mRNA_H-paniculata_contig10781.497.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10781.497.1
Unique NamemRNA_H-paniculata_contig10781.497.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig10781.497.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 5.930e-65
Identity = 114/231 (49.35%), Postives = 165/231 (71.43%), Query Frame = 1 
Query: 2545 RRDDEEGGDWPFRAAVGCLLWLATMTRPDIANAVRDVARHSHNPCARHWAGVLKILSYLDKNRSLGLTFTRGSRLELDLYADAGFAEKSWNRRSVSGVAVMLGGVAVRFSSSTQHCATVSTTETEYVALGEEARQGLYVKGVLAFLRPELYGIGIKLFEDNAVAQSLAENPRSSSWSRYIDVRYHFIRDLVKAGNVSVHHVNSKDQHADILTNALPLQMLRDHRRVLMNLS 3237
            +RDDE GG+WP R A+G ++W++T +RPDI+ AVR VARH+H P  RHW  ++KIL+YL + R LG+T+ RGS L L +Y DA +A+   +RRSVSG+A  +GG  +   S TQ   ++S+TE EY+A GE  ++ L+V+ VL+F+ PE  G  I++ EDN  A +L +NP SS+ S++IDVRYHFIR L ++G++S+  V++ +QHAD+LT AL    L+ HRR LMN +
Sbjct:  279 KRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNFA 508
[Close]
BLAST of mRNA_H-paniculata_contig10781.497.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 6.370e-65
Identity = 115/230 (50.00%), Postives = 165/230 (71.74%), Query Frame = 1 
Query: 2545 RRDDEEGGDWPFRAAVGCLLWLATMTRPDIANAVRDVARHSHNPCARHWAGVLKILSYLDKNRSLGLTFTRGSRLELDLYADAGFAEKSWNRRSVSGVAVMLGGVAVRFSSSTQHCATVSTTETEYVALGEEARQGLYVKGVLAFLRPELYGIGIKLFEDNAVAQSLAENPRSSSWSRYIDVRYHFIRDLVKAGNVSVHHVNSKDQHADILTNALPLQMLRDHRRVLMNL 3234
            +RDDE GG+WP R A+G ++W++T +RPDI+ AVR VARH+H P  RHW  ++KIL+YL + R LG+T+ RGS L L +Y DA +A+   +RRSVSG+A  +GG  +   S TQ   ++S+TE EY+A GE  ++ L+V+ VL+F+ PE  G  I++ EDN  A +L +NP SS+ S++IDVRYHFIR L ++G++S+  V++ +QHAD+LT AL    L+ HRR LMNL
Sbjct:  366 KRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 594
[Close]
BLAST of mRNA_H-paniculata_contig10781.497.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 3.450e-62
Identity = 115/230 (50.00%), Postives = 166/230 (72.17%), Query Frame = 1 
Query: 2545 RRDDEEGGDWPFRAAVGCLLWLATMTRPDIANAVRDVARHSHNPCARHWAGVLKILSYLDKNRSLGLTFTRGSRLELDLYADAGFAEKSWNRRSVSGVAVMLGGVAVRFSSSTQHCATVSTTETEYVALGEEARQGLYVKGVLAFLRPELYGIGIKLFEDNAVAQSLAENPRSSSWSRYIDVRYHFIRDLVKAGNVSVHHVNSKDQHADILTNALPLQMLRDHRRVLMNL 3234
            +RDDE GG+WP R A+G ++W++T +RPDI+ AVR VARH+H P  RHW  ++KIL+YL + R LG+T+ RGS L L++Y DA +A+   +RRSVSG+A  +GG  +   S TQ   ++S+TE EY+A GE  ++ L+V+ VL+F+ PE  G  I++ EDN  A +L +NP SS+ S++IDVRYHFIR L ++G++S+  V++ +QHAD+LT AL    L+ HRR LMNL
Sbjct:  965 KRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 1193
[Close]
BLAST of mRNA_H-paniculata_contig10781.497.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 8.400e-62
Identity = 112/231 (48.48%), Postives = 152/231 (65.80%), Query Frame = 1 
