mRNA_H-paniculata_contig10894.576.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10894.576.1
Unique NamemRNA_H-paniculata_contig10894.576.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10894.576.1 vs. uniprot
Match: D7G9C3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C3_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.280e-38
Identity = 68/84 (80.95%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:    1 ASLPVKLVVEGSPLALKREALGLDLSGPEPLLSFGDVFIHGGKTFRIIKVKNEGTLPAMLMWSMQDANVDAKEAKRTVDVLVKV 252
            ASLP+K+VVEGSPL+LKREALGLD+SGPEPLL+FG+VF+HGGKTFRIIKVKNEGTLPAML W MQDAN+DAKEA + VDV +K+
Sbjct:  477 ASLPMKVVVEGSPLSLKREALGLDMSGPEPLLNFGEVFVHGGKTFRIIKVKNEGTLPAMLTWGMQDANIDAKEAAKKVDVCLKI 560
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BLAST of mRNA_H-paniculata_contig10894.576.1 vs. uniprot
Match: A0A7S2AJL7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AJL7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.730e-8
Identity = 29/82 (35.37%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:    1 ASLPVKLVVEGSPLALKREALGLD-LSGPEPLLSFGDVFIHGGKTFRIIKVKNEGTLPAMLMWSMQDANVDAKEAKRTVDVL 243
            A L +K+ + G PL+L +E +G+D ++G  P L FGDV +      ++++++NEG + A++ W ++D  +D     R VDVL
Sbjct:   19 ARLNLKMQITGCPLSLVKENVGIDVMTGDVPWLRFGDVVVGSPDVTKLLRIRNEGPISALVNWQVKDL-LDVGSEDRKVDVL 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10894.576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9C3_ECTSI2.280e-3880.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2AJL7_9STRA5.730e-835.37Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10894contigH-paniculata_contig10894:803..1890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue2.3e-32
Seed eggNOG ortholog2880.D7G9C3
Preferred nameDLEC1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008285,GO:0042127,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0065007
EggNOG free text desc.negative regulation of cell proliferation
EggNOG OGs28IDE@1,2QQQ5@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size254
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928793.174023-CDS-H-paniculata_contig10894:802..9071622928793.174023-CDS-H-paniculata_contig10894:802..907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10894 803..907 -
1691480622.366344-CDS-H-paniculata_contig10894:802..9071691480622.366344-CDS-H-paniculata_contig10894:802..907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10894 803..907 -
1622928793.1937218-CDS-H-paniculata_contig10894:1743..18901622928793.1937218-CDS-H-paniculata_contig10894:1743..1890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10894 1744..1890 -
1691480622.3780665-CDS-H-paniculata_contig10894:1743..18901691480622.3780665-CDS-H-paniculata_contig10894:1743..1890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10894 1744..1890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10894.576.1prot_H-paniculata_contig10894.576.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10894 803..1890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10894.576.1

>prot_H-paniculata_contig10894.576.1 ID=prot_H-paniculata_contig10894.576.1|Name=mRNA_H-paniculata_contig10894.576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
ASLPVKLVVEGSPLALKREALGLDLSGPEPLLSFGDVFIHGGKTFRIIKV
KNEGTLPAMLMWSMQDANVDAKEAKRTVDVLVKV
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mRNA from alignment at H-paniculata_contig10894:803..1890-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10894.576.1 ID=mRNA_H-paniculata_contig10894.576.1|Name=mRNA_H-paniculata_contig10894.576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1088bp|location=Sequence derived from alignment at H-paniculata_contig10894:803..1890- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTCCTTACCAGTGAAGCTGGTGGTCGAGGGCTCCCCCCTTGCCCTGAA
ACGGGAAGCCTTGGGGCTTGACCTGTCTGGACCCGAGCCGCTGCTTAGTT
TTGGCGACGTGTTCATCCACGGTGGCAAAACGTTCCGCATTATCAAGGTA
CAGGGCAAAGCAGCGCCTGCAGCGGAGGGTAATAGGGGTCATCGCTGATC
TAGGCGTACAGCATGATATACATAACATATACGACAGAAGAAATAGCTCA
TGCACTCCATGCGATCAAAGATACTATACTCACGACGATTTTGCTTTCTT
GCTGTATTTTGGTCCGTTTCTGTGTAGCATTCGTTCCTAATCGCCGCTGC
CTCTCTCTCTCTCTCTCCCCAGATGGCAGGCACGGGTCACGTTCAAGGTT
GAATACTGGCTAGGAAGGGTGAATGACATATTTTTCCCTATATAGGATTG
GCGATTGACGTATTTGCAATACCTGTAGCCCACTTCGGAGTTTGGTTTCA
AGGGCTGATGGGTTTGCCCTGGAGGAGCTTACAATGCTGCTAGTCACTCG
GGCTCCGTTTTCAGCTCGCCACGATATCAAGTCAACATCTCTTACTGCTT
ATTGGTACTAATGGCATGTACCTTGACCAAGTACAAACCGACATATGCTT
TGTGAAGTCCAGAGTCTTGCATTTAGTGCCTATTGGACAAGCTTCGGACA
ATAAAACCGCCGAACAGTGAAAGCTAACTATGAACGACTCTAACGGCAAA
CAGCATTTAATCGTGGCATCTACTCCACAAACTCGGCAGCGAACATCGTT
CAAATCGTTGAAGCACTAACCGATCATCATAACGTCACAACGCCGATGAT
ATTGAAGCTCATTTTCTACTTCATCCATATCCATACACCTGAATACTTTT
CTGCGTCGAGTATTCCAAGCCAGGTCAAATACTACGATATATAACTACAC
GGACGTTTGTGGTTTGGTGACTCGCTGTGACAGGTGAAAAACGAAGGCAC
CTTGCCGGCGATGCTGATGTGGTCGATGCAAGACGCAAACGTCGACGCGA
AGGAGGCCAAGAGAACGGTCGACGTATTAGTGAAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig10894:803..1890-

>mRNA_H-paniculata_contig10894.576.1 ID=mRNA_H-paniculata_contig10894.576.1|Name=mRNA_H-paniculata_contig10894.576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig10894:803..1890- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTCCTTACCAGTGAAGCTGGTGGTCGAGGGCTCCCCCCTTGCCCTGAA
ACGGGAAGCCTTGGGGCTTGACCTGTCTGGACCCGAGCCGCTGCTTAGTT
TTGGCGACGTGTTCATCCACGGTGGCAAAACGTTCCGCATTATCAAGGCC
TCCTTACCAGTGAAGCTGGTGGTCGAGGGCTCCCCCCTTGCCCTGAAACG
GGAAGCCTTGGGGCTTGACCTGTCTGGACCCGAGCCGCTGCTTAGTTTTG
GCGACGTGTTCATCCACGGTGGCAAAACGTTCCGCATTATCAAGGTGAAA
AACGAAGGCACCTTGCCGGCGATGCTGATGTGGTCGATGCAAGACGCAAA
CGTCGACGCGAAGGAGGCCAAGAGAACGGTCGACGTATTAGTGAAGGTAG
TGAAAAACGAAGGCACCTTGCCGGCGATGCTGATGTGGTCGATGCAAGAC
GCAAACGTCGACGCGAAGGAGGCCAAGAGAACGGTCGACGTATTAGTGAA
GGTA
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