mRNA_H-paniculata_contig10908.593.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10908.593.1
Unique NamemRNA_H-paniculata_contig10908.593.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10908.593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10908contigH-paniculata_contig10908:3869..8124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size699
Cds size405
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10908.593.1prot_H-paniculata_contig10908.593.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10908 4163..8124 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928797.1720083-UTR-H-paniculata_contig10908:3868..41621622928797.1720083-UTR-H-paniculata_contig10908:3868..4162Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10908 3869..4162 -
1691480623.9810636-UTR-H-paniculata_contig10908:3868..41621691480623.9810636-UTR-H-paniculata_contig10908:3868..4162Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10908 3869..4162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928797.2054107-CDS-H-paniculata_contig10908:4162..41911622928797.2054107-CDS-H-paniculata_contig10908:4162..4191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10908 4163..4191 -
1691480623.9949825-CDS-H-paniculata_contig10908:4162..41911691480623.9949825-CDS-H-paniculata_contig10908:4162..4191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10908 4163..4191 -
1622928797.2228353-CDS-H-paniculata_contig10908:5324..54231622928797.2228353-CDS-H-paniculata_contig10908:5324..5423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10908 5325..5423 -
1691480624.00509-CDS-H-paniculata_contig10908:5324..54231691480624.00509-CDS-H-paniculata_contig10908:5324..5423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10908 5325..5423 -
1622928797.2351692-CDS-H-paniculata_contig10908:5741..58401622928797.2351692-CDS-H-paniculata_contig10908:5741..5840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10908 5742..5840 -
1691480624.0155537-CDS-H-paniculata_contig10908:5741..58401691480624.0155537-CDS-H-paniculata_contig10908:5741..5840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10908 5742..5840 -
1622928797.2477448-CDS-H-paniculata_contig10908:6375..64741622928797.2477448-CDS-H-paniculata_contig10908:6375..6474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10908 6376..6474 -
1691480624.0253062-CDS-H-paniculata_contig10908:6375..64741691480624.0253062-CDS-H-paniculata_contig10908:6375..6474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10908 6376..6474 -
1622928797.2633195-CDS-H-paniculata_contig10908:8045..81241622928797.2633195-CDS-H-paniculata_contig10908:8045..8124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10908 8046..8124 -
1691480624.0347457-CDS-H-paniculata_contig10908:8045..81241691480624.0347457-CDS-H-paniculata_contig10908:8045..8124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10908 8046..8124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10908.593.1

>prot_H-paniculata_contig10908.593.1 ID=prot_H-paniculata_contig10908.593.1|Name=mRNA_H-paniculata_contig10908.593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
