mRNA_H-paniculata_contig10791.505.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10791.505.1
Unique NamemRNA_H-paniculata_contig10791.505.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10791.505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10791contigH-paniculata_contig10791:3028..6032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1037
Cds size981
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10791.505.1prot_H-paniculata_contig10791.505.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10791 3082..6032 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928783.1963027-UTR-H-paniculata_contig10791:3027..30811622928783.1963027-UTR-H-paniculata_contig10791:3027..3081Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10791 3028..3081 +
1691480618.0684-UTR-H-paniculata_contig10791:3027..30811691480618.0684-UTR-H-paniculata_contig10791:3027..3081Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10791 3028..3081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928783.2100093-CDS-H-paniculata_contig10791:3081..31691622928783.2100093-CDS-H-paniculata_contig10791:3081..3169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10791 3082..3169 +
1691480618.0869167-CDS-H-paniculata_contig10791:3081..31691691480618.0869167-CDS-H-paniculata_contig10791:3081..3169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10791 3082..3169 +
1622928783.2276435-CDS-H-paniculata_contig10791:4885..55231622928783.2276435-CDS-H-paniculata_contig10791:4885..5523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10791 4886..5523 +
1691480618.1045554-CDS-H-paniculata_contig10791:4885..55231691480618.1045554-CDS-H-paniculata_contig10791:4885..5523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10791 4886..5523 +
1622928783.2465081-CDS-H-paniculata_contig10791:5777..60321622928783.2465081-CDS-H-paniculata_contig10791:5777..6032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10791 5778..6032 +
1691480618.1155446-CDS-H-paniculata_contig10791:5777..60321691480618.1155446-CDS-H-paniculata_contig10791:5777..6032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10791 5778..6032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10791.505.1

>prot_H-paniculata_contig10791.505.1 ID=prot_H-paniculata_contig10791.505.1|Name=mRNA_H-paniculata_contig10791.505.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=327bp
MKECWVCRSQSHPDAECPDRIRPTATVQQEGTQHNPFRPPMTALRRRSLP
PQQQTQGHSFDSPPRLPSQHFRHPRPRRPLSAASGEPTADFPTAPGSGDG
GGGGDGGGSSGGSSTTVMNSGPSGADLKQRRSPPPRPPPLANHSARPRPS
TNELQHSDRFPRGTSRTRWSNDAVDRGWRQDSSWKAARGGGQSRGGMGSD
RDEKLGMLGMAGAECGRNEVRHLSGTTVMYAAAQHAVEDLAAAPPVRRAL
ILLACGMGIGADRNAFLATLCATILGAGATLWYAALPPPRPSPSSSSSAP
LSGPSLYRFWVRPPPVDNNEAMGGLWG
