mRNA_H-paniculata_contig10782.498.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig10782.498.1 vs. uniprot
Match: D7FI05_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI05_ECTSI) HSP 1 Score: 548 bits (1412), Expect = 2.540e-178 Identity = 300/550 (54.55%), Postives = 354/550 (64.36%), Query Frame = 1
Query: 1 ADPSWSAELLARVAEGLGLVLERPGGVKGCCVPGMWCGTHGCYTLAVGNWFSNHGGYVGMPADEYSVYTCVESGLSPSSGSXXXXXXXXXXXXXXXXXVSHDNPQFGQAKGXXXXXXXXXXXXXXXXXXXXXXXXXXXTIISVNPDVAKSGEALTLVGSGFGEDREAVRVMVGGRECRDPELCHRVCRPCDENRXXXXXXMCANDDLTKDKVCLPLCDGPKASCPCEHRCLPRQFEVQGMP--LEVNLCRPPDADPNFLCHGSVLREQERIQCTVPVLTWDQAETEVFQHVGIDRGLLHERGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVSVAVGNRAAVWRAGVAYAPNGCRSAGDCDDGDACSFDACVKRQCVHNAVEEGYGCQAQPTSVVSRGDVYRYFQALDKADPLEHKEFVRMMQAESKRSSVTGVDDYPVESHKWDTVFPIFGTKYNELFISPNGAVFVSS------GKSSAVSPSTEAFFPVLQADWNPSNGQASSAVLLMIEEEHFSVLYQDVFLFRK 1626
A P WS L+ VA GLGL LERPGG+ GCCVPGMWCG GCYTLA G+ FSN+GGYVG+P D+YS+YTC E + ++ + S P A TI+SV P+V K+GEAL +VGSGFGE VRVMVGGR+CRDPELCH VCRPC E MC D L+K+KVCLP+CDG + SCPC+HRCLP++FE+QG P + VNLCRPPDADPNFLCHGSVLREQERIQCTVPVL WDQAETE G G +G XXXXXXXXXXXX S S++VG+R AVW V YAP C SA DCDDGDACSFDACV+ CVH V+EGYGCQAQP RGD YRYFQ +D+ADP+E EFV ++A++K SSVT DDYPVE H W FP++GTKY +++ISPNGA+FV G SAVSPSTEA+FPVL+ADWNPS+ +A+S+VL+MIEE+ FSVLYQDVFLF++
Sbjct: 115 ARPLWSENLVTVVANGLGLELERPGGLAGCCVPGMWCGPRGCYTLAFGDTFSNYGGYVGVPPDDYSIYTCKEPSVPLAAPADSSTPAPAVNGSDPGDAASA--PGSTTAALPTLSPTAPAAEVEEKAGDGSPAPPVRPTIVSVGPEVVKAGEALMVVGSGFGEAVSDVRVMVGGRDCRDPELCHLVCRPCGEEDRCEFDEMCMEDGLSKEKVCLPICDGTEGSCPCDHRCLPKRFELQGEPHSMVVNLCRPPDADPNFLCHGSVLREQERIQCTVPVLVWDQAETESSDRAGAGLGQKPPVRRGRHLDGDGRRGGERVEGRGVVEGEGEXXXXXXXXXXXXELSAA-----SFSLSVGDRGAVWEGSVEYAPRDCHSAEDCDDGDACSFDACVEGSCVHTGVQEGYGCQAQPVHATWRGDTYRYFQIVDRADPVEQAEFVAEVRAQNKLSSVTFADDYPVEFHNWRE-FPVYGTKYEDVYISPNGALFVPPLQTVVPGGLSAVSPSTEAYFPVLKADWNPSDSRAASSVLVMIEEDQFSVLYQDVFLFKR 656
BLAST of mRNA_H-paniculata_contig10782.498.1 vs. uniprot
Match: A0A6H5L2U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2U7_9PHAE) HSP 1 Score: 254 bits (648), Expect = 1.920e-75 Identity = 130/256 (50.78%), Postives = 152/256 (59.38%), Query Frame = 1
Query: 1 ADPSWSAELLARVAEGLGLVLERPGGVKGCCVPGMWCGTHGCYTLAVGNWFSNHGGYVGMPADEYSVYTCVESGLSPSSGSXXXXXXXXXXXXXXXXXVSHDNPQFGQAKGXXXXXXXXXXXXXXXXXXXXXXXXXXX--TIISVNPDVAKSGEALTLVGSGFGEDREAVRVMVGGRECRDPELCHRVCRPCDENRXXXXXXMCANDDLTKDKVCLPLCDGPKASCPCEHRCLPRQFEVQGMP--LEVNLCRPPDA 756