Query: 2551 DDEEGGDWPFRAAVGCLLWLATMTRPDIANAVRDVARHSHNPCARHWAGVLKILSYLDKNRSLGLTFTRGSRLELD--LYADAGFAEKSWNRRSVSGVAVMLGGVAVRFSSSTQHCATVSTTETEYVALGEEARQGLYVKGVLAFLRPELYGIGIKLFEDNAVAQSLAENPRSSSWSRYIDVRYHFIRDLVKAGNVSVHHVNSKDQHADILTNALPLQMLRDHRRVLMNLS 3237
            ++EE GD PFR  VGCL+W+A  TRPDI+NAVR VARHSH P   HW    KIL+YL     L L F R S +++   +Y  A FA K+ +RRSVSG  V + G+ V ++S TQ C   ST+E EY+A+G+  ++ L+  G+L FLRP      IK+ EDN  A +LA+NP SS   ++IDVR+HF+R L + G + + HV+SK+QHADILT ALP ++   HR  ++ LS
Sbjct:    2 ENEEAGDVPFREVVGCLMWIACQTRPDISNAVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVAADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAMGDGVKEALFEDGMLQFLRPSEKSREIKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKALPRELFEVHRNFVLGLS 232
[Close]
BLAST of mRNA_H-paniculata_contig10781.497.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 1.060e-61
Identity = 115/230 (50.00%), Postives = 166/230 (72.17%), Query Frame = 1 
Query: 2545 RRDDEEGGDWPFRAAVGCLLWLATMTRPDIANAVRDVARHSHNPCARHWAGVLKILSYLDKNRSLGLTFTRGSRLELDLYADAGFAEKSWNRRSVSGVAVMLGGVAVRFSSSTQHCATVSTTETEYVALGEEARQGLYVKGVLAFLRPELYGIGIKLFEDNAVAQSLAENPRSSSWSRYIDVRYHFIRDLVKAGNVSVHHVNSKDQHADILTNALPLQMLRDHRRVLMNL 3234
            +RDDE GG+WP R A+G ++W++T +RPDI+ AVR VARH+H P  RHW  ++KIL+YL + R LG+T+ RGS L L++Y DA +A+   +RRSVSG+A  +GG  +   S TQ   ++S+TE EY+A GE  ++ L+V+ VL+F+ PE  G  I++ EDN  A +L +NP SS+ S++IDVRYHFIR L ++G++S+  V++ +QHAD+LT AL    L+ HRR LMNL
Sbjct: 1668 KRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLEVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 1896
[Close]
BLAST of mRNA_H-paniculata_contig10781.497.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 1.750e-61
Identity = 117/238 (49.16%), Postives = 164/238 (68.91%), Query Frame = 1 
Query: 2521 DGNVYSSLRRDDEEGGDWPFRAAVGCLLWLATMTRPDIANAVRDVARHSHNPCARHWAGVLKILSYLDKNRSLGLTFTRGSRLELDLYADAGFAEKSWNRRSVSGVAVMLGGVAVRFSSSTQHCATVSTTETEYVALGEEARQGLYVKGVLAFLRPELYGIGIKLFEDNAVAQSLAENPRSSSWSRYIDVRYHFIRDLVKAGNVSVHHVNSKDQHADILTNALPLQMLRDHRRVLMNL 3234
            D N     +RDDE G D P R A+GCL+W AT TRPDIA A+  V R++H P  R W  +++ILSYL+    LG+T+ RGS L+L++Y DA +A++   RRSV+G+AV +GG  V  +S TQ   ++ST+E EY+A GE  ++ L+V+ VL+F+ PE  G  IK+ EDN  A SL +NP SS+ S++IDVR+HFIR+L K+G +SV ++ + +QHAD+LT AL    L DHR  LMN+
Sbjct: 1007 DPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNI 1244
[Close]
BLAST of mRNA_H-paniculata_contig10781.497.1 vs. uniprot
Match: A0A6H5KPN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN5_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 2.460e-61
Identity = 112/247 (45.34%), Postives = 159/247 (64.37%), Query Frame = 1 
