mRNA_H-paniculata_contig10851.540.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10851.540.1
Unique NamemRNA_H-paniculata_contig10851.540.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10851.540.1 vs. uniprot
Match: D8LAX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX8_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 4.950e-25
Identity = 62/115 (53.91%), Postives = 76/115 (66.09%), Query Frame = 2 
Query:  341 VPLRLAQEWRVRGGEYPQSRVQLRAGGAMGSASRGMAAEVKPPTVVFGNEWGRKREWRRTDYNENDVDEFMSSCYFKAPVNGTRMLRRNEGDEG-SADMEEMELVRRIKSFKEKR 682
             PL LAQEW  RGG       + R     G    G A    PPTV+FGNEWGRKREWRRT Y ++D+D  M SC+F+ P N T +LRR++  EG  AD+EEMELVRRIKSF+++R
Sbjct:  388 APLGLAQEWTPRGGTGAGGSSRRRDHSDTGWGVGGPAGV--PPTVMFGNEWGRKREWRRTGYTDDDIDPGMGSCFFRTPANSTGVLRRSDLGEGMGADLEEMELVRRIKSFRQRR 500
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BLAST of mRNA_H-paniculata_contig10851.540.1 vs. uniprot
Match: A0A6H5JPA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA7_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.070e-24
Identity = 61/115 (53.04%), Postives = 77/115 (66.96%), Query Frame = 2 
Query:  341 VPLRLAQEWRVRGGEYPQSRVQLRAGGAMGSASRGMAAEVKPPTVVFGNEWGRKREWRRTDYNENDVDEFMSSCYFKAPVNGTRMLRRNEGDEGS-ADMEEMELVRRIKSFKEKR 682
             PL LAQEW  RGG       + R     G  + G   E  PPTV+FGNEWGRKREWRRT Y ++D+D  M SC+F+ P N T +LRR++  EG+ AD+EEMELVRRIKS +++R
Sbjct:  691 APLGLAQEWTPRGGTGAGGSSRRRDHSDTGGGAGG--PEGVPPTVMFGNEWGRKREWRRTGYTDDDIDPEMGSCFFRTPANSTGVLRRSDLGEGTGADLEEMELVRRIKSLRQRR 803
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10851.540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAX8_ECTSI4.950e-2553.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPA7_9PHAE2.070e-2453.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10851contigH-paniculata_contig10851:1729..4912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue6.1e-24
Seed eggNOG ortholog2880.D8LAX8
Hectar predicted targeting categoryother localisation
EggNOG OGs2DZXI@1,2S7DW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size3184
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10851.540.1prot_H-paniculata_contig10851.540.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10851 1913..2413 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928788.6861494-UTR-H-paniculata_contig10851:1728..19121622928788.6861494-UTR-H-paniculata_contig10851:1728..1912Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10851 1729..1912 +
1691480620.3332262-UTR-H-paniculata_contig10851:1728..19121691480620.3332262-UTR-H-paniculata_contig10851:1728..1912Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10851 1729..1912 +
1622928788.7311838-UTR-H-paniculata_contig10851:2413..49121622928788.7311838-UTR-H-paniculata_contig10851:2413..4912Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10851 2414..4912 +
