mRNA_H-paniculata_contig10942.612.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10942.612.1
Unique NamemRNA_H-paniculata_contig10942.612.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10942.612.1 vs. uniprot
Match: D7FL55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL55_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 2.060e-73
Identity = 156/278 (56.12%), Postives = 175/278 (62.95%), Query Frame = 2
Query:  956 NYTENEGATATVLLFLLYGPAVASFT*CISFVSESASSAQNMVLFVNFVTDLALMVTFFVLNLVESTKDINAKLKWVYRLFPGVCLGDGLTQLV*CDQGKTCMDISSLEINEVPKELTPLSWNIAGADVLCLMACPLGYMALCLAIEYGKTFPKLRGILSPDPHVPIAPVPTQQSSGSNGYLPMESSTAVDSTDLLVEDEDVAAEAVRVDSMFSSPTIEDENGTEVVLKDLRKVYRTKQGPNVTVRKLSFAVAKGDCFGVSGINGAGKSTTLGILSGD 1789
            +YT NE A+AT LLFLLYGPAVA FT CISF  +SASSAQNMVLF+NFVT LALMVT FVLNLVEST+DINA LKW+YRLFPG CLGDGL QLV C  GKTC+D+ SL  + VPKELTP S  I GAD+ CLMA                                                             + +DEDVAAEA RV+ M      + E G EV+L +LRKVYRTKQGP V V+ LSF+VA+GDCFG  GINGAGKSTTLGILSGD
Sbjct: 1612 SYTTNESASATALLFLLYGPAVAPFTYCISFFFKSASSAQNMVLFINFVTGLALMVTSFVLNLVESTRDINASLKWIYRLFPGFCLGDGLAQLVLCKNGKTCVDVLSLGRDRVPKELTPFSAIITGADIACLMA-----------------------------------------------------------SCVEDDEDVAAEARRVEEM-EGVLRDGEGGGEVILNNLRKVYRTKQGPKVAVQGLSFSVARGDCFGFLGINGAGKSTTLGILSGD 1829          
BLAST of mRNA_H-paniculata_contig10942.612.1 vs. uniprot
Match: A0A7R9U9S9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9S9_9STRA)

HSP 1 Score: 211 bits (538), Expect = 4.740e-55
Identity = 132/283 (46.64%), Postives = 168/283 (59.36%), Query Frame = 2
Query:  947 QRSNYTENEGATATVLLFLLYGPAVASFT*CISFVSESASSAQNMVLFVNFVTDLALMVTFFVLNLVESTKDINAKLKWVYRLFPGVCLGDGLTQLV*CDQGKTCMDISSLEINEVPKELTPLSWNIAGADVLCLMACPLGYMALCLAIEYGKTFPKLRGIL--SPDPHVPIAPVPTQQSSGSNGYLPMESSTAVDSTDLLVEDEDVAAEAVRVDSMFSSPTIEDENGTEVVLKDLRKVYRTKQGPNVTVRKLSFAVAKGDCFGVSGINGAGKSTTLGILSGD 1789
            Q  NYT+N GA AT ++FLLYGPA A+FT  +S+  +S SSAQN+VLF NF+T L LM+T FVLNL+EST+ IN  LK+V+R+FP  CLGDGL QL  CD+GK C  ++  E  E+ K   P   ++ G +V+ LM   + Y+A+ L IEY   FP +      + DP  P                             L EDEDVAAEA RV    +       +G  V L+ LRKV+ T  GP V VRKLSF + +G+CFG  GINGAGKSTTL ILSG+
Sbjct:  401 QIDNYTKNTGAAATAVIFLLYGPASAAFTYMLSYAFKSHSSAQNVVLFFNFITGLCLMITSFVLNLLESTQAINYYLKYVFRIFPIFCLGDGLAQLAVCDEGKDCYVVTK-EGYELGKMAGPFHLDVVGTNVVYLMVEIVVYLAITLGIEYSLQFPMILRFWQRTRDPQDPRG---------------------------LYEDEDVAAEANRVLDGGA-------DGDVVCLRQLRKVFPTPVGPKVAVRKLSFGIPRGECFGFLGINGAGKSTTLSILSGE 648          
BLAST of mRNA_H-paniculata_contig10942.612.1 vs. uniprot
Match: A0A7S1UE30_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UE30_9STRA)

HSP 1 Score: 182 bits (462), Expect = 5.900e-45
Identity = 113/279 (40.50%), Postives = 156/279 (55.91%), Query Frame = 2
Query:  956 NYTENEGATATVLLFLLYGPAVASFT*CISFVSESASSAQNMVLFVNFVTDLALMVTFFVLNLVESTKDINAKLKWVYRLFPGVCLGDGLTQLV*C-DQGKTCMDISSLEINEVPKELTPLSWNIAGADVLCLMACPLGYMALCLAIEYGKTFPKLRGILSPDPHVPIAPVPTQQSSGSNGYLPMESSTAVDSTDLLVEDEDVAAEAVRVDSMFSSPTIEDENGTEVVLKDLRKVYRTKQGPNVTVRKLSFAVAKGDCFGVSGINGAGKSTTLGILSGD 1789
            N+ + +GA A   + LLYGPA A+FT  +S+   S S+AQN VLF NF+T L LM+T FVLN++E+T+++N  L+++YRLFPG CLGD L Q+  C D G  C+ ++      V  +  P   ++AGA ++ L+   + YMA+ L IEY   FP +           I      +  G                   VED DVAAEA RV    +   +       V L+ LRKV+ T  GP V V+ +SF + +G+CFG  GINGAGKSTTL ILSG+
Sbjct:  785 NFIQGQGALACAAVLLLYGPATAAFTYILSYGFSSHSTAQNFVLFFNFITGLCLMITSFVLNIIENTQEVNYSLRFLYRLFPGFCLGDALAQIAVCQDPGANCLRVT--RNGYVMSDAGPFDLDVAGASMIYLIVEVIVYMAITLGIEYSLQFPSV-----------IKYFQRVRDPGDASE---------------VEDTDVAAEAERVAGGGADDDV-------VRLERLRKVFPTPVGPKVAVKHMSFGIPRGECFGFLGINGAGKSTTLAILSGE 1028          
BLAST of mRNA_H-paniculata_contig10942.612.1 vs. uniprot
Match: A0A4D9D786_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D786_9STRA)

HSP 1 Score: 164 bits (416), Expect = 5.500e-39
Identity = 109/290 (37.59%), Postives = 161/290 (55.52%), Query Frame = 2
Query:  956 NYTENEGATATVLLFLLYGPAVASFT*CISFVSESASSAQNMVLFVNFVTDLALMVTFFVLNLVESTKDINAKLKWVYRLFPGVCLGDGLTQLV*CDQGKTCMDISSLEINEVPKELTPLSWNIAGADVLCLMACPLGYMALCLAIEYGKTFPKLRGILSPDPHVPIAPVPTQ------------QSSGSNGYLPMESSTAVDSTDLLVEDEDVAAEAVRVDSMFSSPTIEDENGTEVVLKDLRKVYRTKQGPNVTVRKLSFAVAKGDCFGVSGINGAGKSTTLGILSGD 1789
            +YT  +   A VLLF+ + PA  +FT   +F   S S+AQ +VLF+NF+T L L +  FVL+L++ST+ IN KL++V+RLFP  C GDGL QL  C     C  I++  I+ + + LTPL W++  A+++ ++   L Y  + L IE+ +  P +  + +  P   +    T+            +     G   +E     D      +DEDV AEA RV     S  + D     + L+ LRKV++T +GP V VR LSF + KG+ FG  GINGAGK+TTL +LSG+
Sbjct: 1325 SYTTGQAGGAFVLLFIAFAPAATAFTYVWTFCFSSHSAAQTVVLFINFLTGLVLSIVSFVLSLIDSTRAINLKLRYVFRLFPPFCFGDGLLQLALCVDD-VCPKITAAGIS-ITEPLTPLHWDVTLANIIFMLVEALLYFLITLIIEHARAQPWIAALAAWRPKSWVLGRKTKLGPTRGHTRKSTEKGAQGGATDVEGGEEDD-----YDDEDVKAEAERV-LCGESRRVND----VIRLEALRKVFQTARGPKVAVRGLSFGIPKGETFGFLGINGAGKTTTLSMLSGE 1602          
BLAST of mRNA_H-paniculata_contig10942.612.1 vs. uniprot
Match: A0A7S2IKK8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2IKK8_9DINO)

HSP 1 Score: 160 bits (404), Expect = 1.170e-37
Identity = 102/270 (37.78%), Postives = 145/270 (53.70%), Query Frame = 2
Query:  983 ATVLLFLLYGPAVASFT*CISFVSESASSAQNMVLFVNFVTDLALMVTFFVLNLVESTKDINAKLKWVYRLFPGVCLGDGLTQLV*CDQGKTCMDISSLEINEVPKELTPLSWNIAGADVLCLMACPLGYMALCLAIEYGKTFPKLRGILSPDPHVPIAPVPTQQSSGSNGYLPMESSTAVDSTDLLVEDEDVAAEAVRVDSMFSSPTIEDENGTEVV-LKDLRKVYRTKQG-PNVTVRKLSFAVAKGDCFGVSGINGAGKSTTLGILSG 1786
            A ++LF+ YG ++A FT  +SF     +SAQ + L +NFVT L L++  ++LN++ESTKD+N KL+WVYRLFPG CLG GL Q+  C    T    + L ++  P  L   +W  AG D   L      Y  + + I+Y +  P        DP     P     + G+                   +DEDVA+EA RV +    P       ++VV +   RKVYRT +G P V V  LSF +A+G+CFG  GINGAGK++T+ +L+G
Sbjct:  366 AVIVLFIGYGVSIAPFTYAMSFAFSKHTSAQILCLVINFVTGLLLLIVSYILNVIESTKDVNEKLEWVYRLFPGFCLGHGLLQI--CTASNTAAQAAELHLHVSPNFL---AWKCAGEDAFALFLLAPIYFVVVVVIDYLRHSPLAAAARHLDPQAAGNP----NAGGA-------------------DDEDVASEAARVRAQPGGPA------SDVVRIAGFRKVYRTPEGLPKVAVHDLSFGLARGECFGFLGINGAGKTSTMNMLTG 601          
BLAST of mRNA_H-paniculata_contig10942.612.1 vs. uniprot
Match: A0A835ZC34_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC34_9STRA)

HSP 1 Score: 156 bits (394), Expect = 3.940e-36
Identity = 118/296 (39.86%), Postives = 150/296 (50.68%), Query Frame = 2
Query: 1004 LYGPAVASFT*CISFVSESASSAQNMVLFVNFVTDLALMVTFFVLNLVESTKDINAKLKWVY-------------RLFPGVCLGDGLTQLV*CDQGKTCMDIS-----SLEINEVPKELTPLSWNIAGADVLCLMACPLGYMALCLAIEYGKTFPKLRGILSPDPHVPIAPVPTQQSSGSNGYLPMESSTAVDSTDLLVEDEDVAAEAVRVDSM--FSSPTIEDENGTE---VVLKDLRKVYRTKQGPNV-------------TVRKLSFAVAKGDCFGVSGINGAGKSTTLGILS 1783