Query: 2494 SKGNVGPCQDGNVYSSLRRDDEEGGDWPFRAAVGCLLWLATMTRPDIANAVRDVARHSHNPCARHWAGVLKILSYLDKNRSLGLTFTRGSRLELDLYADAGFAEKSWNRRSVSGVAVMLGGVAVRFSSSTQHCATVSTTETEYVALGEEARQGLYVKGVLAFLRPELYGIGIKLFEDNAVAQSLAENPRSSSWSRYIDVRYHFIRDLVKAGNVSVHHVNSKDQHADILTNALPLQMLRDHRRVLMNL 3234
            SK  + P          R +DEEGG+WP R A+G ++W++T +RPD++ AVR VARH+H P  RHW  + KIL YL   R LG+T+ RGS L L +Y DA +A+   +RRSVSG+A  +GG  V   S TQ   ++S TE EY+A  +  ++ L+V+ V +F+ PE  G  I++ EDN  A +L +NP SS  +++IDVR+HFIR L ++G++SV  V + +QHAD+LT AL    L+ HRR   NL
Sbjct:   12 SKNKIDPAASTRARGPTR-EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSATEAEYIAAEDGVKEALFVRAVQSFVVPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRASLQYHRRKPTNL 256
[Close]
BLAST of mRNA_H-paniculata_contig10781.497.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 2.520e-61
Identity = 115/230 (50.00%), Postives = 165/230 (71.74%), Query Frame = 1 
Query: 2545 RRDDEEGGDWPFRAAVGCLLWLATMTRPDIANAVRDVARHSHNPCARHWAGVLKILSYLDKNRSLGLTFTRGSRLELDLYADAGFAEKSWNRRSVSGVAVMLGGVAVRFSSSTQHCATVSTTETEYVALGEEARQGLYVKGVLAFLRPELYGIGIKLFEDNAVAQSLAENPRSSSWSRYIDVRYHFIRDLVKAGNVSVHHVNSKDQHADILTNALPLQMLRDHRRVLMNL 3234
            +RDDE GG+WP R A+G ++W++T +RPDI+ AVR VARH+H P  RHW  ++KIL+YL + R LG+T+ RGS L L +Y DA +A+   +RRSVSG+A  +GG  +   S TQ   ++S+TE EY+A GE  ++ L+V+ VL+F+ PE  G  I++ EDN  A +L +NP SS+ S++IDVRYHFIR L ++G++S+  V++ +QHAD+LT AL    L+ HRR LMNL
Sbjct: 1345 KRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 1573
[Close]
BLAST of mRNA_H-paniculata_contig10781.497.1 vs. uniprot
Match: A0A6H5KCA5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA5_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 2.790e-61
Identity = 110/235 (46.81%), Postives = 158/235 (67.23%), Query Frame = 1 
Query: 2545 RRDDEEGGDWPFRAAVGCLLWLATMTRPDIANAVRDVARHSHNPCARHWAGVLKILSYLDKNRSLGLTFTRGSRLELDLYADAGFAEKSWNRRSVSGVAVMLGGVAVRFSSSTQHCATVSTTETEYVALGEEARQGLYVKGVLAFLRPELYGIGIKLFEDNA-----VAQSLAENPRSSSWSRYIDVRYHFIRDLVKAGNVSVHHVNSKDQHADILTNALPLQMLRDHRRVLMNL 3234
            +R+DEEGG+WP R A+G ++W++T +RPD++ AVR VARH+H P  RHW  + KIL YL   R LG+T+ RGS L L +Y DA +A+   +RRSVSG+A   GG  V   S  Q   ++S+TE E++A GE  ++ L+++ VL+F+ PE  G  I++ EDN      V   L +NP SS  +++IDVR+HFIR L ++G+++V  V + +QHAD+LT AL    L+ HRR LMNL
Sbjct:   24 KREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTGGGTVVSHGSKKQSIVSLSSTEAEHIAAGEGVKEALFMRAVLSFVAPETRGSSIQVLEDNQGGMALVQNPLVQNPLSSGRTKHIDVRFHFIRGLFRSGDITVKFVPTTEQHADLLTQALSRASLQYHRRKLMNL 257
[Close]
BLAST of mRNA_H-paniculata_contig10781.497.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 5.330e-61
Identity = 117/238 (49.16%), Postives = 164/238 (68.91%), Query Frame = 1 