1691480620.3580036-UTR-H-paniculata_contig10851:2413..49121691480620.3580036-UTR-H-paniculata_contig10851:2413..4912Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10851 2414..4912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928788.7044747-CDS-H-paniculata_contig10851:1912..24131622928788.7044747-CDS-H-paniculata_contig10851:1912..2413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10851 1913..2413 +
1691480620.34737-CDS-H-paniculata_contig10851:1912..24131691480620.34737-CDS-H-paniculata_contig10851:1912..2413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10851 1913..2413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10851.540.1

>prot_H-paniculata_contig10851.540.1 ID=prot_H-paniculata_contig10851.540.1|Name=mRNA_H-paniculata_contig10851.540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
MGSGDGVGAAWAFHVAPTYSPETVCTTVDELTSRCLDNENCGEYRVEAPA
FPVPLRLAQEWRVRGGEYPQSRVQLRAGGAMGSASRGMAAEVKPPTVVFG
NEWGRKREWRRTDYNENDVDEFMSSCYFKAPVNGTRMLRRNEGDEGSADM
EEMELVRRIKSFKEKR*
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mRNA from alignment at H-paniculata_contig10851:1729..4912+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10851.540.1 ID=mRNA_H-paniculata_contig10851.540.1|Name=mRNA_H-paniculata_contig10851.540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3184bp|location=Sequence derived from alignment at H-paniculata_contig10851:1729..4912+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAGCCACAGGAAACACGGAGGTGCGGGGCGGGGGAGGAGGAGGTGCAA
ATGATGAGGAAGGGGCGGGTGATGAGATATCGCAGACGAGGGCGGCAAGG
AGCGAAGGTTATGATATATGGCAAAAACGCCGCGACGAGGGGAAGACACG
GGCGGAGCTTGACGGGCGAGGCTCTTCCAGAGTTATGGGTTCTGGCGATG
GCGTCGGTGCCGCCTGGGCATTTCATGTCGCACCGACGTACTCCCCGGAG
ACAGTGTGCACTACGGTGGATGAGTTGACCAGTCGTTGCTTGGATAATGA
GAACTGCGGCGAGTATAGAGTGGAGGCCCCCGCCTTCCCGGTGCCATTGC
GTCTGGCCCAGGAATGGCGTGTCCGAGGCGGAGAATACCCGCAGTCGCGG
GTACAGTTAAGGGCGGGTGGGGCAATGGGAAGCGCTAGCCGCGGGATGGC
CGCCGAGGTCAAGCCTCCGACGGTTGTGTTTGGGAACGAATGGGGGCGGA
AACGTGAGTGGCGGCGGACGGACTACAATGAGAACGACGTGGACGAATTC
ATGTCGTCGTGCTACTTCAAGGCGCCGGTCAACGGCACGCGGATGCTGAG
GAGGAACGAGGGAGACGAGGGGTCTGCGGACATGGAGGAGATGGAGCTTG
TCCGTCGGATCAAGAGCTTCAAGGAGAAGCGTTGATGAGGGAGAGGGGAT
ACTGGAGGGTAGGAGGTGATGGCACTCGACTGAAAGGTGTGCAATCTGTT
GATCGGGGTATCTGTTTTGCCCCTTTCCTCCATCGTGCGTTTTCGTGGGC
CCTGTGGCAAACACATACTGAGACTATGGAGACGTACGTCGGAACGAGAA
GTGACAGTCAGAAAAGATAGCCCCTGGGTCCTTTGAACAACGTAAAACTT
CCTGAAAGTCGTGTAGTTGTCACGGGTGTGCTATCAGTCCTTGGAATGAG
GTAGATGCGTTGGGTTTGATGAGGTCTGTACCAAAACACCATCCTCAGGG
AGAGCTCTCTCTCGCGCGATCCAAAATCCCAGAGATTTGTTGTTGTAGGG
CTCTAGGCCGAGATAGAAAGTGTACGTGTCTGGGTTGCGACGAGAAGCAC
TGTTGGCACGTGAGAAAGAATACCCGTTACAGCAGACACGATGCGGTCAT
CGGGTGGGAGCGGTACGGAGGCCTTTTGTTGCGTTCCGTGTGAGCTCGTT
AAAATGTCCCGCGGTGCCTATCGCGCTGATGCATTGCCCGATCCCCCTCT
TTTAGAGTAAGTGGCTGGGGAGCGTTGTGAAGCACGTTATATCCCTCCAG
TTGGCGGTTTCTCGATGAACCATACCCTGGATTACCTTCGTCGGTCTTTC
GTCGTAATTTAGGGTATTTTTCAATGCATCTGAAGAACCTGTAGTTCGAT
CTTGTCTGATGCCATAACCAGGTTTCAATCGTGCACACAGTATGGTTTAC
AACGAACGTGTTGTTGTGCCGGTGTGATAATTTGCCGATATTTTCGGGGC
TACCGTTAGCGTTATCCCAGTTCACGCGGCCTGTTTTAATTGTAGTGCTT
CAAAGTTGCGTACAATGACGTCAATCGTTTCAAGTCATTGGGTAAACGGC
TTTTTCGGGTTACCGTTTACTCTCACACGTGGACGAAGTTTGTCAAATGC
GCACGCGCACGGGGGGGTATCAGTAAACAGGTGGAGGGTACCATCGAAGA
ACAGCAGTGCAGTGTCTGGTTCCCGCTTTTGTCTCACTTTTGTGTTCGCG
TCTGTTGCCCGTGTTGTTTGTCGCCTTGTGTGCCAATGTAGCATCATGAC
TATATCGAGAGAGATTAGAGACTGGCGCACAGCTACAGTACTGCGAAGTT
AGCAGTCGTGGTGTTGGACGTTGTTAACCCGAGGATGCTGCTTTGTTTGT
CCATGCAGTTCAAGGTCGCCCCAGCAGTTGGCCGGACCCTTGTGCGGTAC
AGTGGAATTGTTGCGACCATGGGGTCGTCGTTTTGTTAGTGCGGTGTCTA
TTGTCTGTCGTGTTTTTTGCGTCGCTGGGTGCAGCAGAGCAAGCCTTCTC
CGTTGCGCGTTATTCGGACGTGGTTTAAGTGTGTTTCGCACTCCAGTGGA
CAGCGAGTTGGTGATGTAGTCTTTTCGGCGTTCGCTCTCTCCGTGCGTGG
TCTGTAGGCGAGACCGACAAGAGACCCCCGTTGTTTAGATTCTTGGTTCT
GGGCCACATAGGTTTTGTGGTGTCCTTTCGTGAACGTAGGTGATGTAGAG
AGGAAGGCGATCCTGTGGGCACCTTTTCCCTTTCTCTGTAGCTGTACGTA
CGGTGGTAGACCCATCGGTGTGCGCTGTGCACGTATATATATACGAACGA
ACCAGACCCAATTTTTGGGTTGTCTCTAATGTCGCACTCGTTCAGTCAGT
ATTGTGTCATCGGCATGTGTTATAACAAAATCAGTACGTTGGTGTTCGAT
GGTTGAAGATAAATATGAATAGTGTTTCTTTTGTAGAGGCGAAATTTAGT
GAACATCATTGTCTACATCAACCTCGGCGGGGGTTGGCTGAGCCGCTCTT
ATTCTGCAAAGAAAGGAGCTGTGGTTATTGCTGTCGATGGCACACAATGT
TACCATTGCTGCCTACTACAACGTACCATCGTTTATTTTGTTGTTCTTTC
GTGGACATCCTACACGCCGCGTCACAGGGTTCGAGGGGTCACATACCAGA
CAAGAAAATGTAGATAAGTTGTTCTACCGGTTGATAAGGCCTTCGCCCTT
GGCACACGAGATAAATAGAGCATCGATCGGCGAAGGTGAACCAATGAGCT
TGGCATTATGTCGGTTTGTTTGTCTCTCTTTCTTGATGCACCCAGCGTGT
TCTCGTGTTTCGACCTGTGGTTGCTGTATTTCAACGTTGTCTTTTGCGGC
TAGCGCTACGGAAGTGCTATGCGTTAGACGAGTGCTGCCCATCAGGCGTC
AGAAAGTAGGCGAGATGAGAGAAACGATTGATTCGACGGGACTGGCTAGC
TCTCCCTTACATCATGAGAAAATGGTACCGAGTATAAAATAATCTCTGGT
TCTCGGTGCCCTCTATTTCGTCCATCAGTTGAGCGGGTCGTTGGCTCGAA
GATTTTAAAGTTGACTGTTGGCTGACTTGGGGCTTTAGTCGACTGCACCT
TATGTACATAATCATAGTCCCCTGCTGTTCGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig10851:1729..4912+

>mRNA_H-paniculata_contig10851.540.1 ID=mRNA_H-paniculata_contig10851.540.1|Name=mRNA_H-paniculata_contig10851.540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig10851:1729..4912+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTTCTGGCGATGGCGTCGGTGCCGCCTGGGCATTTCATGTCGCACC
GACGTACTCCCCGGAGACAGTGTGCACTACGGTGGATGAGTTGACCAGTC
GTTGCTTGGATAATGAGAACTGCGGCGAGTATAGAGTGGAGGCCCCCGCC
TTCCCGGTGCCATTGCGTCTGGCCCAGGAATGGCGTGTCCGAGGCGGAGA
ATACCCGCAGTCGCGGGTACAGTTAAGGGCGGGTGGGGCAATGGGAAGCG
CTAGCCGCGGGATGGCCGCCGAGGTCAAGCCTCCGACGGTTGTGTTTGGG
AACGAATGGGGGCGGAAACGTGAGTGGCGGCGGACGGACTACAATGAGAA
CGACGTGGACGAATTCATGTCGTCGTGCTACTTCAAGGCGCCGGTCAACG
GCACGCGGATGCTGAGGAGGAACGAGGGAGACGAGGGGTCTGCGGACATG
GAGGAGATGGAGCTTGTCCGTCGGATCAAGAGCTTCAAGGAGAAGCGTTG
AATGGGTTCTGGCGATGGCGTCGGTGCCGCCTGGGCATTTCATGTCGCAC
CGACGTACTCCCCGGAGACAGTGTGCACTACGGTGGATGAGTTGACCAGT
CGTTGCTTGGATAATGAGAACTGCGGCGAGTATAGAGTGGAGGCCCCCGC
CTTCCCGGTGCCATTGCGTCTGGCCCAGGAATGGCGTGTCCGAGGCGGAG
AATACCCGCAGTCGCGGGTACAGTTAAGGGCGGGTGGGGCAATGGGAAGC
GCTAGCCGCGGGATGGCCGCCGAGGTCAAGCCTCCGACGGTTGTGTTTGG
GAACGAATGGGGGCGGAAACGTGAGTGGCGGCGGACGGACTACAATGAGA
ACGACGTGGACGAATTCATGTCGTCGTGCTACTTCAAGGCGCCGGTCAAC
GGCACGCGGATGCTGAGGAGGAACGAGGGAGACGAGGGGTCTGCGGACAT
GGAGGAGATGGAGCTTGTCCGTCGGATCAAGAGCTTCAAGGAGAAGCGTT
GA
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