            LYGPAVA FT C+SF  +S SSAQN+VL +NF+T LALMVT FVL+L++ST+  N +L+W Y             RLFPG CLGDGL QLV C  G TC  +      SLE         P + ++AGAD+  L A  + Y A+ LAIE   ++P+L   L PD                                    D DVAAEA RV  +  + +   +D  G +   V +  LRKVY   QG  V              VR+LS  V +G+CFG+ GINGAGK+T L  LS
Sbjct: 1623 LYGPAVAPFTYCLSFAFDSHSSAQNVVLLLNFLTGLALMVTSFVLSLLDSTRATNLRLRWFYSMXXXXXXXXXXXRLFPGFCLGDGLAQLVLCTDGHTCPKLDPDTGFSLETQG------PFAPDVAGADIAFLAAECVVYFAITLAIEAALSYPRLASWLQPD------------------------------------DPDVAAEAQRVLHLPPYDNDNDDDGGGKDEDVVRIVGLRKVYL--QGVGVPTACGGGGARGKQAVRELSLGVRRGECFGLLGINGAGKTTALATLS 1874          
BLAST of mRNA_H-paniculata_contig10942.612.1 vs. uniprot
Match: A0A7S1R4D9_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1R4D9_ALECA)

HSP 1 Score: 155 bits (391), Expect = 4.270e-36
Identity = 99/277 (35.74%), Postives = 148/277 (53.43%), Query Frame = 2
Query:  959 YTENEGATATVLLFLLYGPAVASFT*CISFVSESASSAQNMVLFVNFVTDLALMVTFFVLNLVESTKDINAKLKWVYRLFPGVCLGDGLTQLV*CDQGKTCMDISSLEINEVPKELTPLSWNIAGADVLCLMACPLGYMALCLAIEYGKTFPKLRGILSPDPHVPIAPVPTQQSSGSNGYLPMESSTAVDSTDLLVEDEDVAAEAVRVDSMFSSPTIEDENGTEVVLKDLRKVYRTKQG-PNVTVRKLSFAVAKGDCFGVSGINGAGKSTTLGILSG 1786
            +  N    A+ ++F+ YG A+A F+  +SF+    ++AQ + L +NFVT L LM+T ++L+ +E TK++N  L W+YR+FPG CLG GL Q+        C +  +     +  ++  LSW++AG D   L      Y AL + ++Y               H P+A   T+    ++G   +E             D DVAAEA RV S  +       +G  + L  LRKVYRT +G P V VR LSF + +G+CFG  GINGAGK++TL +L+G
Sbjct:  234 FVRNGALWASFVVFMGYGLAIAPFSYLLSFLFSKHTTAQILCLVINFVTGLILMITSYILSAIEDTKEVNRSLMWLYRIFPGFCLGHGLFQI--------CTNSVAATTFGIEDKIDLLSWDVAGKDAAFLYLAAPTYFALAVLVDYLL-------------HSPLAAASTRFDPHADGAAGLEDEDG---------DADVAAEAARVASGAA-------DGDVIRLDRLRKVYRTPEGRPKVAVRGLSFGLPRGECFGFLGINGAGKTSTLNMLTG 473          
BLAST of mRNA_H-paniculata_contig10942.612.1 vs. uniprot
Match: A0A6H5J6A2_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6A2_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 3.290e-35
Identity = 103/219 (47.03%), Postives = 129/219 (58.90%), Query Frame = 1
Query:   73 SRTFFNQPSLELSPGNNYSTGMPVAPRNPVPLTAPQEP-SLSRSVGDRLDGVSVPGMGVFTA---GVVVDDMFAGCAQGDSPLVNMNDFLLKPPSAEEQGASR*GAIVLDKSLHLPSEVVANDSAL---------------------LAFGVLVNASAVHAAPIFMNLVNSAALQAIT-DAVGSRGHNKEAADDE----GQRNAALAMGDGDGSGELPS 639
            SR+ F+QPSL LSP  N++ G P   RNPVP+ AP++P SL+R V DR DG+SV G  +      G  ++D F GCAQG SPLV M+DFLL+   A+EQGASR GAIVLD S  LP+        L                     LA+GVL+NASAVHAAPIF+NLVNSAALQA+  D+  ++G    A  +E    G+   A A    D +  LPS
Sbjct: 1313 SRSMFDQPSLLLSPATNFNPGKPSRVRNPVPMDAPEDPESLARKVADRFDGISVEGTSILLPPGEGPSIEDQFGGCAQGASPLVYMSDFLLQGAGADEQGASRYGAIVLDNSSCLPTMTPRQRLGLKEDRYLHGLFQNHSTNHSDGSLAYGVLINASAVHAAPIFVNLVNSAALQAVVADSGDTKGREGVAVGEERSDAGEEKTAAAAAAADTA--LPS 1529          
BLAST of mRNA_H-paniculata_contig10942.612.1 vs. uniprot
Match: A0A813JRP4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JRP4_POLGL)

HSP 1 Score: 147 bits (371), Expect = 9.030e-35
Identity = 108/272 (39.71%), Postives = 148/272 (54.41%), Query Frame = 2
Query:  983 ATVLLFLLYGPAVASFT*CISFVSESASSAQNMVLFVNFVTDLALMVTFFVLNLVESTKDINAKLKWVYRLFPGVCLGDGLTQLV*CDQGKTCMDISSLEINEVPKELTPLSWNIAGADVLCLMACPLGYMALCLAIEYGKTFPKLRGILSP--DPHVPIAPVPTQ-QSSGSNGYLPMESSTAVDSTDLLVEDEDVAAEAVRVDSMFSSPTIEDENGTEVVLKDLRKVYRTKQG-PNVTVRKLSFAVAKGDCFGVSGINGAGKSTTLGILSG 1786
