mRNA_H-paniculata_contig1085.539.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1085.539.1 vs. uniprot
Match: A0A4S4K4J9_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K4J9_9APHY) HSP 1 Score: 114 bits (284), Expect = 1.400e-25 Identity = 75/208 (36.06%), Postives = 109/208 (52.40%), Query Frame = 1 Query: 1 AGRCWNMNLPDDLNTLGFEQSHADPCKF-RTLVTRES--VAIFASHVDDLLALNITKEVI*AFVGDLRSICKIKDLGAASYYMGCHITRNREKKGLKFNHHFYAQMITDRFEINK-----TAMVPMTAGDRSQ---TPEEKGKVRRSPYLEAVGALMWASTMSWPDISSAVCTAAKCCENPGMVNWKAVVKIQLYVRRTQGTGTTYGG 591 AGR W L D L +GF +S D F R L E A+ HVDD+ L K+ + + LRS ++ + G Y +G HITR+REK+ + F+ Y I R+ ++ T M P A + Q + +K +++ PY EA+GALM+AS + PDI+ AV T AK +NPG +W A+ ++ Y+R TQ T GG Sbjct: 63 AGRRWYQKLRDALRQIGFTRSQFDHAVFYRRLSPAEGSGTAVIFCHVDDM-GLKANKKYMPQLIAALRSRFELSEGGRIHYLLGMHITRDREKRTISFSQXAYINRILTRYRFDEVRTVTTPMDPNVALSKEQCAISERQKEEMKDKPYREALGALMYASVGTRPDITYAVSTLAKFSQNPGPTHWTALKRVFAYLRGTQHYTLTLGG 269
BLAST of mRNA_H-paniculata_contig1085.539.1 vs. uniprot
Match: A0A4S4K5L2_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K5L2_9APHY) HSP 1 Score: 114 bits (286), Expect = 2.390e-25 Identity = 75/208 (36.06%), Postives = 109/208 (52.40%), Query Frame = 1 Query: 1 AGRCWNMNLPDDLNTLGFEQSHADPCKF-RTLVTRES--VAIFASHVDDLLALNITKEVI*AFVGDLRSICKIKDLGAASYYMGCHITRNREKKGLKFNHHFYAQMITDRFEINK-----TAMVPMTAGDRSQ---TPEEKGKVRRSPYLEAVGALMWASTMSWPDISSAVCTAAKCCENPGMVNWKAVVKIQLYVRRTQGTGTTYGG 591 AGR W L D L +GF +S D F R L E A+ HVDD+ L K+ + + LRS ++ + G Y +G HITR+REK+ + F+ Y I R+ ++ T M P A + Q + +K +++ PY EA+GALM+AS + PDI+ AV T AK +NPG +W A+ ++ Y+R TQ T GG Sbjct: 408 AGRRWYQKLRDALRQIGFTRSQFDHAVFYRRLSPAEGSGTAVIVCHVDDM-GLKANKKYMPQLIAALRSRFELSEGGRIHYLLGMHITRDREKRTISFSQSAYINRILTRYRFDEVRTVTTPMDPNVALSKEQCAISERQKEEMKDKPYREALGALMYASVGTRPDITYAVSTLAKFSQNPGPTHWTALKRVFAYLRGTQHYTLTLGG 614
BLAST of mRNA_H-paniculata_contig1085.539.1 vs. uniprot
Match: A0A6H5FV69_9HEMI (Uncharacterized protein n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5FV69_9HEMI) HSP 1 Score: 113 bits (282), Expect = 8.620e-25 Identity = 76/233 (32.62%), Postives = 120/233 (51.50%), Query Frame = 1 Query: 1 AGRCWNMNLPDDLNTLGFEQSHADPCKFRTLVTRESVAIFASHVDDLLALNITKEVI*AFVGDLRSICKIKDLGAASYYMGCHITRNREKKGLKFNHHFYAQMITDRFEINKT--AMVPMTAGDR---SQTP---EEKGKVRRSPYLEAVGALMWASTMSWPDISSAVCTAAKCCENPGMVNWKAVVKIQLYVRRTQGTGTTYGGGGNGGIEMRAFADSGHATCLDTRRSISG 675 A R WN+ L L +G QS D C + + + I A VDD L + K++ L K+ D+GAA + +G ITR+R K + + Y + + RF + + + +PM++ ++ Q P EE+ K+ + PY EAVG+L++AS +S PDI+ AV + ++ NPG +W AV +I YVR T + G N M + D+ A +D RRS++G Sbjct: 543 ASRAWNLKLDACLKEIGLLQSKFDTCVYYKR-SDGGLLIVAVWVDDFLIFSDNKKLKKQLKTHLTKTFKMTDMGAAKFVLGFQITRDRNSKKIWISQQAYLEQVLKRFNMENSNPSRIPMSSNEKLSHQQEPKSEEERMKMNKIPYQEAVGSLLFASQVSRPDIAQAVNSVSRFNGNPGPAHWIAVKRILRYVRGTTDYKLQFDG--NKSSVMHGYCDADWAADIDERRSLTG 772
BLAST of mRNA_H-paniculata_contig1085.539.1 vs. uniprot
Match: A0A0J7K6A2_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K6A2_LASNI) HSP 1 Score: 112 bits (280), Expect = 1.280e-24 Identity = 75/234 (32.05%), Postives = 116/234 (49.57%), Query Frame = 1 Query: 1 AGRCWNMNLPDDLNTLGFEQSHADPCKFRTLVTRESVAIFASHVDDLLALNITKEVI*AFVGDLRSICKIKDLGAASYYMGCHITRNREKKGLKFNHHFYAQMITDRFEINKTAMVPMTAGDRSQTPEEKG--------KVRRSPYLEAVGALMWASTMSWPDISSAVCTAAKCCENPGMVNWKAVVKIQLYVRRTQGTGTTYGGGGNGGIEMRAFADSGHATCLDTRRSISGS 678 GR WN L + L G +S ADPC ++T TR+ + I A +VDD L L+ + I L+ +KDLG ++G +I N EK ++ + Y + RF + V A + +E G +++ +PYLEAVG L++ S +S PDI+ AV + C NPG +W AV +I Y++ T+ + N I F+D+ D+R+SI+GS Sbjct: 381 GGRTWNKKLDEILKDYGLTKSKADPCVYQTSNTRDRL-IVAVYVDDHLILSNKQTEIRELKEHLQRKLHMKDLGKVQQFLGMNIMNNSEKGKIEIHQKEYIEKALTRFRMENCNSVSTPADPNIKLTKEMGPKDKADIEEMKNTPYLEAVGTLLYISQISRPDIAYAVNNVSCFCNNPGKAHWNAVKQIFRYLKGTKDYKLKFCKNANTNIV--GFSDANWTNDQDSRKSITGS 611
BLAST of mRNA_H-paniculata_contig1085.539.1 vs. uniprot
Match: A0A1M2VSW8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VSW8_TRAPU) HSP 1 Score: 110 bits (276), Expect = 1.630e-24 Identity = 76/235 (32.34%), Postives = 121/235 (51.49%), Query Frame = 1 Query: 1 AGRCWNMNLPDDLNTLGFEQSHADPCKFRTLVTRES--VAIFASHVDDLLALNITKEVI*AFVGDLRSICKIKDLGAASYYMGCHITRNREKKGLKFNHHFYAQMITDRFEIN-----KTAMVPMTAGDRSQTPE---EKGKVRRSPYLEAVGALMWASTMSWPDISSAVCTAAKCCENPGMVNWKAVVKIQLYVRRTQGTGTTYGGGGNGGIEMRAFADSGHATCLDTRRSISG 675 GR W L L LGF ++ AD + R+ + I A HVDD L + ++ + L + K+ DLG S+ +G ++R+ L + H Y + I RF + T M P + +SQ PE + ++RR PY EA+G+LM+A+ + PDI+ AV T A+ +NPG V+W+AV ++ Y+ T+ YGGG G + + D+ A+ + RR+I+G Sbjct: 81 GGRKWYETLSAALADLGFTRAEAD---YGVFFKRDGTHLVILAIHVDDCLITGSSTRLLAEYKRQLAAKYKLTDLGPVSWLLGIKVSRDLSAHTLALSQHAYIEAIITRFNFDDLKPISTPMDPTSQLSKSQCPESAADVARMRRVPYKEAIGSLMYAAMGTRPDIAFAVSTLAQFSQNPGWVHWEAVKRVFRYLLGTKTLSLIYGGGQRG---LEGYVDADGAS-QEHRRAITG 308
BLAST of mRNA_H-paniculata_contig1085.539.1 vs. uniprot
Match: A0A4S4KPR6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4KPR6_9APHY) HSP 1 Score: 110 bits (274), Expect = 8.360e-24 Identity = 74/208 (35.58%), Postives = 108/208 (51.92%), Query Frame = 1 Query: 1 AGRCWNMNLPDDLNTLGFEQSHADPCKF-RTLVTRES--VAIFASHVDDLLALNITKEVI*AFVGDLRSICKIKDLGAASYYMGCHITRNREKKGLKFNHHFYAQMITDRFEINK-----TAMVPMTAGDRSQ---TPEEKGKVRRSPYLEAVGALMWASTMSWPDISSAVCTAAKCCENPGMVNWKAVVKIQLYVRRTQGTGTTYGG 