mRNA_H-paniculata_contig10790.504.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10790.504.1
Unique NamemRNA_H-paniculata_contig10790.504.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10790.504.1 vs. uniprot
Match: D8LNA3_ECTSI (Kinesin-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNA3_ECTSI)

HSP 1 Score: 420 bits (1079), Expect = 1.220e-138
Identity = 218/247 (88.26%), Postives = 226/247 (91.50%), Query Frame = 1 
Query:    1 TGSGKTFTMVGIQKNATHDLFQQLSRMPSGDNLSVHVSFFEIYGGRCQDLLNHRHRCVVREDGKGEVVIAGLEEKEAVDEEALEVLIADGNRNRTTHATESNDQSSRSHAICQVSVRENSTGRLYGKLSLIDLAGSERGTDTKSHNRQRRMEGADINKSLLALKECIRALDSESVHVPYRASKLTLVLKDSFTRKGARTVMIATVSPGASAADHTINTLRYADRVKENKVEQFKPVQPSMSNSANAG 741
            TGSGKT+TMVGIQKNAT DLF QL +MP G +LSVHVSFFEIYGGRCQDLLNHRHRCVVREDGKGEVVIAGL+EKEA+D E LE  IADGNRNRTTHATESNDQSSRSHAICQ+ VR+ S GRLYGKLSLIDLAGSERG DTKSHNRQRRMEGADINKSLLALKECIRALDS+SVHVPYRASKLTLVLKDSFTRK ARTVMIATVSPGASAADHTINTLRYADRVKENKVEQFKPV       ANAG
Sbjct:  171 TGSGKTYTMVGIQKNATSDLFDQLGQMPGGGSLSVHVSFFEIYGGRCQDLLNHRHRCVVREDGKGEVVIAGLQEKEAMDAEGLEEFIADGNRNRTTHATESNDQSSRSHAICQICVRDVSNGRLYGKLSLIDLAGSERGADTKSHNRQRRMEGADINKSLLALKECIRALDSDSVHVPYRASKLTLVLKDSFTRKAARTVMIATVSPGASAADHTINTLRYADRVKENKVEQFKPV-------ANAG 410
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BLAST of mRNA_H-paniculata_contig10790.504.1 vs. uniprot
Match: A0A7S4D754_HETAK (Kinesin-like protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D754_HETAK)

HSP 1 Score: 325 bits (832), Expect = 4.550e-108
Identity = 169/231 (73.16%), Postives = 188/231 (81.39%), Query Frame = 1 
Query:    1 TGSGKTFTMVGIQKNATHDLFQQLSRMPSGDNLSVHVSFFEIYGGRCQDLLNHRHRCVVREDGKGEVVIAGLEEKEAVDEEALEVLIADGNRNRTTHATESNDQSSRSHAICQVSVRENSTGRLYGKLSLIDLAGSERGTDTKSHNRQRRMEGADINKSLLALKECIRALDSESVHVPYRASKLTLVLKDSFTRKG-ARTVMIATVSPGASAADHTINTLRYADRVKENKV 690
            TGSGKT+TM GIQ+  T DLF+ ++  P G  L V V+FFEIYGGRCQDLLN RHR  VREDG+GEV I  L+E    D  ALE  +  GNRNRTTHATE ND SSRSHA+CQ+++RE  +GRL GK+SLIDLAGSERG DTKSHNRQRRME A+INKSLLALKECIRALDS   H+PYRASKLTLVLKDSFT K  ARTVMIATV+P AS+ADHTINTLRYADRVKE KV
Sbjct:    2 TGSGKTYTMQGIQEYVTRDLFEAMAAHPRGARLQVSVAFFEIYGGRCQDLLNRRHRLQVREDGQGEVQIVDLQEMPCEDAAALEAYVQRGNRNRTTHATEKNDVSSRSHAVCQIALREVGSGRLQGKISLIDLAGSERGADTKSHNRQRRMESAEINKSLLALKECIRALDSNDTHIPYRASKLTLVLKDSFTNKSSARTVMIATVAPNASSADHTINTLRYADRVKEKKV 232
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BLAST of mRNA_H-paniculata_contig10790.504.1 vs. uniprot
Match: A0A835YJB8_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJB8_9STRA)

HSP 1 Score: 333 bits (854), Expect = 2.650e-107
Identity = 180/246 (73.17%), Postives = 196/246 (79.67%), Query Frame = 1 
Query:    1 TGSGKTFTMVGIQKNATHDLFQQLSRMPSGD------------NLSVHVSFFEIYGGRCQDLLNHRHRCVVREDGKGEVVIAGLEEKEAVDEEALEVLIADGNRNRTTHATESNDQSSRSHAICQVSVRE-NSTGRLYGKLSLIDLAGSERGTDTKSHNRQRRMEGADINKSLLALKECIRALDSESVHVPYRASKLTLVLKDSFTRKGARTVMIATVSPGASAADHTINTLRYADRVKENKVEQF 699
            TGSGKT+TMVGIQ+    DLF+ L+  P                L V+VSFFEIYGGRCQDLLN RHR  VREDG+G+V IAGLEE +A   E LE LI  GNRNRTTHATESND SSRSHAICQ++++E    GRL+GKLSLIDLAGSERG DTKSHNRQRRMEGA+INKSLLALKECIRALDS   HVPYRASKLTLVLKDSFTR+ ARTVMIATVSPGAS ADHT+NTLRYADRVKE KV  F
