mRNA_H-paniculata_contig10789.501.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10789.501.1
Unique NamemRNA_H-paniculata_contig10789.501.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10789.501.1 vs. uniprot
Match: A0A836CBV5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBV5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.320e-5
Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = -2 
Query:  180 YRLECHQAEAGKEVPVHRTYMVYAGVMIAVYPIGIPALYGVLLW 311
            Y +EC         P H  Y+ YAGVM+ VYPIG+PAL+ VLLW
Sbjct: 1896 YSIECG-------TPTHTAYVAYAGVMVLVYPIGVPALFAVLLW 1932
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BLAST of mRNA_H-paniculata_contig10789.501.1 vs. uniprot
Match: A0A835YXM1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXM1_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.720e-5
Identity = 25/44 (56.82%), Postives = 27/44 (61.36%), Query Frame = -2 
Query:  180 YRLECHQAEAGKEVPVHRTYMVYAGVMIAVYPIGIPALYGVLLW 311
            Y L C       +   H+ Y VYAGVMI VYPIGIPALY  LLW
Sbjct:    5 YSLSC-------DTSTHKAYCVYAGVMILVYPIGIPALYMALLW 41
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BLAST of mRNA_H-paniculata_contig10789.501.1 vs. uniprot
Match: A0A7S1Y0D2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0D2_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 5.200e-5
Identity = 22/44 (50.00%), Postives = 26/44 (59.09%), Query Frame = -2 
Query:  180 YRLECHQAEAGKEVPVHRTYMVYAGVMIAVYPIGIPALYGVLLW 311
            Y L+C         P H  +MVYA VM  +YPIG+P LYG LLW
Sbjct:   87 YSLQCF-------TPRHYQFMVYAAVMFVIYPIGVPCLYGYLLW 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10789.501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CBV5_9STRA1.320e-552.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXM1_9STRA1.720e-556.82Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S1Y0D2_9STRA5.200e-550.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10789contigH-paniculata_contig10789:2642..2953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928782.536739-CDS-H-paniculata_contig10789:2641..29531622928782.536739-CDS-H-paniculata_contig10789:2641..2953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10789 2642..2953 +
1691480617.8251572-CDS-H-paniculata_contig10789:2641..29531691480617.8251572-CDS-H-paniculata_contig10789:2641..2953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10789 2642..2953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10789.501.1prot_H-paniculata_contig10789.501.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10789 2642..2953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10789.501.1

>prot_H-paniculata_contig10789.501.1 ID=prot_H-paniculata_contig10789.501.1|Name=mRNA_H-paniculata_contig10789.501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MSFCLGRGDTGIGALSGRPRSLSEAHDGCLAVSAISSSSNGRLRVASCTR
GPGAGRRQAHHSRTPYNAGMPIGYTAIITPAYTIYVRCTGTSFPASAWWH
SSR*
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mRNA from alignment at H-paniculata_contig10789:2642..2953+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10789.501.1 ID=mRNA_H-paniculata_contig10789.501.1|Name=mRNA_H-paniculata_contig10789.501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at H-paniculata_contig10789:2642..2953+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTTCTGTCTCGGCCGCGGGGATACTGGGATTGGAGCTCTATCTGG
CAGACCTCGTTCGCTCAGCGAGGCCCACGATGGCTGTCTTGCGGTCTCGG
CCATATCATCCTCTTCGAATGGTCGACTTCGTGTCGCATCTTGTACCAGG
GGCCCAGGCGCCGGTCGACGCCAAGCCCACCATAGCAGAACCCCGTACAA
CGCAGGGATGCCGATCGGGTACACTGCAATCATCACTCCAGCGTACACCA
TATACGTTCGATGTACAGGTACTTCTTTTCCGGCCTCAGCCTGGTGGCAC
TCTAGTCGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig10789:2642..2953+

>mRNA_H-paniculata_contig10789.501.1 ID=mRNA_H-paniculata_contig10789.501.1|Name=mRNA_H-paniculata_contig10789.501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig10789:2642..2953+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTTCTGTCTCGGCCGCGGGGATACTGGGATTGGAGCTCTATCTGG
CAGACCTCGTTCGCTCAGCGAGGCCCACGATGGCTGTCTTGCGGTCTCGG
CCATATCATCCTCTTCGAATGGTCGACTTCGTGTCGCATCTTGTACCAGG
GGCCCAGGCGCCGGTCGACGCCAAGCCCACCATAGCAGAACCCCGTACAA
CGCAGGGATGCCGATCGGGTACACTGCAATCATCACTCCAGCGTACACCA
TATACGTTCGATGTACAGGTACTTCTTTTCCGGCCTCAGCCTGGTGGCAC
TCTAGTCGGTAAATGTCGTTCTGTCTCGGCCGCGGGGATACTGGGATTGG
AGCTCTATCTGGCAGACCTCGTTCGCTCAGCGAGGCCCACGATGGCTGTC
TTGCGGTCTCGGCCATATCATCCTCTTCGAATGGTCGACTTCGTGTCGCA
TCTTGTACCAGGGGCCCAGGCGCCGGTCGACGCCAAGCCCACCATAGCAG
AACCCCGTACAACGCAGGGATGCCGATCGGGTACACTGCAATCATCACTC
CAGCGTACACCATATACGTTCGATGTACAGGTACTTCTTTTCCGGCCTCA
GCCTGGTGGCACTCTAGTCGGTAA
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