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mRNA from alignment at H-paniculata_contig10791:3028..6032+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10791.505.1 ID=mRNA_H-paniculata_contig10791.505.1|Name=mRNA_H-paniculata_contig10791.505.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3005bp|location=Sequence derived from alignment at H-paniculata_contig10791:3028..6032+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATATGTTGTATGCCTGATACGCTAAAGCTGCTGAACCTGTGTTCACAA
GGGCATGAAGGAGTGTTGGGTGTGCCGCAGCCAATCTCATCCTGATGCTG
AATGTCCCGATCGCATTCGTCCGACAGCGACCGTTCAACAAGGTGGATAT
TGACTTACAAATCCGCTTTCTGTGATCAGCGCAGACAGTGCTACGGTACA
GGAGTAGAGTACCGTCAGTACAGTAGTGCAAAGAGCAAAATGATGACATT
CGTGGTTGCCTGTTGTACTATAGGCTGAGGCACCCGCTGCGTGCTCTGTG
CTCACGCTGTGGGCTAGCACTTATGTGCCTTTAGTATTGATCAGAATGCT
CTGCTACAGATGATCCAGTTTGTAGCGTTTTTACCGCCTTCGTACACACA
GATAATTCTGTGATGTAGTAATTCACACCACAAGTGGGGTAGTTCAATGT
TTTCTGTTCTTTATGACGAAGACATGTATAACTTTCTACCTACACCCACG
ACAGCAATGCACCAACCTAGGTTAGCTTTTACAACTCTTTAACATTGTCC
ATACTTTTGTACGAGTCGTTGCTTTCGAATTCGCGGAACTGTGCAGAGTT
CAAGTTGTGTTGCAAATTGCTGCTTTTAGAAAAGAAACACTCGATAAATT
TCGTTAAATCGTCAACCAAAGACGGAATTGTTTTTGCGCCAATATTGTGT
TATTAATAATAGTACTCTACAATTACTGCATTATGGAGAGCATCATAGGT
GTTGCCTGAGCTGTGATCGAAGTCACCGATATTGTACCACAGAAAATCTT
GCTACAAAGCACATGGGAGCAGTAGCCACATCGCTTGCAGAGTACAGTGA
CCAATGATTCTTTGTCGAGGGTCGAGTGCAGAGAACTCACCAATATATTA
TTACACCATAGTTATACCAAAGACATGTCAGACCACAGATAAAACCCCCG
GAAGGCTAAGTAAGGCAAAAACCTTTATCGATGCTGCCATACTCAAGTAT
TTCTGCCGAAGTATTTCTACATTTCCTTGAACAGGACAGAGTTATTTATT
CCTCTGGGGGGCAGGCGCCACCCCGGTTCGGTCGAACCAAGTAGTAGGCA
GTGTGGGGGTTGCACCCACTAAAAGACCTCTGACTAGACTTCCAGCCATG
CTCAGTTCACGAGCTACCCTACCCGTTCGAGCGTAGATCCGTGGATCAAG
CAAGCCGGATACTGGCACATGAATATTGGATATTTTCAAGCTGTGATCAC
TCGAGTAATTAGGAACGTGCACCTCATATTTCCCCTCCGAGTACGAGTGA
AGCAATATGAAGAATCAAAGATAAAAATATCAAGATCCAAGCGAAAAGTC
TCTCTCTCCCTCCAAGCTCCCTCAATCAAGGCTTGCAGATAAGCAATAGG
CGAAATCGTACTGTCTGTATCACTTACTTGTTCACGGTATGGTTGACAAT
AATCCTGGGTAGGTAGAGCACGCTTTACAACTCTCACGATTTCAAGATCA
GACACAATTGGAAGCTATCTGCTTTACCATTCTTTATTCTCGTGCTGTTG
AGTAAGCATGGGTTCTTTGGATGGCGACCGAGAGGTCTCGAACATGGTGA
TACTGACGGCTATTGGTCCGTTGCGCAGTAGTGGTCCCCTCCATGTATCT
GTCGTATAGCAACCACCTACCCTCAAACCCGTAGGCACGCATCACGGGAC
GGGCCACTTGCCTATGAATATAGCCGGGCATTCCTAGCCCGATATGTGCC
GCCCACGATCGTACAATTGCCCCGCTCACAACAACCGCCGGACCTTTCGC
CCGCTTCTCTCTTGTGCTGGATTGAGACCTTCTCATCGCTATGCACGCCT
GAAAGCAGAAGGCACACAGCACAACCCGTTTCGTCCACCCATGACAGCAC
TGCGACGGCGATCGCTGCCCCCCCAACAACAGACCCAAGGTCATTCCTTC
GACAGCCCCCCAAGACTCCCATCCCAACATTTCCGACATCCGCGGCCTCG
GCGGCCTCTAAGTGCTGCCAGCGGCGAGCCAACCGCTGACTTTCCGACCG
CCCCTGGTAGCGGTGACGGCGGCGGCGGCGGTGATGGTGGTGGGAGCAGC
GGTGGGAGCAGCACAACTGTCATGAACTCTGGTCCCAGCGGTGCAGACCT
GAAACAACGACGGTCTCCGCCGCCGCGACCACCGCCCTTGGCCAATCACA
GCGCGAGACCGCGACCCTCGACCAATGAGCTGCAGCATTCCGATAGGTTT
CCCCGCGGTACAAGTCGCACGCGTTGGTCCAATGACGCGGTAGACAGGGG
TTGGCGCCAGGACTCATCATGGAAAGCTGCCAGGGGCGGGGGGCAGTCGC
GTGGGGGGATGGGTTCGGACCGCGATGAGAAGTTGGGAATGTTAGGAATG
GCGGGTGCTGAGTGCGGGCGGAACGAGGTGCGGCATCTCTCTGGGACAAC
GGTTATGTACGCAGCGGCGCAGCATGCTGTGGAGGACCTTGCGGCGGTGA
GCTCTTAGAAACTTTGTGTATCGATGCCATAATCATCACGCGTTCGGTGT
AAGTTTGTACATAGTGTAGTGCTGCTGAAATCCTATGATAATTACTCCAT
GTGTGTTATCATACTAAGTGTGTTTTGCTGTAGTTGAACTAAATATATTC
CGTGTGCCTGGATCGAAACACTTGGCAGACTTCTTCGCTACAACTCTACC
ACCTCATACCGGTATGCGTCCCCCCCATCCCCACTTTTTACCCTATGAAG
GCACCGCCGGTACGCCGCGCGTTGATTCTGCTAGCTTGTGGCATGGGTAT
AGGGGCAGACAGGAACGCTTTTCTTGCCACCCTGTGCGCGACCATTCTCG
GCGCAGGCGCAACGCTGTGGTACGCAGCATTGCCACCCCCACGCCCTTCA
CCAAGCTCCAGCTCTTCCGCGCCTTTGAGCGGACCATCTCTCTATAGGTT
CTGGGTGCGACCGCCACCCGTGGACAACAATGAAGCGATGGGTGGGCTTT
GGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig10791:3028..6032+

>mRNA_H-paniculata_contig10791.505.1 ID=mRNA_H-paniculata_contig10791.505.1|Name=mRNA_H-paniculata_contig10791.505.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1962bp|location=Sequence derived from alignment at H-paniculata_contig10791:3028..6032+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGAGTGTTGGGTGTGCCGCAGCCAATCTCATCCTGATGCTGAATG
TCCCGATCGCATTCGTCCGACAGCGACCGTTCAACAAGATGAAGGAGTGT
TGGGTGTGCCGCAGCCAATCTCATCCTGATGCTGAATGTCCCGATCGCAT
TCGTCCGACAGCGACCGTTCAACAAGAAGGCACACAGCACAACCCGTTTC
GTCCACCCATGACAGCACTGCGACGGCGATCGCTGCCCCCCCAACAACAG
ACCCAAGGTCATTCCTTCGACAGCCCCCCAAGACTCCCATCCCAACATTT
CCGACATCCGCGGCCTCGGCGGCCTCTAAGTGCTGCCAGCGGCGAGCCAA
CCGCTGACTTTCCGACCGCCCCTGGTAGCGGTGACGGCGGCGGCGGCGGT
GATGGTGGTGGGAGCAGCGGTGGGAGCAGCACAACTGTCATGAACTCTGG
TCCCAGCGGTGCAGACCTGAAACAACGACGGTCTCCGCCGCCGCGACCAC
CGCCCTTGGCCAATCACAGCGCGAGACCGCGACCCTCGACCAATGAGCTG
CAGCATTCCGATAGGTTTCCCCGCGGTACAAGTCGCACGCGTTGGTCCAA
TGACGCGGTAGACAGGGGTTGGCGCCAGGACTCATCATGGAAAGCTGCCA
GGGGCGGGGGGCAGTCGCGTGGGGGGATGGGTTCGGACCGCGATGAGAAG
TTGGGAATGTTAGGAATGGCGGGTGCTGAGTGCGGGCGGAACGAGGTGCG
GCATCTCTCTGGGACAACGGTTATGTACGCAGCGGCGCAGCATGCTGTGG
AGGACCTTGCGGCGAAGGCACACAGCACAACCCGTTTCGTCCACCCATGA
CAGCACTGCGACGGCGATCGCTGCCCCCCCAACAACAGACCCAAGGTCAT
TCCTTCGACAGCCCCCCAAGACTCCCATCCCAACATTTCCGACATCCGCG
GCCTCGGCGGCCTCTAAGTGCTGCCAGCGGCGAGCCAACCGCTGACTTTC
CGACCGCCCCTGGTAGCGGTGACGGCGGCGGCGGCGGTGATGGTGGTGGG
AGCAGCGGTGGGAGCAGCACAACTGTCATGAACTCTGGTCCCAGCGGTGC
AGACCTGAAACAACGACGGTCTCCGCCGCCGCGACCACCGCCCTTGGCCA
ATCACAGCGCGAGACCGCGACCCTCGACCAATGAGCTGCAGCATTCCGAT
AGGTTTCCCCGCGGTACAAGTCGCACGCGTTGGTCCAATGACGCGGTAGA
CAGGGGTTGGCGCCAGGACTCATCATGGAAAGCTGCCAGGGGCGGGGGGC
AGTCGCGTGGGGGGATGGGTTCGGACCGCGATGAGAAGTTGGGAATGTTA
GGAATGGCGGGTGCTGAGTGCGGGCGGAACGAGGTGCGGCATCTCTCTGG
GACAACGGTTATGTACGCAGCGGCGCAGCATGCTGTGGAGGACCTTGCGG
CGGCACCGCCGGTACGCCGCGCGTTGATTCTGCTAGCTTGTGGCATGGGT
ATAGGGGCAGACAGGAACGCTTTTCTTGCCACCCTGTGCGCGACCATTCT
CGGCGCAGGCGCAACGCTGTGGTACGCAGCATTGCCACCCCCACGCCCTT
CACCAAGCTCCAGCTCTTCCGCGCCTTTGAGCGGACCATCTCTCTATAGG
TTCTGGGTGCGACCGCCACCCGTGGACAACAATGAAGCGATGGGTGGGCT
TTGGGGGGCACCGCCGGTACGCCGCGCGTTGATTCTGCTAGCTTGTGGCA
TGGGTATAGGGGCAGACAGGAACGCTTTTCTTGCCACCCTGTGCGCGACC
ATTCTCGGCGCAGGCGCAACGCTGTGGTACGCAGCATTGCCACCCCCACG
CCCTTCACCAAGCTCCAGCTCTTCCGCGCCTTTGAGCGGACCATCTCTCT
ATAGGTTCTGGGTGCGACCGCCACCCGTGGACAACAATGAAGCGATGGGT
GGGCTTTGGGGG
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