A P WS LL +A GLGL LER GG+ GCCVPGMWCG GCYTLA G+ FSN+GGYVG+PAD+YS+YTC E PS SH G T++SV P+V K+GEAL +VGSGFGE VRVMVGGR+CRDPELCH VCRPC E MC D L+K+KVCLP+CDG + SCPC+HRCLP++FE+QG P + VNLCRPPDA
Sbjct: 127 AQPLWSENLLTVIANGLGLELERSGGLAGCCVPGMWCGPRGCYTLAFGDTFSNYGGYVGVPADDYSIYTCKE----PSVPLAAPVDSSTPAPAVNGSDPSHAASAHGSTTAALPTLSPTAPAAEVGEEAGDGSPAPPVRPTVVSVGPEVVKAGEALMVVGSGFGEAVSDVRVMVGGRDCRDPELCHLVCRPCGEEDRCEFDEMCMEDGLSKEKVCLPICDGTEGSCPCDHRCLPKRFELQGEPHSMVVNLCRPPDA 378
BLAST of mRNA_H-paniculata_contig10782.498.1 vs. uniprot
Match: A0A6H5LLL6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLL6_9PHAE) HSP 1 Score: 150 bits (378), Expect = 1.190e-34 Identity = 75/125 (60.00%), Postives = 99/125 (79.20%), Query Frame = 1
Query: 1270 QALDKADPLEHKEFVRMMQAESKRSSVTGVDDYPVESHKWDTVFPIFGTKYNELFISPNGAVFVSS------GKSSAVSPSTEAFFPVLQADWNPSNGQASSAVLLMIEEEHFSVLYQDVFLFRK 1626
Q +D+ADP+E EFV ++A++K SSVT DDYPVE H W FP++GTKY +++ISPNGA+FV G SAVSPSTEA+FPVL+ADWNPS+ +A+S+VL++IEE+ FSVLYQDVFLF++
Sbjct: 18 QIVDRADPVEQAEFVAEVRAQNKLSSVTFADDYPVEFHNWRE-FPVYGTKYEDVYISPNGALFVPPLQTVVPGGLSAVSPSTEAYFPVLKADWNPSDSRAASSVLVVIEEDQFSVLYQDVFLFKR 141 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10782.498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10782.498.1 >prot_H-paniculata_contig10782.498.1 ID=prot_H-paniculata_contig10782.498.1|Name=mRNA_H-paniculata_contig10782.498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=546bp ADPSWSAELLARVAEGLGLVLERPGGVKGCCVPGMWCGTHGCYTLAVGNWback to top mRNA from alignment at H-paniculata_contig10782:835..8316+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10782.498.1 ID=mRNA_H-paniculata_contig10782.498.1|Name=mRNA_H-paniculata_contig10782.498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7482bp|location=Sequence derived from alignment at H-paniculata_contig10782:835..8316+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10782:835..8316+ >mRNA_H-paniculata_contig10782.498.1 ID=mRNA_H-paniculata_contig10782.498.1|Name=mRNA_H-paniculata_contig10782.498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3276bp|location=Sequence derived from alignment at H-paniculata_contig10782:835..8316+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |