mRNA_H-paniculata_contig10948.618.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10948.618.1
Unique NamemRNA_H-paniculata_contig10948.618.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10948.618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10948contigH-paniculata_contig10948:1319..2745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size237
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10948.618.1prot_H-paniculata_contig10948.618.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10948 1438..2745 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928801.519643-UTR-H-paniculata_contig10948:1318..14371622928801.519643-UTR-H-paniculata_contig10948:1318..1437Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10948 1319..1437 -
1691480625.4046984-UTR-H-paniculata_contig10948:1318..14371691480625.4046984-UTR-H-paniculata_contig10948:1318..1437Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10948 1319..1437 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928801.5330498-CDS-H-paniculata_contig10948:1437..16261622928801.5330498-CDS-H-paniculata_contig10948:1437..1626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10948 1438..1626 -
1691480625.415-CDS-H-paniculata_contig10948:1437..16261691480625.415-CDS-H-paniculata_contig10948:1437..1626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10948 1438..1626 -
1622928801.5480618-CDS-H-paniculata_contig10948:2697..27451622928801.5480618-CDS-H-paniculata_contig10948:2697..2745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10948 2698..2745 -
1691480625.4226408-CDS-H-paniculata_contig10948:2697..27451691480625.4226408-CDS-H-paniculata_contig10948:2697..2745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10948 2698..2745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10948.618.1

>prot_H-paniculata_contig10948.618.1 ID=prot_H-paniculata_contig10948.618.1|Name=mRNA_H-paniculata_contig10948.618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
VVHTAVLRAGDKRGTEVNARTERLGVNAECAHRWTKRGTRPSLTRTCDSC
ACDVRYFHYVCNLCYTRVCKGCALHTLA*
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mRNA from alignment at H-paniculata_contig10948:1319..2745-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10948.618.1 ID=mRNA_H-paniculata_contig10948.618.1|Name=mRNA_H-paniculata_contig10948.618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1427bp|location=Sequence derived from alignment at H-paniculata_contig10948:1319..2745- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTGCATACAGCTGTTCTGAGAGCCGGAGACAAACGCGGGACCGAGGT
CAGTAGACGAGTTGGACCTCACCAATCTATGCAGCGACAATGATCCCAAA
GCTTCGCCCACCATCAGCAGATGGGTGGCGTAAGTAAGTCATGCTTCAAT
GCACATGCGTATGCACACCTACGGTAATGTAGGTACAGTACAGTACTACA
GCCCGGTAGCTCTACAAGCACGAAGCACGTGCTGCTTGCCATCCATTGCA
CATGAAGTCCGACGGCGTCATTCATTACACGCACGAACGGGCATATATTC
ACAGACAGTAGTCCCCAGGTAAGCTCAGGCAGGTCATTTATGCCCCGGTA
AGCCCTTTGTGTCGGCGCAATTTCATACCCAAGCTTGACACGGAACAGTT
AGTCCAGCACTTTACTAAGACGCCCTTCATGTTTCTCAGTCCTGAGAGAA
CATGAAGTAGTACGTTCTTCTTCGTTCCGTCATCGAAATTCAGCGATCAG
TATGCCTGACGAGCGTTGTTTTTCGGGCGCTGTCGCCTCTCAGCCGTTAG
AAATCCATTTTTAATCCTTGTCATGTTGGCACGCCGGTGTCACTACTTCG
TCTTTCCTAAACTCGTTGTTCGGCAATGGCGCCTGCCACTCGTGAAATAT
TAGACCTTCGAAAAAGGTGGTTTCGTGTTTTTGGGGACATAAGTTCGTCT
TGTTCAGACAGAAAAATCCCTGAATTTTGACCTCCCCAGACTTCTCTCAG
AAGGGTCAAATCAACTAAATCGACCGGTGTATAATTTTCGCTTGTCATCG
AAATCGACGATTTCACCCCCCATGAGATAAAACGACTCTAAACTGGAAAT
TTTAACGTGGGATATTCGCTCGTCCCTTCAGCTCTTTTTATCCCTTTTTC
CCTGTAAGAATATTCGCATAAAACGTCTTTTAGGTCTCCTTCTCTTTCTC
TTTTCTGTTCTGTTGACGTTTTTCATATACAACTATCCACATGCATCCGA
AGGGGTCTATCTAGTCTCGAGAGAATTATCGGCGGAGTGTACCTCTACTG
CTGTTTGAGTCAAACCTCCCTAACATGATGACCGTCTCCCCGCCCTGCCC
CTCTGCTGTGCATACTCAGGTGAATGCCCGTACAGAACGTCTCGGAGTCA
ACGCCGAATGCGCCCATAGGTGGACAAAGCGAGGCACAAGACCTTCATTG
ACGAGGACTTGTGACTCATGCGCCTGCGACGTACGCTACTTTCACTATGT
GTGCAACCTATGCTACACGAGGGTGTGCAAGGGCTGCGCGCTCCATACGC
TGGCTTGAAACTACTAATAATGGATTTGGATGATGATAATCGATAATTGC
TGAGCTCCCGAAGCCTATCAATGCCTGGAGACACGAAAAGGATTTTATAA
GTATGACTTCTATATAGTAGGTCCCGT
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Coding sequence (CDS) from alignment at H-paniculata_contig10948:1319..2745-

>mRNA_H-paniculata_contig10948.618.1 ID=mRNA_H-paniculata_contig10948.618.1|Name=mRNA_H-paniculata_contig10948.618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig10948:1319..2745- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTGCATACAGCTGTTCTGAGAGCCGGAGACAAACGCGGGACCGAGGT
GGTGCATACAGCTGTTCTGAGAGCCGGAGACAAACGCGGGACCGAGGTGA
ATGCCCGTACAGAACGTCTCGGAGTCAACGCCGAATGCGCCCATAGGTGG
ACAAAGCGAGGCACAAGACCTTCATTGACGAGGACTTGTGACTCATGCGC
CTGCGACGTACGCTACTTTCACTATGTGTGCAACCTATGCTACACGAGGG
TGTGCAAGGGCTGCGCGCTCCATACGCTGGCTTGAGTGAATGCCCGTACA
GAACGTCTCGGAGTCAACGCCGAATGCGCCCATAGGTGGACAAAGCGAGG
CACAAGACCTTCATTGACGAGGACTTGTGACTCATGCGCCTGCGACGTAC
GCTACTTTCACTATGTGTGCAACCTATGCTACACGAGGGTGTGCAAGGGC
TGCGCGCTCCATACGCTGGCTTGA
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