591 AGR W L D L +GF S D F R L E A+ HVDD+ L K+ + + L+S ++ + G Y +G HITR+REK+ + F+ Y I R+ ++ T M P A + Q + +K +++ PY EA+GALM+AS + PDI+ AV T AK +NPG +W A+ ++ Y+R TQ T GG Sbjct: 158 AGRRWYQKLRDALRQIGFTCSQFDHAVFYRRLSPAEGSGTAVIFCHVDDM-GLKANKKYMPQLITALKSRFELSEGGRIHYLLGMHITRDREKRTISFSQGAYINRILTRYRFDEVRTVTTPMDPNVALSKEQCAISERQKEEMKDKPYREALGALMYASVGTRPDITYAVSTLAKFSQNPGPTHWTALKRVFAYLRGTQHYTLTLGG 364
BLAST of mRNA_H-paniculata_contig1085.539.1 vs. uniprot
Match: A0A2G8SFR3_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SFR3_9APHY) HSP 1 Score: 108 bits (269), Expect = 4.730e-23 Identity = 77/235 (32.77%), Postives = 119/235 (50.64%), Query Frame = 1 Query: 1 AGRCWNMNLPDDLNTLGFEQSHADPCKFRTLVTRES--VAIFASHVDDLLALNITKEVI*AFVGDLRSICKIKDLGAASYYMGCHITRNREKKGLKFNHHFYAQMITDRFEIN-----KTAMVPMTAGDRSQTPE---EKGKVRRSPYLEAVGALMWASTMSWPDISSAVCTAAKCCENPGMVNWKAVVKIQLYVRRTQGTGTTYGGGGNGGIEMRAFADSGHATCLDTRRSISG 675 GR W L L LGF + AD F RE + + A HVDD + + + ++ L + K+ DLG S+ +G +TR+ E + L + H Y I RF + T M P ++Q PE + +++R PY EA+GALM+A+ + PDI+ AV T A+ ENPG +W+AV ++ Y+ T+ YGGG +G + F D+ + + RR+I+G Sbjct: 1167 GGRKWYETLCAALADLGFGRVEADHGIF---FKREDGHLVVLAVHVDDCIITGDSGSLNNSYKTQLSTRYKLTDLGPVSWVLGIKVTRDLEARTLSLSQHSYIDSIITRFNFDDLKPISTPMDPHLQLSKTQCPESALDVARMKRVPYREAIGALMYAAMGTRPDIAFAVSTLAQYSENPGWTHWEAVKRVFRYLVGTRHLSLVYGGGKDG---LEGFVDA-DGSSQEHRRAITG 1394
BLAST of mRNA_H-paniculata_contig1085.539.1 vs. uniprot
Match: A0A4V3X9I7_9APHY (Integrase catalytic domain-containing protein n=3 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4V3X9I7_9APHY) HSP 1 Score: 107 bits (266), Expect = 1.140e-22 Identity = 74/208 (35.58%), Postives = 105/208 (50.48%), Query Frame = 1 Query: 1 AGRCWNMNLPDDLNTLGFEQSHADPCKF-RTLVTRES--VAIFASHVDDLLALNITKEVI*AFVGDLRSICKIKDLGAASYYMGCHITRNREKKGLKFNHHFYAQMITDRFEINK-----TAMVPMTAGDRSQ---TPEEKGKVRRSPYLEAVGALMWASTMSWPDISSAVCTAAKCCENPGMVNWKAVVKIQLYVRRTQGTGTTYGG 591 AGR W L D L +GF +S D F R L E A+ HVDD+ L K+ + + LRS ++ + G Y +G HITR+REK+ + F+ Y I R+ T M P A + Q + +K +++ PY EA+GALM+AS + PDI+ AV T AK +NPG +W A+ + Y+ TQ T GG Sbjct: 670 AGRRWYQKLRDALRQIGFTRSQFDHAVFYRRLSPAEGSGTAVIFCHVDDM-GLKANKKYMPQLITALRSRFELSEGGRIXYLLGMHITRDREKRTISFSQXAYINRILTRYXFXXVRTVTTPMDPNVALSKEQCAISERQKEEMKDKPYREALGALMYASVGTRPDITYAVSTLAKFSQNPGPTHWTALKXVFAYLCGTQHYTLTLGG 876
BLAST of mRNA_H-paniculata_contig1085.539.1 vs. uniprot
