mRNA_H-paniculata_contig10905.591.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig10905.591.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 218 bits (555), Expect = 1.900e-71 Identity = 117/124 (94.35%), Postives = 120/124 (96.77%), Query Frame = 1 Query: 1 MSGKGKGGRGDGKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 372 MSGKGKGGRG KKS TRSAKAGLQFPVGR+GRFLK+GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VKK Sbjct: 1 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_H-paniculata_contig10905.591.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 216 bits (550), Expect = 6.510e-70 Identity = 116/123 (94.31%), Postives = 119/123 (96.75%), Query Frame = 1 Query: 1 MSGKGKGGRGDGKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 369 MSGKGKGGRG KKS TRSAKAGLQFPVGR+GRFLK+GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VK Sbjct: 46 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_H-paniculata_contig10905.591.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 205 bits (522), Expect = 3.120e-66 Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 1 Query: 1 MSGKGKGGRGDGKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360 MSGKGKGGRG KKS ++S+KAGLQFPV RIGR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK Sbjct: 1 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_H-paniculata_contig10905.591.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 204 bits (518), Expect = 7.560e-66 Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 1 Query: 1 MSGKGKGGRGDGKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360 MSGKGKGGRG KK +RSAKAGLQFPVGRIGRF+KQGKY+SRVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK Sbjct: 1 MSGKGKGGRG--KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_H-paniculata_contig10905.591.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 205 bits (522), Expect = 1.600e-65 Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 1 Query: 1 MSGKGKGGRGDGKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360 MSGKGKGGRG KKS ++S+KAGLQFPV RIGR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK Sbjct: 52 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
BLAST of mRNA_H-paniculata_contig10905.591.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 201 bits (511), Expect = 9.720e-65 Identity = 108/123 (87.80%), Postives = 115/123 (93.50%), Query Frame = 1 Query: 1 MSGKGKGGRGDGKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 369 MSGKGKGGRG GKKS T SAKAGLQFPVGRIGR+L+QGKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK K Sbjct: 1 MSGKGKGGRG-GKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_H-paniculata_contig10905.591.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA) HSP 1 Score: 199 bits (507), Expect = 3.960e-64 Identity = 105/120 (87.50%), Postives = 114/120 (95.00%), Query Frame = 1 Query: 1 MSGKGKGGRGDGKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360 MSGKGKGGRG+ KKS T SAKAGLQFPVGRIGR+L+QGKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK Sbjct: 1 MSGKGKGGRGE-KKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119
BLAST of mRNA_H-paniculata_contig10905.591.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA) HSP 1 Score: 199 bits (507), Expect = 7.100e-64 Identity = 102/118 (86.44%), Postives = 115/118 (97.46%), Query Frame = 1 Query: 7 GKGKGGRGDGKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360 GKGKGGRGD KK++++SAKAGLQFPVGR+GRFLKQG+YA RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKK+RI+PRHIQLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK Sbjct: 5 GKGKGGRGD-KKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKK 121
BLAST of mRNA_H-paniculata_contig10905.591.1 vs. uniprot
Match: A0A061QUG5_9CHLO (Histone H2A n=4 Tax=core chlorophytes TaxID=2692248 RepID=A0A061QUG5_9CHLO) HSP 1 Score: 199 bits (506), Expect = 8.300e-64 Identity = 104/124 (83.87%), Postives = 116/124 (93.55%), Query Frame = 1 Query: 1 MSGKGKGGRGDGKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 372 MSG+GKG GKK+++RSAKAGLQFPVGR+ R+LK+GKYA+R+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG+VTIASGGVLPNIH+VLLPKK KK Sbjct: 1 MSGRGKGKSAAGKKAVSRSAKAGLQFPVGRVARYLKKGKYATRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIASGGVLPNIHSVLLPKKSDKK 124
BLAST of mRNA_H-paniculata_contig10905.591.1 vs. uniprot
Match: A0A835ZBB6_9STRA (Histone H2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB6_9STRA) HSP 1 Score: 198 bits (504), Expect = 1.570e-63 Identity = 105/125 (84.00%), Postives = 115/125 (92.00%), Query Frame = 1 Query: 1 MSGKGKGGRG-DGKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 372 M+GKGKGGRG +GKK ++SAKAGLQFPV R+GR+LKQG+YA RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHIQLAVRNDEELN+LLG VTIASGGVLPNIHAVLLPKK K Sbjct: 1 MAGKGKGGRGAEGKKITSQSAKAGLQFPVARMGRYLKQGRYADRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNRLLGNVTIASGGVLPNIHAVLLPKKTAAK 125 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10905.591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10905.591.1 >prot_H-paniculata_contig10905.591.1 ID=prot_H-paniculata_contig10905.591.1|Name=mRNA_H-paniculata_contig10905.591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp MSGKGKGGRGDGKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVback to top mRNA from alignment at H-paniculata_contig10905:1581..1958+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10905.591.1 ID=mRNA_H-paniculata_contig10905.591.1|Name=mRNA_H-paniculata_contig10905.591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at H-paniculata_contig10905:1581..1958+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10905:1581..1958+ >mRNA_H-paniculata_contig10905.591.1 ID=mRNA_H-paniculata_contig10905.591.1|Name=mRNA_H-paniculata_contig10905.591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig10905:1581..1958+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |