mRNA_H-paniculata_contig10788.500.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10788.500.1
Unique NamemRNA_H-paniculata_contig10788.500.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10788.500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10788contigH-paniculata_contig10788:606..1291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size686
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10788.500.1prot_H-paniculata_contig10788.500.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10788 825..1268 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928782.4709654-UTR-H-paniculata_contig10788:605..8241622928782.4709654-UTR-H-paniculata_contig10788:605..824Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10788 606..824 +
1691480617.781645-UTR-H-paniculata_contig10788:605..8241691480617.781645-UTR-H-paniculata_contig10788:605..824Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10788 606..824 +
1622928782.4973397-UTR-H-paniculata_contig10788:1268..12911622928782.4973397-UTR-H-paniculata_contig10788:1268..1291Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10788 1269..1291 +
1691480617.8128645-UTR-H-paniculata_contig10788:1268..12911691480617.8128645-UTR-H-paniculata_contig10788:1268..1291Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10788 1269..1291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928782.483466-CDS-H-paniculata_contig10788:824..12681622928782.483466-CDS-H-paniculata_contig10788:824..1268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10788 825..1268 +
1691480617.792225-CDS-H-paniculata_contig10788:824..12681691480617.792225-CDS-H-paniculata_contig10788:824..1268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10788 825..1268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10788.500.1

>prot_H-paniculata_contig10788.500.1 ID=prot_H-paniculata_contig10788.500.1|Name=mRNA_H-paniculata_contig10788.500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
MWALRVLPSVAISQVLTTSAVRASTVALCRLPASSFSSFLRLATCRWLSI
APFSPRLNSGSGSSLRDAQSANTSMCGGNQLSGIGGHSSSITSFTVIFSH
SSSLASAAPTPCRSVPLPAPLSATPLASSSAWRRASLSCRSCFILRL*
back to top

mRNA from alignment at H-paniculata_contig10788:606..1291+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10788.500.1 ID=mRNA_H-paniculata_contig10788.500.1|Name=mRNA_H-paniculata_contig10788.500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=686bp|location=Sequence derived from alignment at H-paniculata_contig10788:606..1291+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTCCCCGCGTCGCTATTGGTATTGCCTGACCCGCTGTTATCGGAGGTA
GGCCGCTCAGCCGCGCTTCATCTTCTTCCTCCTGTTTATTCATGAGAGCG
ATGAGCTTGTAAGAGGTAACGTCGGTCATCTCGTCGTTGCCCATTGATTT
GTACAGGGTGATCGCCTTTTCCAGTCTCGTAGTCCTACCCGGGCTTCCCA
CGTCGCTGCGATTCTGCTCATGTGGGCATTGAGGGTCTTACCCTCGGTCG
CAATATCGCAGGTGCTGACGACGAGTGCGGTGCGCGCCTCCACCGTGGCT
CTATGCCGTTTGCCGGCTTCCTCTTTCTCCTCTTTTTTGCGTTTGGCTAC
ATGTCGCTGGCTAAGCATAGCTCCGTTCTCGCCCAGATTGAACTCCGGCT
CGGGATCATCGCTAAGAGATGCCCAAAGTGCGAACACGAGCATGTGTGGC
GGCAACCAATTATCCGGCATTGGGGGGCACTCGTCGTCGATTACGTCTTT
CACCGTAATATTTTCACATTCTTCGTCGCTGGCGTCTGCCGCGCCGACGC
CCTGCCGGTCAGTTCCCTTGCCCGCGCCACTGTCCGCCACGCCGTTGGCC
TCCTCGTCCGCTTGGCGTAGGGCTTCCCTCTCCTGTCGTTCTTGCTTTAT
TTTGAGGTTATGAGCAGCAACTATCTTTCTTTTCTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig10788:606..1291+

>mRNA_H-paniculata_contig10788.500.1 ID=mRNA_H-paniculata_contig10788.500.1|Name=mRNA_H-paniculata_contig10788.500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig10788:606..1291+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGGCATTGAGGGTCTTACCCTCGGTCGCAATATCGCAGGTGCTGAC
GACGAGTGCGGTGCGCGCCTCCACCGTGGCTCTATGCCGTTTGCCGGCTT
CCTCTTTCTCCTCTTTTTTGCGTTTGGCTACATGTCGCTGGCTAAGCATA
GCTCCGTTCTCGCCCAGATTGAACTCCGGCTCGGGATCATCGCTAAGAGA
TGCCCAAAGTGCGAACACGAGCATGTGTGGCGGCAACCAATTATCCGGCA
TTGGGGGGCACTCGTCGTCGATTACGTCTTTCACCGTAATATTTTCACAT
TCTTCGTCGCTGGCGTCTGCCGCGCCGACGCCCTGCCGGTCAGTTCCCTT
GCCCGCGCCACTGTCCGCCACGCCGTTGGCCTCCTCGTCCGCTTGGCGTA
GGGCTTCCCTCTCCTGTCGTTCTTGCTTTATTTTGAGGTTATGAATGTGG
GCATTGAGGGTCTTACCCTCGGTCGCAATATCGCAGGTGCTGACGACGAG
TGCGGTGCGCGCCTCCACCGTGGCTCTATGCCGTTTGCCGGCTTCCTCTT
TCTCCTCTTTTTTGCGTTTGGCTACATGTCGCTGGCTAAGCATAGCTCCG
TTCTCGCCCAGATTGAACTCCGGCTCGGGATCATCGCTAAGAGATGCCCA
AAGTGCGAACACGAGCATGTGTGGCGGCAACCAATTATCCGGCATTGGGG
GGCACTCGTCGTCGATTACGTCTTTCACCGTAATATTTTCACATTCTTCG
TCGCTGGCGTCTGCCGCGCCGACGCCCTGCCGGTCAGTTCCCTTGCCCGC
GCCACTGTCCGCCACGCCGTTGGCCTCCTCGTCCGCTTGGCGTAGGGCTT
CCCTCTCCTGTCGTTCTTGCTTTATTTTGAGGTTATGA
back to top