Query: 2521 DGNVYSSLRRDDEEGGDWPFRAAVGCLLWLATMTRPDIANAVRDVARHSHNPCARHWAGVLKILSYLDKNRSLGLTFTRGSRLELDLYADAGFAEKSWNRRSVSGVAVMLGGVAVRFSSSTQHCATVSTTETEYVALGEEARQGLYVKGVLAFLRPELYGIGIKLFEDNAVAQSLAENPRSSSWSRYIDVRYHFIRDLVKAGNVSVHHVNSKDQHADILTNALPLQMLRDHRRVLMNL 3234
            D N     +RDDE G D P R A+GCL+W AT TRPDIA A+  V R++H P  R W  +++ILSYL+    LG+T+ RGS L+L++Y DA +A++   RRSV+G+AV +GG  V  +S TQ   ++ST+E EY+A GE  ++ L+V+ VL+F+ PE  G  IK+ EDN  A SL +NP SS+ S++IDVR+HFIR+L K+G +SV ++ + +QHAD+LT AL    L DHR  LMN+
Sbjct: 1560 DPNADLGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNI 1797
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10781.497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG0_9PHAE5.930e-6549.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGX6_9PHAE6.370e-6550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4H5_9PHAE3.450e-6250.00CCHC-type domain-containing protein n=11 Tax=Ectoc... [more]
A0A6H5JW47_9PHAE8.400e-6248.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LGF7_9PHAE1.060e-6150.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKS3_9PHAE1.750e-6149.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPN5_9PHAE2.460e-6145.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L715_9PHAE2.520e-6150.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KCA5_9PHAE2.790e-6146.81Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE5.330e-6149.16Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10781contigH-paniculata_contig10781:2338..7421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue1.4e-35
Seed eggNOG ortholog67593.Physo139221
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size3683
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10781.497.1prot_H-paniculata_contig10781.497.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10781 5487..6981 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928781.3195777-UTR-H-paniculata_contig10781:2337..42111622928781.3195777-UTR-H-paniculata_contig10781:2337..4211Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10781 2338..4211 +
1691480617.601964-UTR-H-paniculata_contig10781:2337..42111691480617.601964-UTR-H-paniculata_contig10781:2337..4211Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10781 2338..4211 +
1622928781.3305452-UTR-H-paniculata_contig10781:4894..54861622928781.3305452-UTR-H-paniculata_contig10781:4894..5486Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10781 4895..5486 +
1691480617.6128237-UTR-H-paniculata_contig10781:4894..54861691480617.6128237-UTR-H-paniculata_contig10781:4894..5486Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10781 4895..5486 +