Sbjct:  153 TGSGKTYTMVGIQRQCAEDLFRALTAAPPXXXXXXXXXXXXXATLEVYVSFFEIYGGRCQDLLNRRHRLDVREDGQGDVHIAGLEEFQAASAEELEQLIDRGNRNRTTHATESNDTSSRSHAICQIALKEAGGGGRLHGKLSLIDLAGSERGADTKSHNRQRRMEGAEINKSLLALKECIRALDSGEAHVPYRASKLTLVLKDSFTRRAARTVMIATVSPGASHADHTLNTLRYADRVKETKVADF 398
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BLAST of mRNA_H-paniculata_contig10790.504.1 vs. uniprot
Match: W7UCQ1_9STRA (Kinesin-like protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7UCQ1_9STRA)

HSP 1 Score: 319 bits (817), Expect = 3.540e-99
Identity = 175/265 (66.04%), Postives = 201/265 (75.85%), Query Frame = 1 
Query:    1 TGSGKTFTMVGIQKNATHDLFQQLSRM------PSGDNLSVHVSFFEIYGGRCQDLLNHRHRCVVREDGKGEVVIAGLEEKEAVDEEALEVLIADGNRNRTTHATESNDQSSRSHAICQVSVRENSTGRLYGKLSLIDLAGSERGTDTKSHNRQRRMEGADINKSLLALKECIRALDSES-VHVPYRASKLTLVLKDSFTRKGARTVMIATVSPGASAADHTINTLRYADRVKENKVEQFKPVQPSMSNSANAGVPSSGXXXXRV 774
            TGSGKTFTM GIQ+    D+F  LS+       P G  L V+VS+FEIYGGRCQDLLNHRH+ +VREDGKG+VVI  L EKEA  EE L  LI +GNRNRTTHATE ND SSRSHAICQV +R+  +G+L+GKLSL+DLAGSERG DTKSH RQRR+E A+INKSLLALKECIRALD+    HVPYRASKLTLVLKD FT++ ARTVMIATVSP AS+ADHT+NTLRYADRVK+ K E F        +S   G+ + G    R 
Sbjct:  228 TGSGKTFTMCGIQQQVVVDVFAHLSQAHATQQAPGG--LGVYVSYFEIYGGRCQDLLNHRHKLLVREDGKGDVVIGELSEKEASSEEELWRLIEEGNRNRTTHATEVNDVSSRSHAICQVLLRDQDSGKLWGKLSLVDLAGSERGADTKSHCRQRRLESAEINKSLLALKECIRALDAGGGTHVPYRASKLTLVLKDCFTKEKARTVMIATVSPNASSADHTLNTLRYADRVKQKKAEDFH--NSGSGSSVGKGLRTEGCGEGRA 488
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BLAST of mRNA_H-paniculata_contig10790.504.1 vs. uniprot
Match: A0A7S0GDD8_9STRA (Kinesin-like protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GDD8_9STRA)

HSP 1 Score: 294 bits (752), Expect = 1.410e-93
Identity = 156/253 (61.66%), Postives = 191/253 (75.49%), Query Frame = 1 
Query:    1 TGSGKTFTMVGIQKNATHDLFQQLSRMPSG----DNLSVHVSFFEIYGGRCQDLLNHRHRCVVREDGKGEVVIAGLEEKEAVDEEALEVLIADGNRNRTTHATESNDQSSRSHAICQVSVRENSTGRLYGKLSLIDLAGSERGTDTKSHNRQRRMEGADINKSLLALKECIRALDSE----SVHVPYRASKLTLVLKDSFTRKGARTVMIATVSPGASAADHTINTLRYADRVKENKVEQFKPVQPSMSNSAN 735
            TGSGKT+TM GIQ  A  DLF  L    +     DN  + VSFFE+YGGR QDLLN+R +  + ED KGE+V+ GLEE EA D   L  LI  GN+NRTTHATE+ND SSRSHA+CQ+ +R+ S+ +L GKLSL+DLAGSERG+DTKSHNRQRR E ++INKSLLALKECIRALDS     S HVPYRASKLTL+LKD FT   A++ MI TVSPGAS+ADHT+N+LRYADR+KE KV+  + +  S+ + ++
Sbjct:   14 TGSGKTYTMGGIQSMAVSDLFSLLESNENASCNSDNTFITVSFFELYGGRIQDLLNNREKLKLLEDAKGEIVVTGLEEFEANDTAELMELIDTGNKNRTTHATEANDTSSRSHAVCQIVLRDKSSSKLRGKLSLVDLAGSERGSDTKSHNRQRRTESSEINKSLLALKECIRALDSNGRGNSTHVPYRASKLTLILKDCFTSNMAKSTMITTVSPGASSADHTLNSLRYADRIKEKKVKPAEKIDSSLKSPSS 266
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BLAST of mRNA_H-paniculata_contig10790.504.1 vs. uniprot
Match: A0A7S3V5B6_9STRA (Kinesin-like protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5B6_9STRA)

HSP 1 Score: 295 bits (755), Expect = 3.520e-92
Identity = 157/238 (65.97%), Postives = 180/238 (75.63%), Query Frame = 1 
Query:    1 TGSGKTFTMVGIQKNATHDLFQQLSRMPSG---DNLSVHVSFFEIYGGRCQDLLNHRHRCVVREDGKGEVVIAGLEEKEAVDEEALEVLIADGNRNRTTHATESNDQSSRSHAICQVSVRENSTGRLYGKLSLIDLAGSERGTDTKSHNRQRRMEGADINKSLLALKECIRALDSESVHVPYRASKLTLVLKDSFTRKGARTVMIATVSPGASAADHTINTLRYADRVKENKVEQFKP 705
            TGSGKT+TM GI+   + D+F  LS    G   DN  V VSFFEIYGGR QDLLN R R  V EDGKGEVV+ GL E EA D + L   I    + RTTHATE+ND SSRSHAICQ+ +RE  +G+L GK+SL+DLAGSERG+DTKSHNRQRR E ++IN SLLALKECIRAL   S HVPYRASKLTL+LKD FT   ART MIATVSPG S+ADHTINTLRY+DR+KE K+ + KP