            A+ + FL YG A+A F+  +SF+ E  S+AQ + L +NFVT L LM+  ++LN + STKD+N  L W+YRLFPG CLG GL ++  C        +      +VP +L  L W++AG DVL L      Y  L + ++Y    P L    S   DP V  A  P+  +  GS+   P E           V D DV  E+ RV S  +   +       + L+ LRKVYRT +G P V V  LSF + KG+CFG  GINGAGK++TL +L+G
Sbjct:   20 ASFVTFLGYGLAIAPFSYLLSFLFEKHSTAQVLSLVINFVTGLLLMLVSYILNEISSTKDVNESLMWIYRLFPGFCLGHGLLEI--CTNSLAASQLGL----DVPLDL--LGWDVAGKDVLYLFISAPCYFFLAVLVDYLAHSP-LHAAASRHFDPQVEAAGRPSLGEELGSD---PDE-----------VGDGDVVVESARVLSGAADSDV-------IRLEGLRKVYRTPEGIPKVAVHGLSFGLQKGECFGFLGINGAGKTSTLNMLTG 261          
BLAST of mRNA_H-paniculata_contig10942.612.1 vs. uniprot
Match: A0A813FDZ4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FDZ4_POLGL)

HSP 1 Score: 147 bits (371), Expect = 3.030e-33
Identity = 108/272 (39.71%), Postives = 148/272 (54.41%), Query Frame = 2
Query:  983 ATVLLFLLYGPAVASFT*CISFVSESASSAQNMVLFVNFVTDLALMVTFFVLNLVESTKDINAKLKWVYRLFPGVCLGDGLTQLV*CDQGKTCMDISSLEINEVPKELTPLSWNIAGADVLCLMACPLGYMALCLAIEYGKTFPKLRGILSP--DPHVPIAPVPTQ-QSSGSNGYLPMESSTAVDSTDLLVEDEDVAAEAVRVDSMFSSPTIEDENGTEVVLKDLRKVYRTKQG-PNVTVRKLSFAVAKGDCFGVSGINGAGKSTTLGILSG 1786
            A+ + FL YG A+A F+  +SF+ E  S+AQ + L +NFVT L LM+  ++LN + STKD+N  L W+YRLFPG CLG GL ++  C        +      +VP +L  L W++AG DVL L      Y  L + ++Y    P L    S   DP V  A  P+  +  GS+   P E           V D DV  E+ RV S  +   +       + L+ LRKVYRT +G P V V  LSF + KG+CFG  GINGAGK++TL +L+G
Sbjct: 1266 ASFVTFLGYGLAIAPFSYLLSFLFEKHSTAQVLSLVINFVTGLLLMLVSYILNEISSTKDVNESLMWIYRLFPGFCLGHGLLEI--CTNSLAASQLGL----DVPLDL--LGWDVAGKDVLYLFISAPCYFFLAVLVDYLAHSP-LHAAASRHFDPQVEAAGRPSLGEELGSD---PDE-----------VGDGDVVVESARVLSGAADSDV-------IRLEGLRKVYRTPEGIPKVAVHGLSFGLQKGECFGFLGINGAGKTSTLNMLTG 1507          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10942.612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL55_ECTSI2.060e-7356.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9U9S9_9STRA4.740e-5546.64Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1UE30_9STRA5.900e-4540.50Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9D786_9STRA5.500e-3937.59Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2IKK8_9DINO1.170e-3737.78Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A835ZC34_9STRA3.940e-3639.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1R4D9_ALECA4.270e-3635.74Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A6H5J6A2_9PHAE3.290e-3547.03ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A813JRP4_POLGL9.030e-3539.71Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813FDZ4_POLGL3.030e-3339.71Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10942contigH-paniculata_contig10942:2403..8342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue3.5e-22
Seed eggNOG ortholog2880.D7FL55
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031090,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0098588,GO:0098805,GO:0099120
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0059@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons11
Model size1791
Cds size528
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10942.612.1prot_H-paniculata_contig10942.612.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10942 6774..8342 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928800.5892954-UTR-H-paniculata_contig10942:2402..27701622928800.5892954-UTR-H-paniculata_contig10942:2402..2770Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10942 2403..2770 +
1691480624.986374-UTR-H-paniculata_contig10942:2402..27701691480624.986374-UTR-H-paniculata_contig10942:2402..2770Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10942 2403..2770 +
1622928800.6050258-UTR-H-paniculata_contig10942:3282..35521622928800.6050258-UTR-H-paniculata_contig10942:3282..3552Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10942 3283..3552 +
1691480624.9973621-UTR-H-paniculata_contig10942:3282..35521691480624.9973621-UTR-H-paniculata_contig10942:3282..3552Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10942 3283..3552 +
1622928800.6215224-UTR-H-paniculata_contig10942:3903..39901622928800.6215224-UTR-H-paniculata_contig10942:3903..3990Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10942 3904..3990 +
1691480625.011685-UTR-H-paniculata_contig10942:3903..39901691480625.011685-UTR-H-paniculata_contig10942:3903..3990Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10942 3904..3990 +
1622928800.6353512-UTR-H-paniculata_contig10942:4319..44331622928800.6353512-UTR-H-paniculata_contig10942:4319..4433Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10942 4320..4433 +
1691480625.0227504-UTR-H-paniculata_contig10942:4319..44331691480625.0227504-UTR-H-paniculata_contig10942:4319..4433Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10942 4320..4433 +
1622928800.6529584-UTR-H-paniculata_contig10942:4745..48631622928800.6529584-UTR-H-paniculata_contig10942:4745..4863Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10942 4746..4863 +
1691480625.0321183-UTR-H-paniculata_contig10942:4745..48631691480625.0321183-UTR-H-paniculata_contig10942:4745..4863Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10942 4746..4863 +
1622928800.6702895-UTR-H-paniculata_contig10942:5243..53301622928800.6702895-UTR-H-paniculata_contig10942:5243..5330Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10942 5244..5330 +
1691480625.0419304-UTR-H-paniculata_contig10942:5243..53301691480625.0419304-UTR-H-paniculata_contig10942:5243..5330Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10942 5244..5330 +
1622928800.682166-UTR-H-paniculata_contig10942:5525..56841622928800.682166-UTR-H-paniculata_contig10942:5525..5684Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10942 5526..5684 +
1691480625.055368-UTR-H-paniculata_contig10942:5525..56841691480625.055368-UTR-H-paniculata_contig10942:5525..5684Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10942 5526..5684 +
1622928800.6983554-UTR-H-paniculata_contig10942:6715..67731622928800.6983554-UTR-H-paniculata_contig10942:6715..6773Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10942 6716..6773 +
1691480625.0676944-UTR-H-paniculata_contig10942:6715..67731691480625.0676944-UTR-H-paniculata_contig10942:6715..6773Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10942 6716..6773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928800.7174451-CDS-H-paniculata_contig10942:6773..68791622928800.7174451-CDS-H-paniculata_contig10942:6773..6879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10942 6774..6879 +
1691480625.0771058-CDS-H-paniculata_contig10942:6773..68791691480625.0771058-CDS-H-paniculata_contig10942:6773..6879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10942 6774..6879 +
1622928800.7323973-CDS-H-paniculata_contig10942:7344..76491622928800.7323973-CDS-H-paniculata_contig10942:7344..7649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10942 7345..7649 +
1691480625.0864294-CDS-H-paniculata_contig10942:7344..76491691480625.0864294-CDS-H-paniculata_contig10942:7344..7649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10942 7345..7649 +
1622928800.7499888-CDS-H-paniculata_contig10942:7966..80481622928800.7499888-CDS-H-paniculata_contig10942:7966..8048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10942 7967..8048 +
1691480625.095353-CDS-H-paniculata_contig10942:7966..80481691480625.095353-CDS-H-paniculata_contig10942:7966..8048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10942 7967..8048 +
1622928800.777327-CDS-H-paniculata_contig10942:8307..83421622928800.777327-CDS-H-paniculata_contig10942:8307..8342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10942 8308..8342 +
1691480625.1043866-CDS-H-paniculata_contig10942:8307..83421691480625.1043866-CDS-H-paniculata_contig10942:8307..8342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10942 8308..8342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10942.612.1

>prot_H-paniculata_contig10942.612.1 ID=prot_H-paniculata_contig10942.612.1|Name=mRNA_H-paniculata_contig10942.612.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp
MDISSLEINEVPKELTPLSWNIAGADVLCLMACPLGYMALCLAIEYGKTF
PKLRGILSPDPHVPIAPVPTQQSSGSNGYLPMESSTAVDSTDLLVEDEDV
AAEAVRVDSMFSSPTIEDENGTEVVLKDLRKVYRTKQGPNVTVRKLSFAV
AKGDCFGVSGINGAGKSTTLGILSGD
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mRNA from alignment at H-paniculata_contig10942:2403..8342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10942.612.1 ID=mRNA_H-paniculata_contig10942.612.1|Name=mRNA_H-paniculata_contig10942.612.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5940bp|location=Sequence derived from alignment at H-paniculata_contig10942:2403..8342+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAAATCCTACCTCTTTCTTCTCCCATACCCTTGATGTTTGTAAACATCTC GCTCCCCGATTCCCCTGCATACAGTCGAACATTCTTCAATCAGCCTTCAC TCGAGCTTTCTCCGGGGAATAATTACAGCACTGGCATGCCAGTAGCCCCG AGAAACCCTGTGCCGCTGACAGCTCCCCAAGAACCCTCGCTCTCGCGTTC GGTGGGTGATCGCTTGGACGGAGTGTCCGTTCCGGGGATGGGAGTTTTTA CCGCCGGGGTTGTAGTCGATGATATGTTTGCCGGGTGTGCCCAGGGAGAC AGCCCTTTGGTGAACATGAATGACTTTCTCCTGAAGCCTCCGAGTGCGGA GGAGCAAGGCGCCAGTCGGCAAGTAACGTTCCCGGTGGCGTTGCATTGAA GATTGCGATTTTATGCGTTTATATCTGGCGTACGTTTAAGTCTGTTTTGT CAGCTGACGAGTGGGCCGTTGACGAGAAGACCTTGATCTACAAAGAGATA CATTTATAGGGTGTCTATATACTTCTTCTCTGTATATACGTGCAGCATTT TATCCTACAGTATCTCGAGTGTATTAATCGTCTGCGAAGGATAACTGAAT AACTGCATGCTCGTAGTCATGGAGCTTAAATACTGATTTGCCGAGACAAC GTGGTCAGGGTTTGCGTCTTGACCTCTATATACTGTAGGCATGAGGCTGC CTTCTCGAACGGAATGTACTGTTGTACAATCTTTTCCCGGCACCTCACCG TACTCCACCCCACCTTACCATTTGCCGACCTTTCTTTTTGACAAGAATAT ATCTAATGTCCCCCCCTCCTTCCCCCCACCCCCTCCTCCAATCACACCTC ATTGCTGATCGTGTACATAACAACATTCAGATAAGGCGCGATTGTCCTTG ATAAGTCATTGCATCTCCCATCCGAAGTTGTTGCCAACGACTCCGCGTTG CTAGCATTTGGTGTTCTTGTTAACGCCTCGGCTGTACACGCAGCCCCTAT