Match: A0A4S4K8S3_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K8S3_9APHY) HSP 1 Score: 106 bits (264), Expect = 2.110e-22 Identity = 74/208 (35.58%), Postives = 105/208 (50.48%), Query Frame = 1 Query: 1 AGRCWNMNLPDDLNTLGFEQSHADPCKF-RTLVTRES--VAIFASHVDDLLALNITKEVI*AFVGDLRSICKIKDLGAASYYMGCHITRNREKKGLKFNHHFYAQMITDRFEINK-----TAMVPMTAGDRSQ---TPEEKGKVRRSPYLEAVGALMWASTMSWPDISSAVCTAAKCCENPGMVNWKAVVKIQLYVRRTQGTGTTYGG 591 AGR W L D L +GF S D F R L E A HVDD+ L K+ + + LRS ++ + G Y +G HITR+REK + F+ Y I R+ ++ T M P A + Q + +K +++ Y EA+GALM+AS + PDI+ AV T AK +NPG +W A+ ++ Y+R TQ T GG Sbjct: 727 AGRRWYQKLRDALRQIGFTCSQFDHAVFYRRLSPAEGSGTATIFCHVDDM-GLKANKKYMPQLIAALRSRFELSEGGQIHYLLGMHITRDREKHTISFSQSAYINRIVTRYRFDEVRTVTTPMDPNVALSKEQCAISERQKEEMKDKLYREALGALMYASVGTRPDITYAVSTLAKFSQNPGPTHWTALKRVFAYLRGTQHYTLTLGG 933
BLAST of mRNA_H-paniculata_contig1085.539.1 vs. uniprot
Match: A0A0A9Z147_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z147_LYGHE) HSP 1 Score: 103 bits (258), Expect = 2.840e-22 Identity = 71/233 (30.47%), Postives = 120/233 (51.50%), Query Frame = 1 Query: 1 AGRCWNMNLPDDLNTLGFEQSHADPCKFRTLVTRESVAIFASHVDDLLALNITKEVI*AFVGDLRSICKIKDLGAASYYMGCHITRNREKKGLKFNHHFYAQMITDRFEINKTAMV--PMTAGDR------SQTPEEKGKVRRSPYLEAVGALMWASTMSWPDISSAVCTAAKCCENPGMVNWKAVVKIQLYVRRTQGTGTTYGGGGNGGIEMRAFADSGHATCLDTRRSISG 675 A R WN L L + G QS D C + + +S+ I A VDDLL + +++ L K+ DLG A +G +TR+R+ K + + Y + + RF ++ V PM+ ++ QT +E+ ++R+ PY EA+G+L++A+ +S PDI+ A+ + ++ NPGM +W V ++ Y+R T + G G I + D+ A+ D RRS++G Sbjct: 19 ASRIWNQKLDLVLQSFGLTQSKFDSCVYFK-IDGKSMLIVAVWVDDLLIFSNDRKLKKQVKLRLTRSFKMTDLGEAKSVLGFQLTRDRQAKRIWISQQHYIEEMLKRFHMDAANPVTTPMSNSEKFSKNQAPQTADERERMRKIPYQEAIGSLLFAAQVSRPDIAFAISSLSRFNNNPGMAHWTGVKRVFRYLRGTSSYKLQFDGLKAGPIH--GYCDADWASDPDERRSVTG 248 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1085.539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1085.539.1 >prot_H-paniculata_contig1085.539.1 ID=prot_H-paniculata_contig1085.539.1|Name=mRNA_H-paniculata_contig1085.539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp MGCHITRNREKKGLKFNHHFYAQMITDRFEINKTAMVPMTAGDRSQTPEEback to top mRNA from alignment at H-paniculata_contig1085:8676..9446- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1085.539.1 ID=mRNA_H-paniculata_contig1085.539.1|Name=mRNA_H-paniculata_contig1085.539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=771bp|location=Sequence derived from alignment at H-paniculata_contig1085:8676..9446- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1085:8676..9446- >mRNA_H-paniculata_contig1085.539.1 ID=mRNA_H-paniculata_contig1085.539.1|Name=mRNA_H-paniculata_contig1085.539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig1085:8676..9446- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |