mRNA_H-paniculata_contig1079.502.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1079.502.1
Unique NamemRNA_H-paniculata_contig1079.502.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1079.502.1 vs. uniprot
Match: A0A6A3RLV1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RLV1_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.860e-10
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 3 
Query:   69 PPTQGRFSTAHHTPSVQHTD*GVDRYTMPCLTYFNFPARAEATRLAFSVGDVEFEDKRISFEEFADVVSKTPFAQVPILEV 311
            P  +  +S  H+TP ++             LTYF  P RAE  RLAF +G ++FED+R+SF+EFA+V S+ PF Q+P+LEV
Sbjct:  199 PKVKEWYSLPHNTPKLK-------------LTYFPLPGRAEPIRLAFYIGGIDFEDERLSFDEFAEVKSRLPFNQLPMLEV 266
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BLAST of mRNA_H-paniculata_contig1079.502.1 vs. uniprot
Match: A0A2P4WXS9_9STRA (Glutathione S-transferase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WXS9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.950e-9
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 3 
Query:  159 LTYFNFPARAEATRLAFSVGDVEFEDKRISFEEFADVVSKTPFAQVPILEVAKYYASRMIE*LAY 353
            LTYF  P RAE  RLAF +G +EFED+R+SFEE+  V S+ PF Q+PILEV     S+ +  L Y
Sbjct:  216 LTYFPIPGRAEPIRLAFFIGGIEFEDERLSFEEYEKVKSELPFNQLPILEVNGEPVSQSLAILRY 280
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BLAST of mRNA_H-paniculata_contig1079.502.1 vs. uniprot
Match: A0A2P4XQ43_9STRA (Glutathione S-transferase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XQ43_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.420e-9
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 3 
Query:  159 LTYFNFPARAEATRLAFSVGDVEFEDKRISFEEFADVVSKTPFAQVPILEVAKYYASRMIE*LAY 353
            LTYF  P RAE  RLAF +G +EFED+R+SFEE+  V S+ PF Q+PILEV     S+ +  L Y
Sbjct:   96 LTYFPIPGRAEPIRLAFFIGGIEFEDERLSFEEYEKVKSELPFNQLPILEVNGEPISQSLAILRY 160
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BLAST of mRNA_H-paniculata_contig1079.502.1 vs. uniprot
Match: A0A6A3JH87_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3JH87_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 8.860e-9
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 3 
Query:  159 LTYFNFPARAEATRLAFSVGDVEFEDKRISFEEFADVVSKTPFAQVPILEV 311
            L+YF F  RAEA RLAF VG V FEDKR+S E+FAD+    P  QVP LEV
Sbjct:    9 LSYFGFAGRAEAARLAFYVGGVPFEDKRLSHEQFADIKPSLPLGQVPALEV 59
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BLAST of mRNA_H-paniculata_contig1079.502.1 vs. uniprot
Match: G4YFY5_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YFY5_PHYSP)

HSP 1 Score: 65.5 bits (158), Expect = 3.610e-8
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 3 
Query:  159 LTYFNFPARAEATRLAFSVGDVEFEDKRISFEEFADVVSKTPFAQVPILEVAKYYASRMIE*LAY 353
            L YF    RAE  RLAF +G VEFEDKR+SF+EF  V S+ PF Q+P+LEV     S+ +  L Y
Sbjct:  216 LMYFPLQGRAEPIRLAFFIGGVEFEDKRLSFDEFEKVKSELPFNQLPVLEVDGEAISQSLAILRY 280
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BLAST of mRNA_H-paniculata_contig1079.502.1 vs. uniprot
Match: A0A484DXZ4_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DXZ4_BRELC)

HSP 1 Score: 63.9 bits (154), Expect = 1.160e-7
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 3 
Query:  159 LTYFNFPARAEATRLAFSVGDVEFEDKRISFEEFADVVSKTPFAQVPILEV 311
            LTYFN    AEA+RLAF +G+V FEDKR+S  EFA V    P  QVP+LEV
Sbjct:    9 LTYFNIAGAAEASRLAFYIGNVPFEDKRLSKAEFASVKETLPLGQVPVLEV 59
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BLAST of mRNA_H-paniculata_contig1079.502.1 vs. uniprot
Match: A0A329SB02_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SB02_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.550e-7
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 3 
Query:  159 LTYFNFPARAEATRLAFSVGDVEFEDKRISFEEFADVVSKTPFAQVPILEVAKYYASRMIE*LAY 353
            LTYF    RAE  RLAF +G ++FED R+SF+EF  V S+ PF Q+P+LEV     S+ +  L Y
Sbjct:  217 LTYFPVAGRAEPIRLAFFIGGIDFEDVRLSFDEFEKVKSELPFNQLPVLEVDGESVSQSLAILRY 281
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BLAST of mRNA_H-paniculata_contig1079.502.1 vs. uniprot
Match: D0MZP7_PHYIT (Glutathione S-transferase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MZP7_PHYIT)