CTTCATGAACCTCGTCAATTCTGCGGCCCTTCAAGCTATTACCGATGCTG TAGGCAGTCGTGGTCATAACAAGGAGGCTGCGGATGACGAGGGTCAAAGG AACGCGGCATTGGCTATGGGGGATGGCGATGGAAGCGGTGAATTACCCAG GTAGGCCAAAGACGCTGTACTGCTTTCGCTTTGGTGTGGTAGTTTTATCG TGTATTTTTCTTTTGTAAACCTTTTTTAGATAGCTAAGTTTGCTTGAACG CAGAGAATCAACATATATTTTCCAGTGCTTGTGGATCGACTCACCTTCAG GTATTGACTACCCGCGTTGGCATGATTTCGCCTCGTTCAGTGACTGTTCG AGTAGGCCTGTGTTCCTGGGGTGGTGTTGGCTGCGTATTTTACATTATGC TGCTTGTACCTTCGTTTATGTAGCTCCGTAAACTCCCCGACAAAGCCTAA TCTGATTGAGATTCATTGTTCATGTGCGCGTGTCCCGTGGCATCTTACTA GTTGTTGATTGATTTGTACACGTTTTTCAGCATCACGACCAGGAGCCGCC TGCTTCCGAGGACGAGGTCAGAGGAGCTTGCACGACAGGTTGGTGCATTT CCAACAGTTGGATGGAGCTTCTGAGCAAGTCCAGTCAAGAAATATACCTA CTTCCACAGTTTCAACGTTTGGGAGTCTCACACGCTAGGACCGCAGCTGT CGATGTGCGACCGTTGTGCTGATCCTTGTCGCGGATGCTTCATTGGTCGC ATGGAGGCGATTTCGCTTGCTTTCGTTCGAAGAGTTTGAGCGACGACTAC TAGCAAGTGAACGTTTTACTACGAGACAGTTCCGGAAGCGAACAGCGTGT ATGTTATATGCTTCTTGCTATTGCTGTTGCTGCTGCGGTTGCTGTAATAA TATCGTACAATCGGCAGGGCATCGAGGCTTTCACCACGGCCATCATGGTG GTCATCTCCGTCTGCTTCTTGCCGGCTTCGTACGCCATCTTTGTGGTGAA GGAGAGGGCTGTCAAGGCCAAACACTAACAGGCGAGTAGACTCAGTGGAT GGAAGTGTTATGTAGCATGTTCTCCATTTGTCCGTATGTCATTTCTGTAC GCCGAACAGGTATTTGGAGCTGCTATCCTGTTGACTGCCGAAGCTAAGCT AAACGAGCCTCAAGAGCCAGATTAGGATACGAGTGTGGATCATGACTTTG TGCGCAGTCAAACTAACGACCACATGCTGCATGCAGCTAATCATGCAAAT GTTGCGCACACGTAGCACCTTTCATTCCACTTTTTGATCTTGAGGAACTG CTACCCCTTGTTTCACAATTAATTCCTTGCATTTACTTTACAGATGATAC CTGGCGTGGGCGTGGTGGCGTACTCGGTCAGCACCTTTGTGTTCGATGTG TTGACTTACTTGATCCCGTGCGCGGTGTTCCTGGGTCTGATATACGCCTT CAGCGTTCCAAGTAGGTTTTGAGCTGCTCAAAAGTTGATACTCGATGCAG TGGCGAGCGTACATGCAAAATGGGGGAGCTTGGGTGTACTTTGGTAGCTG CGCCCTTAATGCGTTTACCCACCTGTGTGTGGCCTCCTCATTCTTGAGTT GTTGGCTGGGGCATTGGTTAAATGCCCAGGCTGTTCCGCGGATGTTGCAC GATTGCATGATTGGTTTCTCCTCATGTTTTCGTCCATCGCAATAGAAAAT GACAGAAATGATTGCTTACATTCGTCGAATCCGTCAGCGACACATCGTGA GTATTAGCGACCTGTCCTAGGCAACGACGCGCCCACTCCTCCAAGCAACC AGGCGATTACTCTGAACTCCCACCGTGGTTGTTTCGTCAAGCTACACGGA AAACGAAGGCGCGACAGCCACGGTCCTGTTGTTCTTGCTGTATGGCCCAG CGGTGGCATCCTTTACCTAGTGCATTAGGTACAAAACGTTGCAAGATAGT GCTTACGTACTGCGACTGCGCGGGTAGAAGGTTGTACGGGGCGCGCATCT CACGCTCCGAAATCTGTGGCCAACCGTCAACGTGATCCTACTGTTGATCA TGATGAATCGATTAGGCGTTGGGTGTGCTCTGATTTCCAACAAATCGCCC TCGCGCTTCTCTTCTCTGCACAGCTTCGTATCCGAGTCTGCCTCCTCTGC TCAGAATATGGTGCTGTTCGTCAATTTCGTGACTGACCTTGCTTTGATGG TGACGTTCTTCGTGCTCAACCTGGTAGAATCTACGAAGGATATCAACGCG AAATTGAAATGGGTGTACAGGCTGTTCCCAGGGTGAGCAGTCTCAGAGGA CGTCGTTCATTGACCGACAGGGGGTGAGGTGTAAACATTCCAAAAAATTC CGTAAGGGGAGAAGAATATTATATTATCCAATATTGTAATACGCCTTTAC CCAATATTATGAGACAACAGTTCGATACGGCCAATGACGGTGGACCCTAA CAAAGTAAATCAAGTAACAAAATGGATCAATATCGACAATAAAAAGTTAG CCCCGTTCTTTTTGTGGATTTCAAAGTGTTGTGCGGCAAAACTTTACGGT TGGAGATGTTACGCCGACGCAGAGTAGAGTAGAGTAGAGTAATACCCGGG TATCGGCGTGAAGGTGAACCTTTCAATTCTCCGACGATGCAGGTCTTACG GTCACGAGCAAACATTACGTCTATAGCAAATATATCACTTGGAGCATTCA AAACCGTGTTTTTTCGCCGAAATCATTCGTGTAAATCACGGGCTAGTCCC GATGGTCAATTCGCGCTATCGTTTGTCGTCTAAACAACCTCAGTACCAGG CGAAGAACGATACAGGTTCTACATATAACAGTATATTGGTGAAATGGGGA CCCAACTTTGAGATGGGGACCCTGGGTTAGGGTTAGGGTTACTACTGCAC ACCAGCATCCTCGCGATGCGTGCTTTAGAACACGCCTTATTTTATGGCCA TCGCGACCCCCCTTGATCTTTTAGGTCCTTTGACGAGTCAGAGGGTGTAA TTTGTGTTTTTGAAACTGTTTAGTCTCTTTTTCTTGGGAAAGGAAAGTCT AATGCCAAGAAACTAGCTATTTGTGCTAGGACGCGCAGCATGTCAAATGC ACGAAATAGTGAAATATTTCAAGTTACCGGTCTCTACGCTGCACTTGGTA AGTTGTACAGGCTATCGCTCGTGTTTGAGCGGATATGTACCCGCTGACGA