mRNA_H-paniculata_contig10796.508.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10796.508.1
Unique NamemRNA_H-paniculata_contig10796.508.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10796.508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10796contigH-paniculata_contig10796:7595..8095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size501
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10796.508.1prot_H-paniculata_contig10796.508.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10796 7614..7949 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928783.5867057-UTR-H-paniculata_contig10796:7594..76131622928783.5867057-UTR-H-paniculata_contig10796:7594..7613Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10796 7595..7613 +
1691480618.2230456-UTR-H-paniculata_contig10796:7594..76131691480618.2230456-UTR-H-paniculata_contig10796:7594..7613Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10796 7595..7613 +
1622928783.6205025-UTR-H-paniculata_contig10796:7949..80951622928783.6205025-UTR-H-paniculata_contig10796:7949..8095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10796 7950..8095 +
1691480618.2396543-UTR-H-paniculata_contig10796:7949..80951691480618.2396543-UTR-H-paniculata_contig10796:7949..8095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10796 7950..8095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928783.6016467-CDS-H-paniculata_contig10796:7613..79491622928783.6016467-CDS-H-paniculata_contig10796:7613..7949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10796 7614..7949 +
1691480618.2312086-CDS-H-paniculata_contig10796:7613..79491691480618.2312086-CDS-H-paniculata_contig10796:7613..7949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10796 7614..7949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10796.508.1

>prot_H-paniculata_contig10796.508.1 ID=prot_H-paniculata_contig10796.508.1|Name=mRNA_H-paniculata_contig10796.508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MVNGSFRLCQGLFNFIFLCFFFMYLLKKGMGAVTALTKEYPLMVDRRLVV
WRKLKGRFQLFGVFCVFILDCYCEMNDLVSTVQRTAILHHFLSEEMLSVH
NDVGVGTGRRS*
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mRNA from alignment at H-paniculata_contig10796:7595..8095+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10796.508.1 ID=mRNA_H-paniculata_contig10796.508.1|Name=mRNA_H-paniculata_contig10796.508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=501bp|location=Sequence derived from alignment at H-paniculata_contig10796:7595..8095+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTACATAGCGATCGCCGATGGTCAATGGCTCCTTTCGTTTATGCCAAG
GCTTGTTCAACTTCATTTTTTTGTGTTTTTTTTTTATGTATCTACTGAAA
AAGGGAATGGGAGCGGTGACCGCTCTTACGAAAGAATACCCCCTCATGGT
CGATCGGCGCCTTGTCGTCTGGAGGAAACTGAAGGGCCGATTTCAGCTTT
TTGGGGTGTTTTGTGTTTTTATCCTTGACTGCTATTGTGAGATGAATGAC
CTCGTATCTACAGTGCAAAGAACTGCGATATTACATCATTTTCTGTCGGA
GGAAATGCTCAGTGTTCACAACGACGTCGGCGTCGGGACGGGACGGAGAA
GCTAGAAATCTAGCGTAGGTAGGTTGCCCAGAGAGAGTTCGCCAACGCTA
TCTACCGTAGATTGAAGAGCATCAAAACCCCCAGAGTATATAAATATGGA
ACATTTTTCTGGGCGAGATTTATTCCACACAACCATGCGATATTCGTCGA
G
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Coding sequence (CDS) from alignment at H-paniculata_contig10796:7595..8095+

>mRNA_H-paniculata_contig10796.508.1 ID=mRNA_H-paniculata_contig10796.508.1|Name=mRNA_H-paniculata_contig10796.508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig10796:7595..8095+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCAATGGCTCCTTTCGTTTATGCCAAGGCTTGTTCAACTTCATTTT
TTTGTGTTTTTTTTTTATGTATCTACTGAAAAAGGGAATGGGAGCGGTGA
CCGCTCTTACGAAAGAATACCCCCTCATGGTCGATCGGCGCCTTGTCGTC
TGGAGGAAACTGAAGGGCCGATTTCAGCTTTTTGGGGTGTTTTGTGTTTT
TATCCTTGACTGCTATTGTGAGATGAATGACCTCGTATCTACAGTGCAAA
GAACTGCGATATTACATCATTTTCTGTCGGAGGAAATGCTCAGTGTTCAC
AACGACGTCGGCGTCGGGACGGGACGGAGAAGCTAGATGGTCAATGGCTC
CTTTCGTTTATGCCAAGGCTTGTTCAACTTCATTTTTTTGTGTTTTTTTT
TTATGTATCTACTGAAAAAGGGAATGGGAGCGGTGACCGCTCTTACGAAA
GAATACCCCCTCATGGTCGATCGGCGCCTTGTCGTCTGGAGGAAACTGAA
GGGCCGATTTCAGCTTTTTGGGGTGTTTTGTGTTTTTATCCTTGACTGCT
ATTGTGAGATGAATGACCTCGTATCTACAGTGCAAAGAACTGCGATATTA
CATCATTTTCTGTCGGAGGAAATGCTCAGTGTTCACAACGACGTCGGCGT
CGGGACGGGACGGAGAAGCTAG
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