AGTCRGHLEACDTVVDCCPSFACHSRLCVSSDDVPACAGAFDACLFNVDC
CGNLECSNEVCVPPGITSVDAEPFRDCTYNADCCDGCTCAEGECMAPNGM
PTCAREYHSCGSDGDCCDSFECTDGACKAKHKGG*
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mRNA from alignment at H-paniculata_contig10908:3869..8124-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10908.593.1 ID=mRNA_H-paniculata_contig10908.593.1|Name=mRNA_H-paniculata_contig10908.593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4256bp|location=Sequence derived from alignment at H-paniculata_contig10908:3869..8124- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGGCACCTGTCGGGGCCACTTGGAAGCCTGTGACACCGTCGTCGATTG
CTGCCCAAGCTTCGCGTGCCACTCCCGCTGTGAGGACCGGGGTATTTACC
GAGATATATTCATAGTTGTCGGGGTAAATGTTAGACCTTTTAACACCTTT
CAGCGGCAACCTTGAAGCAGGGTTTAGTCCATACTTCAAGGAATGGTGTA
TCGTAGTGTTTCCTAGATTATTTAACATCCCCGCGCTCGAGTTTATCGGG
AACGGAAATGCTATTATTTCATTCGCGGCCGAAAGAGTATGTCTGTCGGC
ACGTCTTGACGACCATCGTTCCAACGACGATTCGAAGGTTCGGCGTGATT
GTACACCGTCTGTAGAGCTTATCCCGGCTTATCCTCCGGAAGTTACTGAT
TTTGTTCTGCTAGATTTTACTTCGGTGTACCTCGCAAAGCTGCTTGACCC
CTTCAAGAAGCTGGCTCCAGGGCGAATCCAACACGGCGAAGCGGCGCAGC
ATCTTCACGATTTAGAAGCTACAGTGGTCCCGAGTTGACACATGAAAGGG
TAGCGTAAGGGTTAGGATTAGGGTTAGGACTAGAGTGGAGCTCGCAGGCT
TTGCTCGCACACAATTTCGACTACATCAAAAATGAACAGCAAGCCACTTA
CTATGAAAATAATCGACACTTTCTTGAGGACACTGCGGGTTTTTCAACAA
AATTGAATTTGAAAAATGTGATTTCTCCGAGTGTTGTGCACCAAAACGAT
CAAAACAAGTAGCATGCGGGTGCCGACGGTGGTCCAGCGCAGCCCGCGCA
TGCGGCGCGTTTTATTTACCCGGTGCCTCAGTCCAACCTCGGTCCTGCCT
TTTGCAAAATGAAGTGCAAGTGGTGAGTCACCGCATTTGCAATATTAGAT
CATGGAATTGACACCGTTCAGGTAGCATTGCCATTCCTAAAAGCCATTTT
TTTGGAGTGCAGTTTTTTTTTTTCATATTGGTTCAATTACAATGTGAGCT
GCAAATGTTTCGCTAACTTTGAATGTAGCACACTTTTACGTGGTAGCCAG
ACGTCGTTTGTTGAGCGGACCGTACCCAACACACTCCGCCCACCAGTCGG
TGCCACAGCGTAGGGCTGCCTTACGGCTATCAGAAGAGCATTGCACGAAA
ATCCAGCGCTCCCATAATGTTGTTAGCATGCTCTTCACGGTTCCCGCGTA
ATGTGTAAATTGAATATTGCGTTCCTAAAATCTGACTGCTAGAAATTACT
CGCAGCAGCCGTTGAAGATCGCAATTGCAAGCTAATCCGCAAGAAATGTT
GTTATATTAGCCTTGGACGCAGCGGCTCACAATCACAGACATGCCTGCAA
CACCGGAATATCTTCATGTCCACCTCGAATATCGCCCAAGAGCAGACAAC
GTTAATCGTGTCACTGACTAGCACGTGCTTCACCAGTATAGCAAGGAAAT
CTGTTTAGCCAACACATGAAACGTTGAAAGTTACACCAGAAAATATATTC
AAACCTTGCGTTGTCTTTTGAGCTCCTGAATCATTCGCGGTTTGCGTTGC
GCAGAATGCTATGCGCAGAGTATTGATCTGTGTGTTGTGACCGCCGTTTG
ACCTTACCTGCCTCCGCTTCGTCGACATGCTGGGACGTCGTCGTTTGCAG
TGTGCGTGAGTTCCGATGATGTTCCAGCCTGTGCTGGGGCGTTCGATGCG
TGCTTGTTCAATGTAGACTGCTGTGGAAATTTAGAGTGCTCCAATGAGGG
TGAGTATTGTAAATAGAGTCTCCGTACTCTGTTTTGAATCTTGTAACTGA
CAAGAATGAAAATCAAAGCTCGGCGGTTGCCCTTGCGTCTATTAGGGTAG
ATACTCTACATCTTCATATATAGTGCGTCGTTTTGTGTTATCCTGACTTT
TGTAGCACTTCACCACTTCCCCTTCTATATAATTCCATCCGAAACTATAT
GTTACGATCAAAGGCTTCCAAGCTTGGTAGTTCAGCCGCCCACCAATGTA
TACAGTAGTACATTAGGATCGTCTAAAGAGTATTTTACGTACATACATGC
TTGCTTTTTGTTGTTGTAGGTGAGTCGCAGTTTGGTTTACAGAGTACTAG
CAGCTTTGTATGATTCGTTCACTATGTTTATAACATATCGCGCATACGCG
TATTTTTGTTGTTCGTAACGTATCGCTCATGCGCAGCTGACTCGCAGCAA
CTGCGGCCCAGTTGATTGTATGCAATGGTTGATATGCCGTTTGCCGTACA
CGCGCGCACGATTGTTGTTCGTTGACACATCTAGTGTGCGTGCCTCCCGG
AATAACATCTGTTGATGCCGAGCCGTTCCGAGACTGCACGTACAATGCCG
ATTGCTGCGATGGTTGCACGTGCGCTGAAGGTGGTGAGTAGAAGCGATGC