1622928781.3651707-UTR-H-paniculata_contig10781:6981..74211622928781.3651707-UTR-H-paniculata_contig10781:6981..7421Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10781 6982..7421 +
1691480617.638911-UTR-H-paniculata_contig10781:6981..74211691480617.638911-UTR-H-paniculata_contig10781:6981..7421Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10781 6982..7421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928781.3405416-CDS-H-paniculata_contig10781:5486..55591622928781.3405416-CDS-H-paniculata_contig10781:5486..5559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10781 5487..5559 +
1691480617.621583-CDS-H-paniculata_contig10781:5486..55591691480617.621583-CDS-H-paniculata_contig10781:5486..5559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10781 5487..5559 +
1622928781.3551023-CDS-H-paniculata_contig10781:6277..69811622928781.3551023-CDS-H-paniculata_contig10781:6277..6981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10781 6278..6981 +
1691480617.6299362-CDS-H-paniculata_contig10781:6277..69811691480617.6299362-CDS-H-paniculata_contig10781:6277..6981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10781 6278..6981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10781.497.1

>prot_H-paniculata_contig10781.497.1 ID=prot_H-paniculata_contig10781.497.1|Name=mRNA_H-paniculata_contig10781.497.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=259bp
MPPVSGGCDSKGNVGPCQDGNVYSSLRRDDEEGGDWPFRAAVGCLLWLAT
MTRPDIANAVRDVARHSHNPCARHWAGVLKILSYLDKNRSLGLTFTRGSR
LELDLYADAGFAEKSWNRRSVSGVAVMLGGVAVRFSSSTQHCATVSTTET
EYVALGEEARQGLYVKGVLAFLRPELYGIGIKLFEDNAVAQSLAENPRSS
SWSRYIDVRYHFIRDLVKAGNVSVHHVNSKDQHADILTNALPLQMLRDHR
RVLMNLSN*
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mRNA from alignment at H-paniculata_contig10781:2338..7421+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10781.497.1 ID=mRNA_H-paniculata_contig10781.497.1|Name=mRNA_H-paniculata_contig10781.497.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5084bp|location=Sequence derived from alignment at H-paniculata_contig10781:2338..7421+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGATCGAGATCAGTGAATCGGCCGTGACGGGGCTAGGGGTGCAAACC
CCGACGGTGAGTCACTGGGTGTGTTTGGTCGAAGGACCGTAGAAGGAAAC
TATGCGTCGACGATGCCTGCCACAATGATGGGTCACTTTAAACCAAAGAC
CCCGTCCTTTTCTGGTAACTAGGAAGATTTTGCCCAGTTCCACATCGAAA
TGCTTAACTTCGCCGAGATGCACGGGTGTGAAGAAGCTTTCGTGAGAGAT
GTGTCCATGCCAGTGGGTGACAGAGAAACGTCGCTGGAAAGTTTAGTGGC
CGAAGGTTGCAGCAGATGGCCAGTGAAGAGCCATAGTTGGGCGTGGCAAC
TTTTATGTTCTGCGTTGAGAGGAAATGACTTGAAGCATATGAGACGGGCC
ACGTCACCTCGGCATGTCTGGGTTCGCCTGCAAGAGTGGTACATGCCCCA
