mRNA_H-paniculata_contig10927.602.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10927.602.1
Unique NamemRNA_H-paniculata_contig10927.602.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10927.602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10927contigH-paniculata_contig10927:5383..5939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size557
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10927.602.1prot_H-paniculata_contig10927.602.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10927 5427..5738 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928799.4411042-UTR-H-paniculata_contig10927:5382..54261622928799.4411042-UTR-H-paniculata_contig10927:5382..5426Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10927 5383..5426 +
1691480624.5082047-UTR-H-paniculata_contig10927:5382..54261691480624.5082047-UTR-H-paniculata_contig10927:5382..5426Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10927 5383..5426 +
1622928799.4882786-UTR-H-paniculata_contig10927:5738..59391622928799.4882786-UTR-H-paniculata_contig10927:5738..5939Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10927 5739..5939 +
1691480624.5333793-UTR-H-paniculata_contig10927:5738..59391691480624.5333793-UTR-H-paniculata_contig10927:5738..5939Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10927 5739..5939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928799.463043-CDS-H-paniculata_contig10927:5426..57381622928799.463043-CDS-H-paniculata_contig10927:5426..5738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10927 5427..5738 +
1691480624.5252175-CDS-H-paniculata_contig10927:5426..57381691480624.5252175-CDS-H-paniculata_contig10927:5426..5738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10927 5427..5738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10927.602.1

>prot_H-paniculata_contig10927.602.1 ID=prot_H-paniculata_contig10927.602.1|Name=mRNA_H-paniculata_contig10927.602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MRSNVRSLIVTPRCIHNRKTDLQHYFTQRLLIMNLPPLRTFYVKTGNPHD
AFNTDTRTDGIRKILSETKTNSNSSTTEGHICLISLDHLLWCKEKLPVKM
VKY*
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mRNA from alignment at H-paniculata_contig10927:5383..5939+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10927.602.1 ID=mRNA_H-paniculata_contig10927.602.1|Name=mRNA_H-paniculata_contig10927.602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=557bp|location=Sequence derived from alignment at H-paniculata_contig10927:5383..5939+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAGGGAGAATCTCTAAAATAGAAAGCCTGCTCAGGACTCGCAAAATGAGA
TCAAACGTAAGAAGCTTGATTGTGACGCCAAGATGCATACACAACCGCAA
AACTGATCTGCAACACTATTTCACGCAAAGACTATTAATAATGAATTTAC
CACCATTACGGACGTTCTACGTGAAGACGGGAAATCCCCACGATGCGTTC
AATACCGACACCCGAACGGACGGAATCAGAAAAATATTGAGTGAGACAAA
AACGAACTCGAACTCCAGCACTACCGAAGGACACATATGCCTGATTTCCT
TAGACCATCTCTTATGGTGTAAAGAAAAACTTCCAGTCAAAATGGTAAAA
TACTGATATTTTTACCCCTTAAGATGATGGATGAAAAATCTCCAGTAGTA
GTAAAAAAAATGTAGTTTTATGATTTTGACTGGAAATGTTTTACACCATA
AGAGATGGCCTTCCACGGACCTACGCCCGAACGGGTAGGGTAGCTCTTGA
ACTGAGCATGACTGGAAATCTAGTCAGAGGTCTTTTAGTGGGTGCAACTC
CCACACT
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Coding sequence (CDS) from alignment at H-paniculata_contig10927:5383..5939+

>mRNA_H-paniculata_contig10927.602.1 ID=mRNA_H-paniculata_contig10927.602.1|Name=mRNA_H-paniculata_contig10927.602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig10927:5383..5939+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGATCAAACGTAAGAAGCTTGATTGTGACGCCAAGATGCATACACAA
CCGCAAAACTGATCTGCAACACTATTTCACGCAAAGACTATTAATAATGA
ATTTACCACCATTACGGACGTTCTACGTGAAGACGGGAAATCCCCACGAT
GCGTTCAATACCGACACCCGAACGGACGGAATCAGAAAAATATTGAGTGA
GACAAAAACGAACTCGAACTCCAGCACTACCGAAGGACACATATGCCTGA
TTTCCTTAGACCATCTCTTATGGTGTAAAGAAAAACTTCCAGTCAAAATG
GTAAAATACTGAATGAGATCAAACGTAAGAAGCTTGATTGTGACGCCAAG
ATGCATACACAACCGCAAAACTGATCTGCAACACTATTTCACGCAAAGAC
TATTAATAATGAATTTACCACCATTACGGACGTTCTACGTGAAGACGGGA
AATCCCCACGATGCGTTCAATACCGACACCCGAACGGACGGAATCAGAAA
AATATTGAGTGAGACAAAAACGAACTCGAACTCCAGCACTACCGAAGGAC
ACATATGCCTGATTTCCTTAGACCATCTCTTATGGTGTAAAGAAAAACTT
CCAGTCAAAATGGTAAAATACTGA
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