82.43%), Query Frame = 1 Query: 1 QLNIASPATGSQMFVEIDDEKKLRALYDKRISQEVEGEALGDEFAGYTFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVVKKGEQEIPGLTDAPVPRRLGPKRANKVRKLFNLGKDDDVRKYVIARKFE-KKGKTVTKRPHIQRLITPIRLQRKRAMRASKKQAQAKAHRDASEYASLYAQRQKEAKEARRSLISKRRSSRKASAK 714 +LNIA P+TG+Q F+EIDDEKKLRALYD+RISQEV+GEALG+EFAGY FRI+GGNDKQGFPMKQGVL +RVRLLL G SCYRQRR GERKRKSVRGCIV ADLAVLNLVVVK+G+ +I GLTD PV RLGPKRANK+RKLF L KDDDVRKYVIARKFE KKGK+VTK P IQRLITP+ LQRKR + K A KA +A EY + R +E K+ARRS ISKRRSSRK+ + Sbjct: 2 KLNIACPSTGAQKFLEIDDEKKLRALYDRRISQEVDGEALGEEFAGYVFRITGGNDKQGFPMKQGVLCNHRVRLLLRAGASCYRQRRAGERKRKSVRGCIVGADLAVLNLVVVKQGDADIEGLTDTPVAVRLGPKRANKIRKLFALTKDDDVRKYVIARKFENKKGKSVTKAPKIQRLITPLCLQRKRDRKRVKMAAITKAKAEAVEYNRVKTMRMQEQKDARRSAISKRRSSRKSKTQ 240
BLAST of mRNA_H-paniculata_contig10969.627.1 vs. uniprot
Match: A0A7S0LPA9_9EUKA (40S ribosomal protein S6 n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LPA9_9EUKA) HSP 1 Score: 312 bits (799), Expect = 1.150e-101 Identity = 167/238 (70.17%), Postives = 195/238 (81.93%), Query Frame = 1 Query: 1 QLNIASPATGSQMFVEIDDEKKLRALYDKRISQEVEGEALGDEFAGYTFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVVKKGEQEIPGLTDAPVPRRLGPKRANKVRKLFNLGKDDDVRKYVIARKFEKKGKTVTKRPHIQRLITPIRLQRKRAMRASKKQAQAKAHRDASEYASLYAQRQKEAKEARRSLISKRRSSRKASAK 714 ++NIA PATG+Q F++IDDEKKLR LYDKRISQEV GE LGDEFAGY FRISGGNDKQGFPMKQGVL+ RVRLLL +GVSCYR RR GERKRKSVRGCIV +DLAVLNLV++KKG+ EI G TD +P+RLGPKRA+K+R LFNL K DDVRKYVIAR FEKKGKT+TKRP IQRL+TP+ ++RK+ K+A + +A+ Y +L +R E KEARRS ISKRRSSR+AS K Sbjct: 2 KINIAYPATGNQKFIDIDDEKKLRTLYDKRISQEVNGEDLGDEFAGYIFRISGGNDKQGFPMKQGVLTNTRVRLLLKEGVSCYRARRVGERKRKSVRGCIVGSDLAVLNLVIIKKGDNEIEGFTDVSIPKRLGPKRASKIRNLFNLTKADDVRKYVIARTFEKKGKTITKRPKIQRLVTPVTIRRKKQREVKAKKALENSKAEAAAYTALVHKRIAEQKEARRSEISKRRSSRRASTK 239
BLAST of mRNA_H-paniculata_contig10969.627.1 vs. uniprot
Match: W7TEA2_9STRA (40S ribosomal protein S6 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEA2_9STRA) HSP 1 Score: 308 bits (789), Expect = 3.870e-100 Identity = 168/240 (70.00%), Postives = 196/240 (81.67%), Query Frame = 1 Query: 1 QLNIASPATGSQMFVEIDDEKKLRALYDKRISQEVEGEALGDEFAGYTFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVVKKGEQEIPGLTDAPVPRRLGPKRANKVRKLFNLGKDDDVRKYVIARKFE-KKGKTVTKRPHIQRLITPIRLQRKRAMRASKKQAQAKAHRDASEYASLYAQRQKEAKEARRSLISKRRSSRKASAKV 717 +LNIA+P TG Q VEIDDEK+LRA YD+RISQEV+GE +GDEF GY F+ISGGNDKQGFPMKQGVL+ RVRLLL KG+SCYR RR+GERKRKSVRG IV DL+VLNLV+VK+GE+++ GLTD+ VPRRLGPKRAN +RKLFNL KD DV Y + RKFE KKGKTV K+P IQRLITP+RLQ KR +KK A KA +A+EY ++ QR E KE+RRS ISKRRSSR+ASAKV Sbjct: 2 KLNIANPQTGQQHVVEIDDEKRLRAFYDRRISQEVDGEHIGDEFKGYVFKISGGNDKQGFPMKQGVLTDQRVRLLLRKGLSCYRARRKGERKRKSVRGAIVGPDLSVLNLVLVKRGEEDVVGLTDSAVPRRLGPKRANNIRKLFNLSKDADVTTYPVERKFENKKGKTVVKKPKIQRLITPLRLQHKRRRLEAKKAATTKAKAEAAEYHRIFQQRLNERKESRRSAISKRRSSRRASAKV 241
BLAST of mRNA_H-paniculata_contig10969.627.1 vs. uniprot
Match: A0A7S3ZJK9_9STRA (40S ribosomal protein S6 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJK9_9STRA) HSP 1 Score: 302 bits (773), Expect = 1.040e-97 Identity = 168/242 (69.42%), Postives = 191/242 (78.93%), Query Frame = 1 Query: 1 QLNIASPATGSQMFVEIDDEKKLRALYDKRISQEVEGEALGDEFAGYTFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVVKKGEQEIPGLTDAPVPRRLGPKRANKVRKLFNLGKDDDVRKYVIARKFEKK-GKTVTKRPHIQRLITPIRLQRKRAMRASKKQAQAKAHRDASEYASLYAQRQKEAKEARRSLISKRRSSRKASAKVVA 723 +LNIA P+TG+Q +VE+DDEKKLRALYD RI EVEGEALG+EF GY FRISGGNDKQGFPMKQGVL +RV+LLL G SCYRQRR GERKRKSVRGC+V DLAVLNLVVVK+G+ EI GLTD VP RLGPKRANK+RKLF L K+DDVRKYVI RKF KK GK VTK P IQRLITPI LQRKR M+ K AK +DA EY + Q + A+ +RRS +SKRRSSR++ A+ A Sbjct: 2 KLNIACPSTGAQKWVEVDDEKKLRALYDNRIGAEVEGEALGEEFNGYVFRISGGNDKQGFPMKQGVLCNHRVKLLLRAGASCYRQRRSGERKRKSVRGCVVGPDLAVLNLVVVKQGDAEIEGLTDTQVPVRLGPKRANKIRKLFALSKEDDVRKYVIRRKFTKKNGKEVTKAPKIQRLITPIMLQRKRDMKRKKMAQVAKVKKDAEEYHRVQTQHIQAARASRRSAVSKRRSSRRSKAEATA 243
BLAST of mRNA_H-paniculata_contig10969.627.1 vs. uniprot
Match: A0A6A3NLQ1_9STRA (40S ribosomal protein S6 n=8 Tax=Sar TaxID=2698737 RepID=A0A6A3NLQ1_9STRA) HSP 1 Score: 294 bits (753), Expect = 2.790e-94 Identity = 160/238 (67.23%), Postives = 188/238 (78.99%), Query Frame = 1 Query: 1 QLNIASPATGSQMFVEIDDEKKLRALYDKRISQEVEGEALGDEFAGYTFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVVKKGEQEIPGLTDAPVPRRLGPKRANKVRKLFNLGKDDDVRKYVIARKFEKK-GKTVTKRPHIQRLITPIRLQRKRAMRASKKQAQAKAHRDASEYASLYAQRQKEAKEARRSLISKRRSSRKASA 711 +LNIA+P TG+Q +E+DDE KLRA YDKRISQE+EG+ LGDEF G+ FR+SGGNDKQGFPMKQGVLS R RLLL KG +CYR RR+GERKRKSVRGCIV DL+VLNLVVVK GE ++PGLTD +PRRLGPKRA+ +RKLFNL K+DDVRKYVI RKF+ K GK K P IQRL+TP L KR + K Q + K R+A+EY L+AQR KE K+ R S I+KRRSSRKAS+ Sbjct: 31 KLNIANPLTGAQKVLEVDDEHKLRAFYDKRISQEIEGDVLGDEFKGFVFRVSGGNDKQGFPMKQGVLSNGRARLLLSKGKTCYRPRRKGERKRKSVRGCIVGPDLSVLNLVVVKAGEADVPGLTDVQIPRRLGPKRASNIRKLFNLTKEDDVRKYVIRRKFDSKTGKKNDKAPKIQRLVTPRTLHHKRQIALKKVQQREKVQREAAEYNRLHAQRVKEQKDRRASEIAKRRSSRKASS 268
BLAST of mRNA_H-paniculata_contig10969.627.1 vs. uniprot