Sbjct:  184 TGSGKTYTMNGIESMVSEDIFSLLSTNSEGPNLDNTMVLVSFFEIYGGRIQDLLNKRERLKVLEDGKGEVVVTGLREFEANDPQHLLDYIESAQKKRTTHATEANDTSSRSHAICQIMLREKESGKLRGKMSLVDLAGSERGSDTKSHNRQRRTESSEINTSLLALKECIRALGGSSKHVPYRASKLTLILKDCFTSSLARTAMIATVSPGGSSADHTINTLRYSDRIKEKKIPESKP 421
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BLAST of mRNA_H-paniculata_contig10790.504.1 vs. uniprot
Match: A0A7S1BU83_9STRA (Kinesin-like protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BU83_9STRA)

HSP 1 Score: 291 bits (745), Expect = 6.300e-92
Identity = 158/246 (64.23%), Postives = 182/246 (73.98%), Query Frame = 1 
Query:    1 TGSGKTFTMVGIQKNATHDLFQQLSRMPSGDN-----------LSVHVSFFEIYGGRCQDLLNHRHRCVVREDGKGEVVIAGLEEKEAVDEEALEVLIADGNRNRTTHATESNDQSSRSHAICQVSVRENSTGRLYGKLSLIDLAGSERGTDTKSHNRQRRMEGADINKSLLALKECIRALDSES--VHVPYRASKLTLVLKDSFTRKGARTVMIATVSPGASAADHTINTLRYADRVKENKVEQF 699
            TGSGKT TM GIQ     D+F  L      D+            +V VSF+E+YGGRCQDLLN R    + EDGKGEVV+ GLEE EA + E L  L+  GNR RTTHATE+ND SSRSHA+CQ+++R+ + GRL GKLSL+DLAGSERG+DTKSHNRQRR E A+INKSLLALKECIRALD+     HVPYR+SKLTLVLKD FT   ART M+ATVSPGAS+ DHTINTLRYADRVKE K E +
Sbjct:  224 TGSGKTHTMSGIQTMVAEDIFAMLHLHEEDDDDGRNAQCRRSETTVTVSFYELYGGRCQDLLNERRMLKILEDGKGEVVVTGLEEFEAENPEELMCLVEKGNRLRTTHATEANDTSSRSHAVCQIALRDKNNGRLKGKLSLVDLAGSERGSDTKSHNRQRRTESAEINKSLLALKECIRALDNGGGQSHVPYRSSKLTLVLKDCFTSPLARTTMVATVSPGASSCDHTINTLRYADRVKEKKSETY 469
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BLAST of mRNA_H-paniculata_contig10790.504.1 vs. uniprot
Match: A0A7S4R0L9_9STRA (Kinesin-like protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R0L9_9STRA)

HSP 1 Score: 288 bits (738), Expect = 1.640e-89
Identity = 160/240 (66.67%), Postives = 180/240 (75.00%), Query Frame = 1 
Query:    1 TGSGKTFTMVGIQKNATHDLFQQLSRMP--------SGDNLSVHVSFFEIYGGRCQDLLNHRHRCVVREDGKGEVVIAGLEEKEAVDEEALEVLIADGNRNRTTHATESNDQSSRSHAICQVSVRENSTGRLYGKLSLIDLAGSERGTDTKSHNRQRRMEGADINKSLLALKECIRALDSESV--HVPYRASKLTLVLKDSFTRKGARTVMIATVSPGASAADHTINTLRYADRVKENKV 690
            TGSGKTFTM GIQ     DLF  LS           + DN  V VSFFEIYGGR  DLLN+R R  V EDGKGEVV++GLEE E+ D      L+  GN+ RTTH+TE+ND SSRSHAICQ+ +R+ +T RL GKLSL+DLAGSERGTDTKSHNRQRR E ++IN SLLALKECIRALDS     HVPYRASKLTL+LKD FT   ART MIATVSPGAS+ADHT+NTLRY DR+KE KV
Sbjct:  176 TGSGKTFTMNGIQSMVAEDLFHLLSNDDYEYDDSKCTLDNTIVTVSFFEIYGGRIVDLLNNRERLKVLEDGKGEVVVSGLEEFESNDPAEFFALVDAGNKKRTTHSTEANDTSSRSHAICQILLRDKATSRLRGKLSLVDLAGSERGTDTKSHNRQRRTESSEINTSLLALKECIRALDSGKGGRHVPYRASKLTLILKDCFTSNLARTTMIATVSPGASSADHTLNTLRYTDRIKEKKV 415
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BLAST of mRNA_H-paniculata_contig10790.504.1 vs. uniprot
Match: A0A7S1FY43_9STRA (Kinesin-like protein n=8 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FY43_9STRA)

HSP 1 Score: 290 bits (743), Expect = 2.890e-89
Identity = 158/243 (65.02%), Postives = 181/243 (74.49%), Query Frame = 1 
Query:    1 TGSGKTFTMVGIQKNATHDLFQQLSRMPSGDN-----------LSVHVSFFEIYGGRCQDLLNHRHRCVVREDGKGEVVIAGLEEKEAVDEEALEVLIADGNRNRTTHATESNDQSSRSHAICQVSVRENSTGRLYGKLSLIDLAGSERGTDTKSHNRQRRMEGADINKSLLALKECIRALDSES--VHVPYRASKLTLVLKDSFTRKGARTVMIATVSPGASAADHTINTLRYADRVKENKV 690
            TGSGKT TM GIQ     D+F  L      D+            +V VSF+E+YGGRCQDLLN R    + EDGKGEVV+ GLEE EA + E L  L+  GNR RTTHATE+ND SSRSHA+CQ+++R+ + GRL GKLSL+DLAGSERG+DTKSHNRQRR E A+INKSLLALKECIRALD+     HVPYR+SKLTLVLKD FT   ART M+ATVSPGAS+ DHTINTLRYADRVKE KV
Sbjct:  224 TGSGKTHTMSGIQTMVAEDIFAMLHLHEEDDDDGRNAQCRRSETTVTVSFYELYGGRCQDLLNERRMLKILEDGKGEVVVTGLEEFEAENPEELMCLVEKGNRLRTTHATEANDTSSRSHAVCQIALRDKNNGRLKGKLSLVDLAGSERGSDTKSHNRQRRTESAEINKSLLALKECIRALDNGGGQSHVPYRSSKLTLVLKDCFTSPLARTTMVATVSPGASSCDHTINTLRYADRVKEKKV 466
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BLAST of mRNA_H-paniculata_contig10790.504.1 vs. uniprot
Match: A0A7S4N7H4_9STRA (Kinesin-like protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N7H4_9STRA)

HSP 1 Score: 288 bits (737), Expect = 3.290e-89
Identity = 164/274 (59.85%), Postives = 188/274 (68.61%), Query Frame = 1 
Query:    1 TGSGKTFTMVGIQKNATHDLFQQL------SRMPSGDNLSVHVSFFEIYGGRCQDLLNHRHRCVVREDGKGEVVIAGLEEKEAVDEEALEVLIADGNRNRTTHATESNDQSSRSHAICQVSVRENSTGRLYGKLSLIDLAGSERGTDTKSHNRQRRMEGADINKSLLALKECIRALDS---ESVHVPYRASKLTLVLKDSFTRKGARTVMIATVSPGASAADHTINTLRYADRVKENKVEQFKPVQPSMSNSANAGVPSSGXXXXRVSPLDKPP 795
            TGSGKTFTM GIQ     DLF  L      S   + ++ +V V+FFEIYGGR QDLLN R R  + EDGKGEVV+AGLEE  A   +    L+  GN  RTTHATE+ND SSRSHAICQ+ +R+  T RL GKLSL+DLAGSERGTDTKSHNRQRR E ++IN SLLALKECIRALDS    + HVPYRASKLTL+LKD FT K ART MIATVSPGAS+ADHT+NTLRYADR+KE KV         +  +     P+        S    PP
Sbjct:  185 TGSGKTFTMGGIQSMVAADLFDILHHGGGVSNSCTLEDTAVTVTFFEIYGGRIQDLLNERKRLKLLEDGKGEVVVAGLEEFGATTPDEFFSLVDVGNGKRTTHATEANDTSSRSHAICQILLRDKGTSRLRGKLSLVDLAGSERGTDTKSHNRQRRTESSEINTSLLALKECIRALDSGRGSARHVPYRASKLTLILKDCFTSKLARTTMIATVSPGASSADHTVNTLRYADRIKEKKVRDMSVTDQPVVKAPKRRSPTRNPRMQESSSSISPP 458
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10790.504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNA3_ECTSI1.220e-13888.26Kinesin-like protein n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S4D754_HETAK4.550e-10873.16Kinesin-like protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YJB8_9STRA2.650e-10773.17Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
W7UCQ1_9STRA3.540e-9966.04Kinesin-like protein n=3 Tax=Monodopsidaceae TaxID... [more]
A0A7S0GDD8_9STRA1.410e-9361.66Kinesin-like protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S3V5B6_9STRA3.520e-9265.97Kinesin-like protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S1BU83_9STRA6.300e-9264.23Kinesin-like protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S4R0L9_9STRA1.640e-8966.67Kinesin-like protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S1FY43_9STRA2.890e-8965.02Kinesin-like protein n=8 Tax=Corethron hystrix Tax... [more]
A0A7S4N7H4_9STRA3.290e-8959.85Kinesin-like protein n=2 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10790contigH-paniculata_contig10790:493..7019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score405.2
Seed ortholog evalue2.3e-110
Seed eggNOG ortholog2880.D8LNA3
KEGG koko:K10393
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0246@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Exons7
Model size1021
Cds size801
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928782.9879332-UTR-H-paniculata_contig10790:492..5161622928782.9879332-UTR-H-paniculata_contig10790:492..516Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10790 493..516 +
1691480617.9816577-UTR-H-paniculata_contig10790:492..5161691480617.9816577-UTR-H-paniculata_contig10790:492..516Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10790 493..516 +
1622928783.1259317-UTR-H-paniculata_contig10790:6307..64581622928783.1259317-UTR-H-paniculata_contig10790:6307..6458Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10790 6308..6458 +
1691480618.0502677-UTR-H-paniculata_contig10790:6307..64581691480618.0502677-UTR-H-paniculata_contig10790:6307..6458Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10790 6308..6458 +
1622928783.1420617-UTR-H-paniculata_contig10790:6974..70191622928783.1420617-UTR-H-paniculata_contig10790:6974..7019Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10790 6975..7019 +
1691480618.0594215-UTR-H-paniculata_contig10790:6974..70191691480618.0594215-UTR-H-paniculata_contig10790:6974..7019Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10790 6975..7019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928783.0034363-CDS-H-paniculata_contig10790:516..5311622928783.0034363-CDS-H-paniculata_contig10790:516..531Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10790 517..531 +
1691480617.9939811-CDS-H-paniculata_contig10790:516..5311691480617.9939811-CDS-H-paniculata_contig10790:516..531Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10790 517..531 +
1622928783.019142-CDS-H-paniculata_contig10790:903..10251622928783.019142-CDS-H-paniculata_contig10790:903..1025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10790 904..1025 +
1691480618.0041347-CDS-H-paniculata_contig10790:903..10251691480618.0041347-CDS-H-paniculata_contig10790:903..1025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10790 904..1025 +
1622928783.0455608-CDS-H-paniculata_contig10790:2170..23291622928783.0455608-CDS-H-paniculata_contig10790:2170..2329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10790 2171..2329 +
1691480618.0135365-CDS-H-paniculata_contig10790:2170..23291691480618.0135365-CDS-H-paniculata_contig10790:2170..2329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10790 2171..2329 +
1622928783.0683568-CDS-H-paniculata_contig10790:3872..40441622928783.0683568-CDS-H-paniculata_contig10790:3872..4044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10790 3873..4044 +
1691480618.022702-CDS-H-paniculata_contig10790:3872..40441691480618.022702-CDS-H-paniculata_contig10790:3872..4044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10790 3873..4044 +
1622928783.0951855-CDS-H-paniculata_contig10790:5376..55551622928783.0951855-CDS-H-paniculata_contig10790:5376..5555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10790 5377..5555 +
1691480618.0323532-CDS-H-paniculata_contig10790:5376..55551691480618.0323532-CDS-H-paniculata_contig10790:5376..5555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10790 5377..5555 +
1622928783.1110423-CDS-H-paniculata_contig10790:6153..63071622928783.1110423-CDS-H-paniculata_contig10790:6153..6307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10790 6154..6307 +
1691480618.0421214-CDS-H-paniculata_contig10790:6153..63071691480618.0421214-CDS-H-paniculata_contig10790:6153..6307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10790 6154..6307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10790.504.1prot_H-paniculata_contig10790.504.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10790 517..6307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10790.504.1

>prot_H-paniculata_contig10790.504.1 ID=prot_H-paniculata_contig10790.504.1|Name=mRNA_H-paniculata_contig10790.504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=267bp
MVGIQKNATHDLFQQLSRMPSGDNLSVHVSFFEIYGGRCQDLLNHRHRCV
VREDGKGEVVIAGLEEKEAVDEEALEVLIADGNRNRTTHATESNDQSSRS
HAICQVSVRENSTGRLYGKLSLIDLAGSERGTDTKSHNRQRRMEGADINK
SLLALKECIRALDSESVHVPYRASKLTLVLKDSFTRKGARTVMIATVSPG
ASAADHTINTLRYADRVKENKVEQFKPVQPSMSNSANAGVPSSGGGGGRV
SPLDKPPPPPLHLSDS*
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mRNA from alignment at H-paniculata_contig10790:493..7019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10790.504.1 ID=mRNA_H-paniculata_contig10790.504.1|Name=mRNA_H-paniculata_contig10790.504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6527bp|location=Sequence derived from alignment at H-paniculata_contig10790:493..7019+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGGGTCTGGCAAAACGTTCACCATGGTTGGTATTCAGGTGAGATGCGC
GTAGCACATGTGTATGTATGATGGCAGAAGGTATAAATACCGCAAACGTT
GACGTGTGGCTCGTACACTGTTGCAACCTCATTTCGCGGTGCTGTTGTCT
TCAGTCTTGAGGTTATATATATATATATAGCTCTGCAGTGATCGTAAGAT
GGGTATTTTCGGAACAGTTTTTGAACCCCTGGCTCCAGTGTATAACTTTT
GAACTGAAAAATAGGAATGGGTGTGTTCAGGTTTCCGCTGCACGTTTTTG
TTTGGTCGACTTTCCAGTTGTCGTTACGGCACAAGACTAATGCAATTGCC
GCGGTCAATGCTACTTAGTTTGATTTTTGATCCGCCCCCCCCTCACCCTC
TTCTCTCGCAGAAAAATGCCACCCACGACCTGTTCCAGCAGTTGTCACGG
ATGCCAAGTGGGGACAATCTCAGCGTTCACGTGAGCTTTTTTGAGATCTA
CGGGGGACGCTGCCAAGACTTACTTAACCATAGGTAACAGTGAAATACAT
ATATGACGTAAATCCCTATTTTTTGTTTTTTTTTCTGTGTCCTTACCTAT
GCTATTTAATTGGACTAGTAAGGTGACGATGGTTGGTCCTGAACGGTGTT
TTTTACAACTCTGTACTCGAGTAGATTTTACGCAACAAAAGTATGGACTC
AATACCGCAGAGAGGTGTTGTGTCGAAGTGAGCTTCATGTAAATCTCTCG
TTATAGTGGATTTTTTTAGTACACAGGCTTTGTACTCGAGCGCGTCCGCA
GCAAACGGTTCAATCTTTTCGAGAAGGCAAACTACGTGTACATTATTGAA
CCATGTTTTTCAAGTACAGTGAGATCGAACCCCCTTATATAACGAGGGAC
CCAGGATCCATACTCGAAGCCACAGGTGGTTGATGCATGCACAAGGTAGT
CCACCCCAAGATCCACTCTTCAAGAAAAAATTCGAATATTTTTCGTTTTT
CCTTGCGCCCAGGGGTATAAAGGATCGGTCTGTTATAGTTTTTGTTTTTG
TTTTTATCCTTGAAAGGAGAGGAGGAAACCTTTGCCCGACACTTGCCCCG
ATATTCGGGTTCGTGTATCGGTTGCCCGAAGGTCCGACTAGACAACCTTG
CAGCTGTCATGTGGGGAAGGCACCTTGAGCGTTCGCCCGCCCTTTGCTCA
GGGTAGTGTGGGACCCGCACCCACTAAAACCCTCTATGTTGTTTCCCTCA
ACTTGGAGCAGTACACGCGCCGCCCTGCTCAGTGAGCTTCGGCCCTAGCG
GTCTGTTATAGTGTGTGAGCATGATAGTACTTCGCTTCAAGGTTCAGCAT
GATGAGCACGTTTATCCTATGTGTCTTGGCCCATGTACGATTGCTCCGAA
TAATAAATGGTGAAATAAATTTTAGAGATGGTCAACTAACACTTGTTCTT
CTTCTCTGCGCCCGCTGATTCCGAACCTGATGAATTATTTTTTAACGCAA
GTGTCTTCTTCCACACAATTATGTTATAAACCGATTCGCGGATGGGTGTG
TGGGAGTTTTTTTATTGTGCCGCCCGGTTTGCCGTCGATCATGCACGCGC
GAATATATACATTTTTTTTTTTTTTTTTCGATCATGTGAACAATGCTCGT
TGTGATTAATTATTTAATTGATGTATAGGCACCGCTGCGTGGTGAGGGAA
GACGGGAAGGGGGAAGTGGTGATCGCGGGTCTTGAAGAGAAGGAAGCGGT
GGACGAGGAGGCGCTGGAGGTGCTCATTGCCGATGGAAATCGCAACAGAA
CAACGCATGCCACGGAGAGCAACGACCAGAGCTCCAGGTGCCTACCGTAG
TTCTATCATGGGAGGTGATATATTTAGGAGCGCGCGGGCGTGCGAGGGGG
GCGGGGTTGCACACTCCGTACTATCAATAATGTTAAAAAATATATTTTTG
CTAATTTGTCCTTACCAGGATTGGAGCCCGGCAGGAGATAGCTCCGTAGT
AGCTCTTGTGTATTCATGTTGAATTTTTTTTAAGTGATCTTAAACCTAGG
TTGTGTCCATTTATCTGTAACATTATATCAATGAGAGATACTTCTGAACC
ATTAATAGTATTGAAAATTATGTTATTAGTTTGTTGTCACCGGGGGGGGG
GGGTGTATGTACACTGAGATGGTGTCATATCCATCATGCCTTCAACGATG
GGTTCATCCACTCTTTGCACAAGTAAAAGGTTGACGAAAATGTGTGCTGA
CTGTATGTACTGTACGGGTGCCTCGCAAATGCTACAAGGAGGGGAAAAGA
GACACGCAATTATTCGCCAATTGTTTTGAAGTCATGGATGAAATATTCCG
GGGGTGATTTTTGTGGTGAATCTGTGGCAACCTGTTATTTTCTTAATGCC
AAGTACCAAATAGTTTGTGCGAAATTAGATTTAAAAAAAAAGCCGTGGTC
TTGAGTTCAAGAGGTGAAGATCTGCAATAGAGGTACCGTCGCGGAGACTA
CAGCGTGATTTTGACTCGCAGATTGATTCTCTCGCTCTCCCGCTCTCTCG
GGGTACCCGCCAACCAGTGCGAGCTTGAATTTGATGCTGATTTAATGGAG
GTTTTGCTTGAAAATCGGTGGAGAAATGTCTTTGATTTCAAGGAACGAAA
ACGGCGAATTCGGTAGTTGGAGTACATGTACCGTGGAGCGCTGTCAGAAC
GCCCCCACGGGGTTGATTTGTTTTTAGGTCTGATGTTTTGGAAAACAAAG
TCCATGTGCCTTGGAAAAGAGGAGTCCATCGATAGACATATGTCGACAAG
ATAGATGGCTTTATGACAGAACTTTCGGTGTCACTAGCCTAGCAGGGTAG
GTAGTTTTCAAAAAAAAAATGGTCCTGAATAAGAGAGCTATTTTTGTTTC
AAGTACGAACGAGCATCGTGTGCTGTTTAATATCTTGACGTGTGTGATAT
GGTGGAAATTTGTCGATTCAGTTAATCGATCAGTGAATGCACGCACCCCG
CACTTGGTAAAGATGAGAGAAGAGACCAAACGATTCTGTTTCGAGTGCTT
TTGCGGAGACGTGCTGCTTTCTCATTTTTTTTTTTAAGTCCTCGTACCGT
ATGTATCACCAGAGTCATCAGCTGCCGAGATAGCGATCAATCTATTCTTT
TATCCATGCGATCATGAGATACATTTGTCGTTATCCATGAATTGCTGCGT
GCGAAATATGTGTCGTTTTTAATCCAAATGAACCCCAAACAGTAAACGAT
ACGAGAGGTTTGTGGTTACAGGCTAAAACGAGATATACCTGTTCAATATA
AGTCATTATCCATGGAATGTAATCTCAATCTGTCGTCACGAAAAGAAGCG
AAACGATACGATACGATACGAAAACAATAGGTCGCACGCGATCTGTCAAG
TTTCCGTGAGGGAGAACTCCACCGGACGGTTGTACGGCAAGCTGAGTCTG
ATCGACCTCGCCGGGAGTGAGCGGGGCACCGATACCAAGAGCCACAACCG
ACAGCGGCGAATGGAGGGAGCCGACATCAACAAGTCTCTTCTCGCTCTCA
AAGTAAGTCCTCTTGCATCAAGTTTTTTCGTGTATGCATCATCTATCTTC
TGTCCGATAAGTCTGTGGGATTGGGACTGTAACTTTTGTAGAAGACTTGC
AATATAAAAAACGGTTGCTCGCGTTGGATTCCTCGTCGGTGTTTTTTTTG
GGTGTAGGGCGACCGTGTGGAGCATAGTTAACGATGGCCATCATGTCTGT
GGACAGGTTGCGATGGACCTTTCGAAGGGAAAAACCAAGAAAGTGCCAAA
ATAACTGCACTTGGCGTTCGCAATATGTCTCCCCGACCACGCCTCCAAAC
GAACGCCGGGATATTTTTTATGAACGAACCACGTCTCAGGGTTCGACGAA
GCCCATTTTTTTTTTTTTTGTAGATTCTGAGCTGCAGCGCGCAACTCAAC
GCCGAAATAGTTTGTGTGTTGGCTTCAAGAGGCGAAAATTTAGCAAATTG
CCCCCTATTTTTTTATGCTCTGTTTGAACGTAATACACATATATGAACGC
GATCACTGCGATAGCTCATATGAACGTGCAGGCTCTTTGTGTTCGATCGA
CGGTACTGAAGATCCCGAGAAATAATACGCCGGAGTCGGACAAAAAAAGG
CATTTACTGGCTGTAGGGGTTTTGGCGAGAAACATAAGCGAAGTTCAGGA
AACGGGCCAATGTTTGAGCCTTTGTGACTGACGCCCCAACTACATATAAT
ATGTGACCAACACCTGGCATAGTTTTTTTTTTTTTTTTGTGAATGCTGAG
AGTCCTAGCTTTCAGCCGGATCCACCATCAACCAACATATATCGGAAATG
CTTGTGCTTTGCTCTCCAAAACAAATGCCCCCACAGACTTGTCGGACAGA
GGGAGTATCTATCTATCTATCTATCTATCCATATTTGAAAAGGCCCCGCT
TTCTTGCTGATTTTCAGTATTGCCGGAGAGGATAAAATGTGATAACTGAC
TGTCGCCCTGTTGTTTATTCTATGTAGGGTGCAACACGTCAAGTTAAGCT
AGTTAAGCCGTTGAGCCCTTACTAATTTGTCTTGGACATGATAGGTATAC
CTGACCTCTCACCGTTTTTGCTCAGATGTGGATGTACATGCATATCATGT
ACGTATCGTATCCAGGTGGCAGCCAAATCAATCAAACTAACGTGGAGGGG
CAGTACACTCAACGTGTATTCTTATTATCGATGCGCTCTTGTCTATGTGT
ATGCTTGTTTGCACGTTTTAGTTGATAATGATATACAAGTCAAACGTTAC
GTGTGCAGAATTTTTTACTTGAAATGTATATATGTATCTATATATATATA
TATATATATATACATATATCCCTACATGCGGCAGGAGTGCATTCGCGCCT
TGGACAGCGAGAGCGTCCACGTGCCGTACCGAGCTTCCAAGCTAACCCTG
GTGCTGAAGGATAGCTTCACACGAAAGGGCGCCCGCACCGTGATGATCGC
CACGGTCTCTCCCGGTGCATCGGCGGCCGACCACACCATCAACACCCTGC
GCTACGCGGACAGGTGAGAGGAGAACATCCAACAGTAGAGAAAAAAAAAA
AATGGTGCATCACTAGATGATGTTGAAATTGTGAGGAATAAATCGAATAA
AAATCGCGCCGATTATCATGGGCCCGAAAAAAAAAGTGAAGGTTTATGCA
GTGACTAAGTTTATGATGATCAATCGGCATAAAAAAAATATATATATATT
CGTAAATTGTGAAAAAACGCGAACAGGTTTATTGAACATATTGCGGTCTA
TTGGTGTACACGCACCATGTTTTGTTTTGTTTTATGTGTTCGCTCACGGA
TCATGCGTCTAATATTTTCTTCAAGTGGAGGCTAATTTTGTATTGGTTGC
CGGCGTCTGGCTTTCCAAATGTAAGCTTGAAAATCGTATCTAAAAAGTCG
CGTCTGTCCACCACGCGTTTTTTTCCCGTGCCCACTATAAGGATAGCAAC
ACACGCAAAACATGCACGCACGCACATCTGTATCACCCCTTCTTGTTGAT
ATATTTTTGCTGATTAGATTAGTATACAACATAGGTTTGAATATTTGTCT
CGCCCCCCCCCCCCCACACACCTCCCTTCGACGCTCCTCCTCCGAAAAAA
ACGCCGGAAAGGGTGAAAGAAAACAAGGTAGAGCAGTTCAAACCCGTGCA
ACCAAGCATGAGTAATAGCGCCAACGCGGGTGTTCCTAGTAGCGGCGGCG
GCGGAGGTAGAGTATCCCCGCTTGATAAGCCCCCCCCCCCCCCCCTCCAC
CTCTCCGACTCCTGACTCCAACCGCGGGTCGGGGATGGGGGCCGGGGGGG
GGACGGCGGGCGGTGGGGTGGTGTCGCAGCTGAAGACCGTAGAGCGGCGG
TCGATGATGGGGAGCGGGGGCGGGGGTGGGGCTGGGAGCGCGGCAGGAGT
GGCGACAGGCAGTGGGGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAACAGCAACAGCTACGGCATTCGTCAGCGGCGTCGGAGTTCAAG
GCTGGGGCTAAGGGTGAGTGGGAGTGAATGGATGAAGGATGGAGGGCAGA
GGGTGGGTAGCGAAGGATCGGGTTTTGTGCTGTGGGTGAAGGTGAAGGTG
AAGGTGAAGTATGGGGTATCTCGTGGTCGACCCTTCTGGTTCGTGGCAGT
ACTAGAGGTACTGGTACGCCAACGGCACTGCACTCCTGTTCGTGTTCGTG
TTCCTGTTCGTGTTCGTGTTCGTGTTCCGGTTTCTACACCCGTAGCCGTA
CCCGAACTTGTACCTGTCGCAGCAGCTATGTGCGTCCTAAAAATGAAGGC
AGGATACAATTTTTGGTTTCCGGTTAAACGATTTACCTCGAGCATCCGAA
TTTCCTTTCTGCAAACGTCGTGCTCATTGACATTGCAGCGGTGAACGGGA
CCGGGGAGCACGATCGCTTCGATTCCTCCCAGCCAGCCCAGCCTCCGGCA
AGTGGGAAGGCGGGTGTTGGTGCTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig10790:493..7019+

>mRNA_H-paniculata_contig10790.504.1 ID=mRNA_H-paniculata_contig10790.504.1|Name=mRNA_H-paniculata_contig10790.504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1602bp|location=Sequence derived from alignment at H-paniculata_contig10790:493..7019+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGGTATTCAGATGGTTGGTATTCAGAAAAATGCCACCCACGACCT
GTTCCAGCAGTTGTCACGGATGCCAAGTGGGGACAATCTCAGCGTTCACG
TGAGCTTTTTTGAGATCTACGGGGGACGCTGCCAAGACTTACTTAACCAT
AGAAAAATGCCACCCACGACCTGTTCCAGCAGTTGTCACGGATGCCAAGT
GGGGACAATCTCAGCGTTCACGTGAGCTTTTTTGAGATCTACGGGGGACG
CTGCCAAGACTTACTTAACCATAGGCACCGCTGCGTGGTGAGGGAAGACG
GGAAGGGGGAAGTGGTGATCGCGGGTCTTGAAGAGAAGGAAGCGGTGGAC
GAGGAGGCGCTGGAGGTGCTCATTGCCGATGGAAATCGCAACAGAACAAC
GCATGCCACGGAGAGCAACGACCAGAGCTCCAGGCACCGCTGCGTGGTGA
GGGAAGACGGGAAGGGGGAAGTGGTGATCGCGGGTCTTGAAGAGAAGGAA
GCGGTGGACGAGGAGGCGCTGGAGGTGCTCATTGCCGATGGAAATCGCAA
CAGAACAACGCATGCCACGGAGAGCAACGACCAGAGCTCCAGGTCGCACG
CGATCTGTCAAGTTTCCGTGAGGGAGAACTCCACCGGACGGTTGTACGGC
AAGCTGAGTCTGATCGACCTCGCCGGGAGTGAGCGGGGCACCGATACCAA
GAGCCACAACCGACAGCGGCGAATGGAGGGAGCCGACATCAACAAGTCTC
TTCTCGCTCTCAAAGTCGCACGCGATCTGTCAAGTTTCCGTGAGGGAGAA
CTCCACCGGACGGTTGTACGGCAAGCTGAGTCTGATCGACCTCGCCGGGA
GTGAGCGGGGCACCGATACCAAGAGCCACAACCGACAGCGGCGAATGGAG
GGAGCCGACATCAACAAGTCTCTTCTCGCTCTCAAAGAGTGCATTCGCGC
CTTGGACAGCGAGAGCGTCCACGTGCCGTACCGAGCTTCCAAGCTAACCC
TGGTGCTGAAGGATAGCTTCACACGAAAGGGCGCCCGCACCGTGATGATC
GCCACGGTCTCTCCCGGTGCATCGGCGGCCGACCACACCATCAACACCCT
GCGCTACGCGGACAGGAGTGCATTCGCGCCTTGGACAGCGAGAGCGTCCA
CGTGCCGTACCGAGCTTCCAAGCTAACCCTGGTGCTGAAGGATAGCTTCA
CACGAAAGGGCGCCCGCACCGTGATGATCGCCACGGTCTCTCCCGGTGCA
TCGGCGGCCGACCACACCATCAACACCCTGCGCTACGCGGACAGGGTGAA
AGAAAACAAGGTAGAGCAGTTCAAACCCGTGCAACCAAGCATGAGTAATA
GCGCCAACGCGGGTGTTCCTAGTAGCGGCGGCGGCGGAGGTAGAGTATCC
CCGCTTGATAAGCCCCCCCCCCCCCCCCTCCACCTCTCCGACTCCTGAGG
TGAAAGAAAACAAGGTAGAGCAGTTCAAACCCGTGCAACCAAGCATGAGT
AATAGCGCCAACGCGGGTGTTCCTAGTAGCGGCGGCGGCGGAGGTAGAGT
ATCCCCGCTTGATAAGCCCCCCCCCCCCCCCCTCCACCTCTCCGACTCCT
GA
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