HSP 1 Score: 62.8 bits (151), Expect = 2.760e-7
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 3 
Query:  159 LTYFNFPARAEATRLAFSVGDVEFEDKRISFEEFADVVSKTPFAQVPILEVAKYYASRMIE*LAY 353
            LTYF  P RAE  RLAF +G ++FED RIS +E+  V S  PF Q+P+LEV     S+ +  L Y
Sbjct:  217 LTYFPVPGRAEPIRLAFFIGGIDFEDVRISLDEYEKVKSDLPFKQLPVLEVDGESFSQSLAILRY 281
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BLAST of mRNA_H-paniculata_contig1079.502.1 vs. uniprot
Match: A0A8K1CB83_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CB83_PYTOL)

HSP 1 Score: 62.8 bits (151), Expect = 2.780e-7
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 3 
Query:  159 LTYFNFPARAEATRLAFSVGDVEFEDKRISFEEFADVVSKTPFAQVPILEV 311
            LTYFN  ARAE+ RLAF +G+V FED R+SF+EF  +    P+ Q+P+LEV
Sbjct:    9 LTYFNGAARAESIRLAFYIGNVPFEDVRLSFQEFGALKETFPYGQLPVLEV 59
[Close]
BLAST of mRNA_H-paniculata_contig1079.502.1 vs. uniprot
Match: A0A8K1FG94_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FG94_PYTOL)

HSP 1 Score: 62.8 bits (151), Expect = 2.780e-7
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 3 
Query:  159 LTYFNFPARAEATRLAFSVGDVEFEDKRISFEEFADVVSKTPFAQVPILEV 311
            LTYFN  ARAE+ RLAF +G+V FED R+SF+EF  +    P+ Q+P+LEV
Sbjct:    9 LTYFNGAARAESIRLAFYIGNVPFEDVRLSFQEFGALKETFPYGQLPVLEV 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1079.502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3RLV1_9STRA1.860e-1044.44Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A2P4WXS9_9STRA1.950e-953.85Glutathione S-transferase n=1 Tax=Phytophthora pal... [more]
A0A2P4XQ43_9STRA3.420e-953.85Glutathione S-transferase (Fragment) n=1 Tax=Phyto... [more]
A0A6A3JH87_9STRA8.860e-962.75Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
G4YFY5_PHYSP3.610e-852.31Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A484DXZ4_BRELC1.160e-760.78Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A329SB02_9STRA1.550e-749.23Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
D0MZP7_PHYIT2.760e-749.23Glutathione S-transferase, putative n=2 Tax=Phytop... [more]
A0A8K1CB83_PYTOL2.780e-756.86Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8K1FG94_PYTOL2.780e-756.86Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1079contigH-paniculata_contig1079:1297..3527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue3.1e-08
Seed eggNOG ortholog67593.Physo133628
KEGG rclassRC00004,RC00069,RC00672,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K04097
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR02266,R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00590,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00590,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0010033,GO:0014070,GO:0042221,GO:0042493,GO:0045472,GO:0046677,GO:0050896,GO:0097327,GO:1901654,GO:1901700,GO:1904643
EggNOG free text desc.Glutathione S-transferase, C-terminal domain
EggNOG OGs3QDNM@4776,KOG1695@1,KOG1695@2759
EC2.5.1.18,5.3.99.2
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Exons4
Model size1015
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1079.502.1prot_H-paniculata_contig1079.502.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1079 1755..2846 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928782.5755-UTR-H-paniculata_contig1079:1296..14281622928782.5755-UTR-H-paniculata_contig1079:1296..1428Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1079 1297..1428 +
1691480617.8367705-UTR-H-paniculata_contig1079:1296..14281691480617.8367705-UTR-H-paniculata_contig1079:1296..1428Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1079 1297..1428 +
1622928782.588396-UTR-H-paniculata_contig1079:1737..17541622928782.588396-UTR-H-paniculata_contig1079:1737..1754Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1079 1738..1754 +
1691480617.858264-UTR-H-paniculata_contig1079:1737..17541691480617.858264-UTR-H-paniculata_contig1079:1737..1754Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1079 1738..1754 +
1622928782.6394904-UTR-H-paniculata_contig1079:2846..29391622928782.6394904-UTR-H-paniculata_contig1079:2846..2939Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1079 2847..2939 +
1691480617.8822546-UTR-H-paniculata_contig1079:2846..29391691480617.8822546-UTR-H-paniculata_contig1079:2846..2939Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1079 2847..2939 +
1622928782.6646948-UTR-H-paniculata_contig1079:2949..35271622928782.6646948-UTR-H-paniculata_contig1079:2949..3527Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1079 2950..3527 +
1691480617.889672-UTR-H-paniculata_contig1079:2949..35271691480617.889672-UTR-H-paniculata_contig1079:2949..3527Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1079 2950..3527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928782.6019604-CDS-H-paniculata_contig1079:1754..19131622928782.6019604-CDS-H-paniculata_contig1079:1754..1913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1079 1755..1913 +
1691480617.8675885-CDS-H-paniculata_contig1079:1754..19131691480617.8675885-CDS-H-paniculata_contig1079:1754..1913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1079 1755..1913 +
1622928782.6237137-CDS-H-paniculata_contig1079:2810..28461622928782.6237137-CDS-H-paniculata_contig1079:2810..2846Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1079 2811..2846 +
1691480617.8749726-CDS-H-paniculata_contig1079:2810..28461691480617.8749726-CDS-H-paniculata_contig1079:2810..2846Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1079 2811..2846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1079.502.1

>prot_H-paniculata_contig1079.502.1 ID=prot_H-paniculata_contig1079.502.1|Name=mRNA_H-paniculata_contig1079.502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MPCLTYFNFPARAEATRLAFSVGDVEFEDKRISFEEFADVVSKTPFAQVP
ILEVAKYYASRMIE*
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mRNA from alignment at H-paniculata_contig1079:1297..3527+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1079.502.1 ID=mRNA_H-paniculata_contig1079.502.1|Name=mRNA_H-paniculata_contig1079.502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2231bp|location=Sequence derived from alignment at H-paniculata_contig1079:1297..3527+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTCACGCGCCCCTCCTGTCGACACTCTTCCCATCTGCATTATATCAAA
GCAGCATCCAGCTACCTTCCACCAACGCAGGGGAGATTTAGCACAGCCCA
CCATACACCGTCAGTCCAGCATACAGACTGAGGTCAGGGTAGACTGTTGA
TCGATTGGGCGTGCTATTTGGACGCAGGTTTGTGTCTTAAGATACCGCGT
GAGCTTAAATAGCTGTGTTTCCGCAGCGTTGTACCGCACGATAGCATCTA
TACTGCACTTTACTCTATAGCCCGTACTAGCGCTGTGTATTCCGCGTACG
TCGCTCGAACCACTTCGCCGTAAAACAGAGTACACGGAGCAAAACATCAT
AGCCACCATGAGGTAGAATACGGTCGCTCCCGGTTTTTACACTGAAAATA
CATCCTGTGCCCCTGTCCCCCTATTTTGCAATTTTTTGCAGGAGTAGACC
GATACACAATGCCCTGCCTTACCTACTTCAATTTCCCCGCTCGCGCCGAA
GCGACTCGGCTGGCCTTCTCCGTTGGTGACGTGGAGTTCGAAGACAAGCG
CATTTCTTTCGAAGAGTTTGCGGACGTGGTGTCGAAGACACCGTTTGCTC
AAGTGCCAATCCTCGAGGTATGATAGCACTTGGCCATACTGTCCTCAGTG
CACAGCGGCTTCCCTTGATGCTCTTTCTCTCAGCGGTCTCTCTTGATACT
ACTCGCCCTCATTCGCAACTTTGAACCCAGCTTAGGGTCACATTGCAAAT
TCCAGACGGCATGGATAGCGCAAATGCACGCAGGTAACGCTTTTGAAGCA
CGAAATCATAGGTGCAGTACTCCTACATACAGTATAGTAGTCCCAAAGTA
ATACACGGGCCGCAATTGTTCGTTCTAATTTGTCTGCCAAGAAAATATCC
AAGCTTGAAGTTTGGACGAGGTTCGGCTGATATTTGAAGACTTCGTTTAT
TTGTTGGAATCTGTACTCCAGACTACACCTCTAAATTTGTCATTTGAACT
ACGATGTGTCTATCCATGTTTTGTATGCACATATGTTGCTTGCAAATATC
GTCACCAAACTTGGCAGGTATAACGTTCAGGGAGGGATGGAGAGAGAGAG
AGGAGGCCGAACCTACAACTTTCGTTGTGTATAGTTCCGCCTCCATCGTT