TTGTGAAGTATTGTGTCGTAGTCGGCAATGGCGTAATCGCCCATCAAGAG
TTATGTCAGAAGTTTGTGATTCCACGGTAAAGGTACCGTATCCTTGAGGT
TACATAAGATGCTCGTAGTACAAGAATCGATAGCGGATACATTGTTACTA
TTAATACCTTATCAGTTCTAGTTGAGAGAAAAAATAAGGCTCAGCAACGG
AGGGAAATGAGCTTGTACTCGGGTCGTGCAATGGTGCCCCTGCATTACGC
CGACGGCTGCACGCCAACCCCGTTCCGCCACCTTCCACCGTGTGTGTGCA
GAATGCATGGCTCCAAATGGCATGCCTACCTGCGCGCGGGAGTACCACTC
ATGCGGTTCGGATGGGGACTGCTGCGACAGCTTCGAGTGCACCGACGGAG
GTGAGACTGCACAACTTTGTATCCGAAAATAGACACTTTTATCTATGCAA
ACAGAAATATAGCAGCCTATCAACGCAAACGAGGTTCACAATTATTTTGT
TCCCTTTTCTATCAAGTATCAACACATATTCTCCCACCCTTGTTATCACC
ATGATTAACTGGTCGTATTAATTGTTAACTCTAGCCGGCTTTCACTCGTC
GTGTGGTTCTCCGTAAAACCTACGGTGCCCCCACCAACGAGCAGATTTTT
GGGACAGCTTCGCTATCGTAATGGATGAGTGATGTCGTTGTTACGTGGTT
GTATGTCCAGCGGCAGAAACACAGACCCACATCATTGCATCGTTACCTTC
GCGAAACCTATGGTGGAGCAAATGCCAGCAAACAAAGGTTTGCAGTGATG
GAATGCACACGAGTTTCAATTTCAATTTCGGTGGTGCTTGTTTTTGCCAT
TATGGAATGGAAATCTGTTGGAATTGAGGTTCACTGGTGGGGCGTGGATC
TAGGTTCGCGGCGTGCAATAAATTCGTAGTCGGTTCAGAAGGGGCATTTT
TATTGGACCGTTAACAAGGGGCAATGAAGGTGCCAAGTACGTTCAGGGAC
GCGGTGCGTATACAGAGAGGGAAGACGAGTGGATAGTATTTCAGTTCGCA
CCAAATACTTGGGATCCGAAACACTCTCGCTCCTGTCTTTCTAGGATCAT
TTTTTGTTTTTAAAAGACAGAATAATGCAAAAAAAGGTAAAGCAGCGAGA
AAACGCTGTAAGCCCCTACCTACTTCGTGCCGCAAAACCGAGCGTAACAT
TTTCAAGTCACTTACCTCGGAAAAAAAACGACCTTCAGCAGCTACTGTAT
CAAGTTTTGCCGACCAACGTCGCTGTCATGATATAGTTCGCTTGGTTTTC
TCCGGCGGTTAATGATGTCGTCTTTATTTTGGAAGCCAGGTTGGTCAAGA
TGTCACAGTAACCACTAGGCGCTGACTGTTAGCTCGTGAGGTTTTGTGAT
GTCTTGACAACAGCTGATTCCGGGGTGTTTGTGATCCCTTGACAAAGGCT
TTCTTGCTTCGCACCTTCCCACTTGCTGACTAACTCAACCACGCCCGTAC
ATTTTCAACGCGAACTTTCGATCTTGCTCGTAGCATGCAAGGCTAAACAC
AAGGGTGGTTGAACAGCACCGAGCGTGGTGCGATCGCGTTGCCGCTGCTG
CCAACGAGGTGTAACTACCTGGGAGGAACCGCTAGGCGCAGAGACTTGGG
TGGTACAGTGGCATGTGATTGGCACGTGTATCTACGGTGCCATTAAGAGC
TGTTCGGGAGTGGTTGTCAGTGTTGAGTAGCCGAACCATTCCCAGCGGAG
CTCAACGCTGTACAGCTTTCGTGATGCAGGGGATTTTGGTGACTCCAATT
CGATGCGCTGTTCTCTCTGTCGACGGGTGATCCTCTGGGACTACAGTTGT
TGCCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig10908:3869..8124-

>mRNA_H-paniculata_contig10908.593.1 ID=mRNA_H-paniculata_contig10908.593.1|Name=mRNA_H-paniculata_contig10908.593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig10908:3869..8124- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGGCACCTGTCGGGGCCACTTGGAAGCCTGTGACACCGTCGTCGATTG
CTGCCCAAGCTTCGCGTGCCACTCCCGCTGCAGGCACCTGTCGGGGCCAC
TTGGAAGCCTGTGACACCGTCGTCGATTGCTGCCCAAGCTTCGCGTGCCA
CTCCCGCTTGTGCGTGAGTTCCGATGATGTTCCAGCCTGTGCTGGGGCGT
TCGATGCGTGCTTGTTCAATGTAGACTGCTGTGGAAATTTAGAGTGCTCC
AATGAGGTGTGCGTGAGTTCCGATGATGTTCCAGCCTGTGCTGGGGCGTT
CGATGCGTGCTTGTTCAATGTAGACTGCTGTGGAAATTTAGAGTGCTCCA
ATGAGGTGTGCGTGCCTCCCGGAATAACATCTGTTGATGCCGAGCCGTTC
CGAGACTGCACGTACAATGCCGATTGCTGCGATGGTTGCACGTGCGCTGA
AGGTGTGTGCGTGCCTCCCGGAATAACATCTGTTGATGCCGAGCCGTTCC
GAGACTGCACGTACAATGCCGATTGCTGCGATGGTTGCACGTGCGCTGAA
GGTGAATGCATGGCTCCAAATGGCATGCCTACCTGCGCGCGGGAGTACCA
CTCATGCGGTTCGGATGGGGACTGCTGCGACAGCTTCGAGTGCACCGACG
GAGAATGCATGGCTCCAAATGGCATGCCTACCTGCGCGCGGGAGTACCAC
TCATGCGGTTCGGATGGGGACTGCTGCGACAGCTTCGAGTGCACCGACGG
AGCATGCAAGGCTAAACACAAGGGTGGTTGACATGCAAGGCTAAACACAA
GGGTGGTTGA
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