Match: M4B486_HYAAE (40S ribosomal protein S6 n=23 Tax=Oomycota TaxID=4762 RepID=M4B486_HYAAE) HSP 1 Score: 290 bits (743), Expect = 3.370e-93 Identity = 158/238 (66.39%), Postives = 186/238 (78.15%), Query Frame = 1 Query: 1 QLNIASPATGSQMFVEIDDEKKLRALYDKRISQEVEGEALGDEFAGYTFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVVKKGEQEIPGLTDAPVPRRLGPKRANKVRKLFNLGKDDDVRKYVIARKFEKK-GKTVTKRPHIQRLITPIRLQRKRAMRASKKQAQAKAHRDASEYASLYAQRQKEAKEARRSLISKRRSSRKASA 711 +LNIA+P TG+Q +E+DDE KLRA YDKRISQE++G LG+EF G+ FR+SGGNDKQGFPMKQGVLS R RLLL KG SCYR RR+GERKRKSVRGCIV DL+VLNLVVVK GE ++PGLTD +PRRLGPKRA+ +RKLFNL K+DDVRKYVI RKFE K GK K P IQRL+TP L KR + K Q + K R+A+EY L+AQR KE K+ R S ++KRRSSRK S+ Sbjct: 2 KLNIANPLTGAQKVLEVDDEHKLRAFYDKRISQEIDGAVLGEEFKGFIFRVSGGNDKQGFPMKQGVLSNGRARLLLSKGKSCYRPRRKGERKRKSVRGCIVGPDLSVLNLVVVKAGEADVPGLTDVQIPRRLGPKRASNIRKLFNLTKEDDVRKYVIRRKFESKTGKKNDKAPKIQRLVTPRTLHHKRQIALKKVQQREKVQREAAEYNRLHAQRVKEQKDRRASEVAKRRSSRKVSS 239
BLAST of mRNA_H-paniculata_contig10969.627.1 vs. uniprot
Match: A0A7S4J6M3_9STRA (40S ribosomal protein S6 n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J6M3_9STRA) HSP 1 Score: 289 bits (740), Expect = 3.200e-92 Identity = 158/237 (66.67%), Postives = 187/237 (78.90%), Query Frame = 1 Query: 1 QLNIASPATGSQMFVEIDDEKKLRALYDKRISQEVEGEALGDEFAGYTFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVVKKGEQEIPGLTDAPVPRRLGPKRANKVRKLFNLGKDDDVRKYVIARKFEKKG-KTVTKRPHIQRLITPIRLQRKRAMRASKKQAQAKAHRDASEYASLYAQRQKEAKEARRSLISKRRSSRKAS 708 Q+NIA+PATG Q +EIDDEK+L++LYD+R++QE++G LGDEF GYT RISGGNDKQGFPM+QGVL+ NRVRLL KG YRQRR GERKRKSVRGCIV D+AVLNLV+ G IPGLTD PVPRRLGPKRANK+RKLFNL K+DDVRKYVIAR+ KG K K P IQRL+TP+ LQRKRA RA+K + + DA+ Y L AQR E +E RRSLISKRRS+R+++ Sbjct: 36 QINIAAPATGQQKVIEIDDEKRLQSLYDRRMAQEIDGGILGDEFDGYTMRISGGNDKQGFPMRQGVLTNNRVRLLCKKGHKAYRQRRTGERKRKSVRGCIVGHDIAVLNLVISAAGANPIPGLTDEPVPRRLGPKRANKIRKLFNLEKEDDVRKYVIAREHTSKGGKNYRKAPKIQRLVTPLTLQRKRACRAAKMNSVLRNKEDAAAYKKLVAQRLAEQREGRRSLISKRRSTRRSA 272 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10969.627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10969.627.1 >prot_H-paniculata_contig10969.627.1 ID=prot_H-paniculata_contig10969.627.1|Name=mRNA_H-paniculata_contig10969.627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=230bp MFVEIDDEKKLRALYDKRISQEVEGEALGDEFAGYTFRISGGNDKQGFPMback to top mRNA from alignment at H-paniculata_contig10969:2245..7216- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10969.627.1 ID=mRNA_H-paniculata_contig10969.627.1|Name=mRNA_H-paniculata_contig10969.627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4972bp|location=Sequence derived from alignment at H-paniculata_contig10969:2245..7216- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10969:2245..7216- >mRNA_H-paniculata_contig10969.627.1 ID=mRNA_H-paniculata_contig10969.627.1|Name=mRNA_H-paniculata_contig10969.627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at H-paniculata_contig10969:2245..7216- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |