mRNA_H-paniculata_contig10934.605.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10934.605.1
Unique NamemRNA_H-paniculata_contig10934.605.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10934.605.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 6.160e-17
Identity = 39/70 (55.71%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    1 LPALKENMLWSEGEEIVAQQDGAISHTGTDTPRKFNELGRDGVWNISLVNQPPQSPDLNIDDLGFFASLK 210
            LPA+KE M W   + +V QQDGA  HTG   P   N  G    W + LV QP QSPDLNI+DLG FASLK
Sbjct:  280 LPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLK 349          
BLAST of mRNA_H-paniculata_contig10934.605.1 vs. uniprot
Match: W4FE75_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FE75_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.600e-13
Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 LPALKENMLWSEGEE---IVAQQDGAISHTGTDTPRKFNELGRDGVWNISLVNQPPQSPDLNIDDLGFFASLKS 213
            LPALK +  W  G E   +  QQD A  H   + P  F     DG W+I + NQPPQSPDLN+ DLGFF S+++
Sbjct:   19 LPALKSSWRWPSGVETGTVFLQQDNARPHIAPEDPA-FVSAASDGGWDIQMRNQPPQSPDLNVLDLGFFNSIQA 91          
BLAST of mRNA_H-paniculata_contig10934.605.1 vs. uniprot
Match: W4H5M7_9STRA (PH domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H5M7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.690e-12
Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 LPALKENMLWSEGEE---IVAQQDGAISHTGTDTPRKFNELGRDGVWNISLVNQPPQSPDLNIDDLGFFASLKS 213
            LPALK +  W  G E   +  QQD A  H   + P  F     DG W+I + NQPPQSPDLN+ DLGFF S+++
Sbjct:  164 LPALKSSWRWPSGVETATVFLQQDNARPHIAPEDPA-FVSAASDGGWDIQMRNQPPQSPDLNVLDLGFFNSIQA 236          
BLAST of mRNA_H-paniculata_contig10934.605.1 vs. uniprot
Match: A0A1Z5JF95_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JF95_FISSO)

HSP 1 Score: 67.4 bits (163), Expect = 1.750e-11
Identity = 36/71 (50.70%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    1 LPALKENMLWSEGEEIVAQQDGAISHTGTDTPRKFNELGRDGVWNISLVNQPPQSPDLNIDDLGFFASLKS 213
            LPA+KE ML SE   I+ QQD A  H   D P    E   DG + IS   QPP SPDLN+ DLGF  S++S
Sbjct:  115 LPAIKEKMLCSERHRIIIQQDNAKPHCDVDDPILI-EAAEDGNFGISFRCQPPNSPDLNVLDLGFLNSIQS 184          
BLAST of mRNA_H-paniculata_contig10934.605.1 vs. uniprot
Match: A0A6G0WM27_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WM27_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.900e-11
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 LPALKENMLWSEGEEIVAQQDGAISHTGTDTPRKFNELGRDGVWNISLVNQPPQSPDLNIDDLGFFASLKS 213
            LPA+K  M + +  +I  QQD A  H+ +   R FN++G    WN++L NQP  SPD N+ DLGFF S++S
Sbjct:  284 LPAIKRKMSFMKNSKIFIQQDNAGPHSKSVNHR-FNQVGSYDGWNVALKNQPANSPDFNVLDLGFFNSIQS 353          
BLAST of mRNA_H-paniculata_contig10934.605.1 vs. uniprot
Match: A0A484LDZ9_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LDZ9_9ASTE)

HSP 1 Score: 62.4 bits (150), Expect = 7.170e-11
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 LPALKENMLWSEGEEIVAQQDGAISHTGTDTPRKFNELGRDGVWNISLVNQPPQSPDLNIDDLGFFASLKS 213
            LPA+KE +  +  + I+ QQD A  H   + P        DG ++I L  QPP SPDLNI DLGFFAS++S
Sbjct:    6 LPAIKEKVPEAITKHIIIQQDNAKPHIDVNDPEFVQAANADG-YSIELTCQPPNSPDLNILDLGFFASIQS 75          
BLAST of mRNA_H-paniculata_contig10934.605.1 vs. uniprot
Match: A0A484MFG5_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484MFG5_9ASTE)

HSP 1 Score: 64.7 bits (156), Expect = 1.620e-10
Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    1 LPALKENMLWSEGEEIVAQQDGAISHTGTDTPRKFNELGRDGVWNISLVNQPPQSPDLNIDDLGFFASLKS 213
            +PA K     +  + ++ QQD A  H   D P +     +DG WNIS+  QPP SPDLN+ DLGFFAS+ S
Sbjct:  276 IPAFKAKWPKTRAKIVIIQQDNAKPHVHPDDPDRVLSCQKDG-WNISIKCQPPNSPDLNVLDLGFFASIDS 345          
BLAST of mRNA_H-paniculata_contig10934.605.1 vs. uniprot
Match: A0A024TPN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TPN5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.980e-10
Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 1
Query:    7 ALKENMLWS---EGEEIVAQQDGAISHTGTDTPRKFNELGRDGVWNISLVNQPPQSPDLNIDDLGFFASLKS 213
            A+K    W    +G +IV QQD A  H G D   +F   G +G W I + NQP QSPDLN+ DLGFF  ++S
Sbjct:   71 AIKSKWTWPLGVDGGDIVIQQDNARPHIGLDDA-EFVTAGEEGGWTIRIQNQPAQSPDLNVLDLGFFNLIQS 141          
BLAST of mRNA_H-paniculata_contig10934.605.1 vs. uniprot
Match: A0A024TAS5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TAS5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.450e-10
Identity = 33/74 (44.59%), Postives = 42/74 (56.76%), Query Frame = 1
Query:    1 LPALKENMLWS---EGEEIVAQQDGAISHTGTDTPRKFNELGRDGVWNISLVNQPPQSPDLNIDDLGFFASLKS 213
            +PA+K    W    +G  IV QQD A  H   D   +F     DG W I + NQP QSPD+N+ DLGFF S++S
Sbjct:   91 VPAIKSKWKWPVGVDGGAIVLQQDNARPHIAPDDA-EFVTASEDGGWTIRIENQPAQSPDMNVLDLGFFNSIQS 163          
BLAST of mRNA_H-paniculata_contig10934.605.1 vs. uniprot
Match: UPI001493C82E (uncharacterized protein LOC117844311 n=2 Tax=Setaria viridis TaxID=4556 RepID=UPI001493C82E)

