mRNA_H-paniculata_contig1084.538.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1084.538.1
Unique NamemRNA_H-paniculata_contig1084.538.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1084.538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1084contigH-paniculata_contig1084:12117..12849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size184
Cds size168
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1084.538.1prot_H-paniculata_contig1084.538.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1084 12117..12835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928788.4987853-CDS-H-paniculata_contig1084:12116..121371622928788.4987853-CDS-H-paniculata_contig1084:12116..12137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1084 12117..12137 -
1691480620.2773182-CDS-H-paniculata_contig1084:12116..121371691480620.2773182-CDS-H-paniculata_contig1084:12116..12137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1084 12117..12137 -
1622928788.514337-CDS-H-paniculata_contig1084:12688..128351622928788.514337-CDS-H-paniculata_contig1084:12688..12835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1084 12689..12835 -
1691480620.2853858-CDS-H-paniculata_contig1084:12688..128351691480620.2853858-CDS-H-paniculata_contig1084:12688..12835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1084 12689..12835 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928788.5280607-UTR-H-paniculata_contig1084:12835..128491622928788.5280607-UTR-H-paniculata_contig1084:12835..12849Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1084 12836..12849 -
1691480620.2966747-UTR-H-paniculata_contig1084:12835..128491691480620.2966747-UTR-H-paniculata_contig1084:12835..12849Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1084 12836..12849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1084.538.1

>prot_H-paniculata_contig1084.538.1 ID=prot_H-paniculata_contig1084.538.1|Name=mRNA_H-paniculata_contig1084.538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MGSKPTHCAIITPTPLCVPRVSAGTSDTGSLYCVSTSGRLELYCCAPHQG
LSRLRV
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mRNA from alignment at H-paniculata_contig1084:12117..12849-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1084.538.1 ID=mRNA_H-paniculata_contig1084.538.1|Name=mRNA_H-paniculata_contig1084.538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=733bp|location=Sequence derived from alignment at H-paniculata_contig1084:12117..12849- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGAATGTAATCGATGGGGTCCAAACCTACCCACTGTGCCATCATTACA
CCTACGCCTTTGTGCGTACCGCGGGTATCGGCGGGTACGAGCGATACAGG
CTCACTGTACTGTGTGAGCACTAGTGGGCGTCTTGAACTATACTGCTGTG
CGCCACACCAGGTGATCGTTTCGGCAGATATTTGGACCGTGTTTTCATGT
TCCAACCCTGCCAGCCAGACAGTCAGTGGTGCTTCTCTTTGTACATGGGC
AAACGAATATTGATGGCATGGAAAACAGCCTGTACGCGTTGCCTACTCTA
GCCTACATAGAGAACACCCACAGTAGTCACTATGCGCTCCATACTCGTGA
TCAGCTGCAGCAAAACTCGAAAAGTTTCCTCAACACATACTACAGGGTTG
AACGGTGACTACTGTACTACAGGTGGAACAACGGTGCATGCCGATACATG
TGTAGCTACACGAGTTGAAGTTTCTCAAATATTCGCACAATTCAGGCATG
AGAATGATGAAGAAACAATTGCCCAGCATTTCCGGTAATGTGTTGCAGTG
GGCACATGATTGGCCCAAGCGAACATGTCATATCACAAGGACAGGCACAA
ACTTTTCAAGTATTAACTGCCTTGCTCTTCTCCCGTTCGATCCTTGCTGT
CCGCTCTTAACGCCCTTCTGCCGGCCCTGTCGATCAAACCCGACATATTT
GTGACGACATAGGGTCTCTCTCGCCTACGCGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig1084:12117..12849-

>mRNA_H-paniculata_contig1084.538.1 ID=mRNA_H-paniculata_contig1084.538.1|Name=mRNA_H-paniculata_contig1084.538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig1084:12117..12849- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGTCCAAACCTACCCACTGTGCCATCATTACACCTACGCCTTTGTG
CGTACCGCGGGTATCGGCGGGTACGAGCGATACAGGCTCACTGTACTGTG
TGAGCACTAGTGGGCGTCTTGAACTATACTGCTGTGCGCCACACCAGATG
GGGTCCAAACCTACCCACTGTGCCATCATTACACCTACGCCTTTGTGCGT
ACCGCGGGTATCGGCGGGTACGAGCGATACAGGCTCACTGTACTGTGTGA
GCACTAGTGGGCGTCTTGAACTATACTGCTGTGCGCCACACCAGGGTCTC
TCTCGCCTACGCGTCGGTCTCTCTCGCCTACGCGTC
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