TAAGTCCGGCGGGCTCAGGTAGAGTGTTGTTTATGGTTCTGCGGCTACTT CGTTGTCCCGGAGGCAATTGTTTTGTCATGACTGTTCCCATTTTTTTCGC CCGCTATTGCCAGTGTCTGTTTGGGAGATGGACTCACTCAGTTGGTATAA TGCGACCAGGGAAAAACGTGCATGGACATCTCTAGCCTGGAAATCAACGA GGTACCTAAAGAGCTTACGCCACTCTCGTGGAACATTGCCGGCGCTGACG TTTTGTGTCTCATGGCGTGCCCCCTAGGTGAGAAAGTAGTTTCTTCGATT CTGTCGGGTCACGTTTGCACATGCGCGTTTCGTAAGTGGGCAACTGGAGA AAGGGTCACAATTCTTGCCTTATGCATCTGCTCCAAACGAATTTGTCATG TTCCGTCGTTGAAACGAGTAAGCATATAGCACATAGTACATAGTACATCC TGTGTCAAGCACGGCAGAATTTGAGGAAGCTCGCTTTTTGTGTTTCACGG AATTCGGGCGACACTTTGAGGCACTAGATGATGATACGATATAAGCAGGG TGAGAAGTCGAGACTTTATTGCGTGTGATGATATAAGCAGGGTCACAATT AGAGAGTACATGTGATGACTTGAGTGACTGAAAGTTTTGACTACCGTTCC GCCCCGTGCAGCGATTGTAGCCCCCATCCTCATGCTTTCCACTGCTGTCA TGCCTGCGTCATCTGCTTCGCCGCTTTCATCCACATCGACAGGATACATG GCTTTGTGCTTGGCGATTGAGTATGGCAAGACCTTCCCCAAACTGCGGGG AATACTCAGCCCGGACCCCCACGTGCCAATAGCACCTGTCCCTACCCAAC AGAGTAGCGGCAGCAACGGTTATTTGCCCATGGAGTCGTCGACTGCTGTC GACTCAACGGATTTACTCGTCGAGGATGAAGATGTTGCTGCTGAAGCCGT AAGGGTTGATAGTATGTTCAGTTCTCCAACGATTGAAGATGAAAATGGTA CAGAGGTGGTGTTGAAGGACCTTCGAAAGGTGTACCGGACTAAGCAGGTG GCAAATACTTATTGCGTGCTGTAGAATGTTGGAGGCAAGAGTCGGAAACG AGCGAGGAGACAACAGTTCCGATACTTCAATGGCGTTGCACACATCACGT CTAACACGTAACACTCCGTCGGTGGCGGCGAAAGCAGTCGTAATTGATGT CGGTTTCACTCTAGAAGAAATTTAGTAAAAATCAGCCGTTCAGCTTGGCA GAGTCTTCTGTTTTCGTTATGAGAGAGGTCATTTCGCATCCTACCTGGGA TGGGGTCATCGGTTGTGCTCAATGATGGTTCTACCAAAATGTTCTGACAC TTGGCTTTGAGCAGGGACCAAATGTGACGGTGCGCAAGCTTAGCTTTGCG GTGGCAAAGGGGGACTGCTTCGGCGTTTCGGGAATCAACGGTGCTGGTAT GCTTCCGCTTGGATAACACCTTTTTTTCCCGTTGATTGACCGTTGCAGAG CGCGCAAGAGTTCCTACACGTTGTAGCTTTTCCCGTACATTATAGAGGAA TAATATACAAACAAAGCGCCATATCAGTCGAACGTGATGCCACTCATCCG CAATAGCACAATGCTGCTGGAGGTTGCTTGTAGGAAGCGTGCTTCGCGTG TCCGCAAAAACTGAAGGGTACCAACAATTTGTACAAATGTTTGGCCTGTC AACAGGAAAGAGTACAACGCTGGGCATTTTATCTGGAGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig10942:2403..8342+

>mRNA_H-paniculata_contig10942.612.1 ID=mRNA_H-paniculata_contig10942.612.1|Name=mRNA_H-paniculata_contig10942.612.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at H-paniculata_contig10942:2403..8342+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACATCTCTAGCCTGGAAATCAACGAGGTACCTAAAGAGCTTACGCC
ACTCTCGTGGAACATTGCCGGCGCTGACGTTTTGTGTCTCATGGCGTGCC
CCCTAGATGGACATCTCTAGCCTGGAAATCAACGAGGTACCTAAAGAGCT
TACGCCACTCTCGTGGAACATTGCCGGCGCTGACGTTTTGTGTCTCATGG
CGTGCCCCCTAGGATACATGGCTTTGTGCTTGGCGATTGAGTATGGCAAG
ACCTTCCCCAAACTGCGGGGAATACTCAGCCCGGACCCCCACGTGCCAAT
AGCACCTGTCCCTACCCAACAGAGTAGCGGCAGCAACGGTTATTTGCCCA
TGGAGTCGTCGACTGCTGTCGACTCAACGGATTTACTCGTCGAGGATGAA
GATGTTGCTGCTGAAGCCGTAAGGGTTGATAGTATGTTCAGTTCTCCAAC
GATTGAAGATGAAAATGGTACAGAGGTGGTGTTGAAGGACCTTCGAAAGG
TGTACCGGACTAAGCAGGATACATGGCTTTGTGCTTGGCGATTGAGTATG
GCAAGACCTTCCCCAAACTGCGGGGAATACTCAGCCCGGACCCCCACGTG
CCAATAGCACCTGTCCCTACCCAACAGAGTAGCGGCAGCAACGGTTATTT
GCCCATGGAGTCGTCGACTGCTGTCGACTCAACGGATTTACTCGTCGAGG
ATGAAGATGTTGCTGCTGAAGCCGTAAGGGTTGATAGTATGTTCAGTTCT
CCAACGATTGAAGATGAAAATGGTACAGAGGTGGTGTTGAAGGACCTTCG
AAAGGTGTACCGGACTAAGCAGGGACCAAATGTGACGGTGCGCAAGCTTA
GCTTTGCGGTGGCAAAGGGGGACTGCTTCGGCGTTTCGGGAATCAACGGT
GCTGGGACCAAATGTGACGGTGCGCAAGCTTAGCTTTGCGGTGGCAAAGG
GGGACTGCTTCGGCGTTTCGGGAATCAACGGTGCTGGAAAGAGTACAACG
CTGGGCATTTTATCTGGAGATGAAAGAGTACAACGCTGGGCATTTTATCT
GGAGAT
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