GTATTGCTGTCGACGAAGTTTATATTATCGTTGACGGTTTCGGGTAGGAT
TACACACAAAGTTGGCTTGAGTTACGTCACAAGATTTCCATGTCGCCGTC
GCATATCAGATTCACGTAAAGAATAAAACGACTTCTGCTTATGAACTCCT
GGTACCAGGTAATAGTGAAGCAGGTATTTCGAGATCATATTTTCTTATCA
ATTTTACATAGCCACCCCACACCGTTTGTCCTTGTGATTTGTTCAATGGT
CGAAAAGCACATTGAATAATGTTAGTCGATCCGATGTCAAGTACCTCCCA
TGCCACTCACTGATCATCTGCCTTCGAATACTGTGACTTCTCTGCTAATT
ATCCGTGACTGCAGGTGGCCAAGTACTATGCCTCCAGAATGATCGAATAA
CTGGCATACAGACGGCGAGATATGGGGTGTCCGTTTGGCGCAAGATAGCG
GCGCGCTACTGCGCACCCGTTTGCTTGTGACCTTGTTGCAGCAGCAAGAA
TAGTATTCTTGCTTTGACGGATTACGTGTTGTGTGTGTTGCTGCTGCTAC
TGCACCGGTAACTATGCCAAGGTGCTTGTAGGGTATATTCTTTCGTGTGT
TGTGCCAAATGTAAGCGATGAACAACTCGTTGTGTGCAGCGGCTGCGGGT
GCGGGACATCATCATGTGTGCAATCAGTACTCTGTGTCACAAACTGTGGA
GGCATGTATACCGATATTGTTCAAGTCAGCATCAACCAACGGGGAAATCT
AGTGTCGGTTCGTGGTGGCGTATTGAAGCCTCATGATATATCACGTGAGT
AATCGAGCTTGCTCTTAAATAGGCACCTGTACACAGCTCTTCCAGTTCAG
TTGTAGACGGCCATGTTATGCGAGCCCTTGGAAACGAGGGGGCGGGGGAA
GGGGTGATTGAAAATCCACGAGCAGAAAGCGGTCGAATCAATCGAGTGTG
GTTTTAGTCTACATGGGGTGCAGTACATGGGCCTCCGCTGATATGATAGA
TAGGTACCAGTAAGTAGGTTTAGGGTGTGGAGTGGGGATGGAGCTGATAT
GTACTGGGTGCTTCAAAACAGAGAATTATGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1079:1297..3527+

>mRNA_H-paniculata_contig1079.502.1 ID=mRNA_H-paniculata_contig1079.502.1|Name=mRNA_H-paniculata_contig1079.502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig1079:1297..3527+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCTGCCTTACCTACTTCAATTTCCCCGCTCGCGCCGAAGCGACTCG
GCTGGCCTTCTCCGTTGGTGACGTGGAGTTCGAAGACAAGCGCATTTCTT
TCGAAGAGTTTGCGGACGTGGTGTCGAAGACACCGTTTGCTCAAGTGCCA
ATCCTCGAGATGCCCTGCCTTACCTACTTCAATTTCCCCGCTCGCGCCGA
AGCGACTCGGCTGGCCTTCTCCGTTGGTGACGTGGAGTTCGAAGACAAGC
GCATTTCTTTCGAAGAGTTTGCGGACGTGGTGTCGAAGACACCGTTTGCT
CAAGTGCCAATCCTCGAGGTGGCCAAGTACTATGCCTCCAGAATGATCGA
ATAAGTGGCCAAGTACTATGCCTCCAGAATGATCGAATAA
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