HSP 1 Score: 63.9 bits (154), Expect = 3.170e-10
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 LPALKENMLWSE-GEEIVAQQDGAISHTGTDTPRKFNELGRDGVWNISLVNQPPQSPDLNIDDLGFFASLKS 213
            LPA+KE     E G  I  QQD A +H   D P  F  + ++  W+I L  QPP SPDLN+ DLGFFA+L++
Sbjct:  389 LPAVKEKWPAEERGRPIFIQQDNAKTHIAVDDP-DFCRVAKEDGWDIRLTCQPPNSPDLNVLDLGFFAALQA 459          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10934.605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE6.160e-1755.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W4FE75_9STRA1.600e-1347.30Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4H5M7_9STRA2.690e-1247.30PH domain-containing protein n=1 Tax=Aphanomyces a... [more]
A0A1Z5JF95_FISSO1.750e-1150.70Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A6G0WM27_9STRA5.900e-1145.07Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A484LDZ9_9ASTE7.170e-1146.48Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A484MFG5_9ASTE1.620e-1045.07Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A024TPN5_9STRA1.980e-1045.83Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024TAS5_9STRA2.450e-1044.59Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
UPI001493C82E3.170e-1047.22uncharacterized protein LOC117844311 n=2 Tax=Setar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10934contigH-paniculata_contig10934:6801..7013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue4.4e-07
Seed eggNOG ortholog4792.ETI44833
Hectar predicted targeting categoryother localisation
EggNOG OGs2EP7I@1,2SSFX@2759,3QHT7@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size213
Cds size192
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928799.8634136-UTR-H-paniculata_contig10934:6800..68211622928799.8634136-UTR-H-paniculata_contig10934:6800..6821Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10934 6801..6821 +
1691480624.6764066-UTR-H-paniculata_contig10934:6800..68211691480624.6764066-UTR-H-paniculata_contig10934:6800..6821Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10934 6801..6821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928799.8764126-CDS-H-paniculata_contig10934:6821..70131622928799.8764126-CDS-H-paniculata_contig10934:6821..7013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10934 6822..7013 +
1691480624.687219-CDS-H-paniculata_contig10934:6821..70131691480624.687219-CDS-H-paniculata_contig10934:6821..7013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10934 6822..7013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10934.605.1prot_H-paniculata_contig10934.605.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10934 6822..7013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10934.605.1

>prot_H-paniculata_contig10934.605.1 ID=prot_H-paniculata_contig10934.605.1|Name=mRNA_H-paniculata_contig10934.605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MLWSEGEEIVAQQDGAISHTGTDTPRKFNELGRDGVWNISLVNQPPQSPD
LNIDDLGFFASLKS
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mRNA from alignment at H-paniculata_contig10934:6801..7013+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10934.605.1 ID=mRNA_H-paniculata_contig10934.605.1|Name=mRNA_H-paniculata_contig10934.605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig10934:6801..7013+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCCGGCATTGAAGGAAAATATGCTGTGGTCGGAGGGTGAGGAAATAGT CGCGCAGCAGGACGGAGCGATCTCCCACACGGGGACAGACACGCCACGGA AGTTCAACGAACTCGGGAGGGACGGGGTGTGGAATATCAGTCTCGTAAAT CAGCCTCCGCAGTCACCAGATCTCAATATTGATGATTTAGGGTTCTTTGC ATCTCTGAAAAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig10934:6801..7013+

>mRNA_H-paniculata_contig10934.605.1 ID=mRNA_H-paniculata_contig10934.605.1|Name=mRNA_H-paniculata_contig10934.605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig10934:6801..7013+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGTGGTCGGAGGGTGAGGAAATAGTCGCGCAGCAGGACGGAGCGAT
CTCCCACACGGGGACAGACACGCCACGGAAGTTCAACGAACTCGGGAGGG
ACGGGGTGTGGAATATCAGTCTCGTAAATCAGCCTCCGCAGTCACCAGAT
CTCAATATTGATGATTTAGGGTTCTTTGCATCTCTGAAAAGTATGCTGTG
GTCGGAGGGTGAGGAAATAGTCGCGCAGCAGGACGGAGCGATCTCCCACA
CGGGGACAGACACGCCACGGAAGTTCAACGAACTCGGGAGGGACGGGGTG
TGGAATATCAGTCTCGTAAATCAGCCTCCGCAGTCACCAGATCTCAATAT
TGATGATTTAGGGTTCTTTGCATCTCTGAAAAGT
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