AACTCAGGACGGAATTCGTACACTCTATAGTTCCCTCTTTGAGACGGAGA
TATCGGTTTGCACTAGCCCGGTCGCGCTTATGGCTCGAGGTTCTTGCCGT
GCGACTCAAAGCAAATGGCTGCGTGATCACGCAGAATCAAGTTTTCACCT
GCTTTTTGTCTGCACTTCTTACCTCCGAATATGAATGGCAAATCGAGTTT
CTGATAAGAGAAAGATATGTCACGAGAGAAATGATTTAGGGAGTTTCAGA
GAGAAGCTCGCGTGCGTTGTACAAGAAAGGCCTGGAAAAAGCAGGTACAA
GAAAGGCAAGGACGGCGGACAAGCTTCCGTCGCTGACGGGCAGGAAAAGT
CAGGAGGGCGAGCCGGGTGGGGCAACAAGTCAGGAGGCGGGAAGAGCGGT
TTCAAGAAATTCTTCAAGAAGGGAGCAGCGTCCAAGAACAGCGACTCCTC
ACCAATGTCCATGACTTCCGCAGCCGCGCCTACGCCTACAGGTTTCAAGT
GCGGGAAAAGTCAGAAGGTAGGGCACGAAACAGAGCGTTGCCCTGATTAG
ACGTGTCAAGGATGCGGGGGAAAGAGGCATTGCTCGGACGTGTGCCCTAC
CCTGCATGAGACGACCGTGATGGCTTTTCAAGAGCAAGAGGTTTCGGATG
GTGAAGAGTGCGACGCCTTCATTGCCGAAGATTTTCCAGGCGAGTTTGAC
ATATTTATTGATGGGGGTAGGTCGGGATAGCTTGGCGTTGGTGTAGAGGA
AGAGTCGTGGATCAGTGATAGTGGGGCCAATGGTCGTTCAATACCATCTG
CGGCTTACATGTCCAGCTATCCGCAAGTTAAGGAGACGCTGCAGATTGCG
TCAGGGCAGGTGATTCCGATTGTAGGTCGGAGAAACCTAAGCATAACGTT
TAGAACGAGGGATGAAAATGTGTCTCTTGCGGTTCTGAATGTCGCACATG
CTCCCGAACTACACTGCAATTTATTTTCGCTGAGGAAAGTGGCTGATGCT
GGTCACAAATATGTTGAGGATCATGAAGGAATATATGTTTATTTGAAGAC
TGGAGGAGTACTGGACATGCTTTTGAATGGCAGACTGAATTATTTACATG
GAAGCCGAGACGACTTCAATGCTAGCCCCTCTGAAAACGCCAATGCCGTA
ATTACTCCGGGTAGTGCGCCCGTCAAACCCGCTTCCCCTGTAGGCATCAA
CGACTTCCACTGCTCGCACGGCCATTCTTTCGAGGCGAATCTTCGATAAA
CTGCGGCTCAGATGGGAGTGGAACTGGAGGAAGAGCTTCACGGGTGCAAA
GGGTGTTCAATGCACAAAGGTGCGAAGAAGCCGATCAAGAGGTCGACAAA
CTCACAAGCGGACAAGAAGTTGGGCAGGGTTTTTGTCGATTTATCGGGTC
CGAAACCAGTCGAATCTCGTGGAGGTATGAGGTACACCTTGTTTATTAGA
GATGGTCATACGAGGTACATGTGGATCTATTTTCTGAGGAAAAAGAGTGA
TGCAGCTGAGAGTTTCGAGAGGTGGTTAGCAGATGTGCGTGTAGACGGGG
TCCCTTCTGAGGTCGCGATTGTACCATCAGACAATGGAGGAGAGGTTTTC
GGGGGAAAGTTTGACAAGCTTTGCAATGCGCGTAGCATCATCCGAGAATA
CACTGCCCCTGGAAACCCCGAGTTCAATGGCGTAGCGGAACGTGACCTCT
CTGCTGTAAAGATGGCTGGACTACCTTCTAGAGTACAAACACAGGTGCTG
TTTCCCGATTTCGACATCTATGACGGAAAATCTTTCTGGGCCGAAGCTTT
TAAATGGATTTACGGCGCGATGAATCGTACGGCAACAAAGGCGAACCCTG
GTTACCTATCGCCGTACCAGATGTGGTACGGTCGCCCTCCGCCGTTTAGT
CTTCCTCCATTTCTCAAGCCGGGGTATGATAAAGTAAAGAGAAACAATAA
GTTAGAACCGAAAGCAAGAGCGTGTTTCTACCTTGGACCGCAGCGCAACC
ACCCCAAGGACGCCATGCGCGTACTGTCTGAATCTGGTGCCGTTGTAACA
ACTCGCAGTGTCACGTGGGCTCATGTAACTGCGCAATCCACTCCCTCCTC
TGTGCAGCCGAAATGTCCGACGCCGGCAGAAAGTGAGGAGGGGAGGAACG
TGGAATATGTATATTTGCCTCGGCCGACAACTTTGCAGGAAGTCGAGAGG
GGGTAGCGACGACGTCTGTCCCAGCCGAGGCTTCTTCGCCATTAACAACC
GCAACGTCTTCCTCATCTTCATTGTCGTCCTTATCTCCGTCGTCGTCGTC
CTCACCTCCAACATCGTCTTCCTCAACAGTTTCGTTGGCTGCTTCAGGAG
CTTCGTCGTCTACAAGTGCGCAAGACAGTCTTGACAACGGAGCGAGTTTT
GGGGAGGGTCCCCTTCCCGCCCTTGCGGATAGAGAGGCGCGCCGCCTGGA
AGCGTATAACTTACCGACGCCCGATCCGATCCGGCAGGGGAGGACGAGAG
CAGAACAACGGAGGATACAGGAAGAGGAGGCGCGAACTTTGCTCGCTTTT
GATGCTGGACCTGAGTTAGAGTTCAAGATGTCCGACATCATGGAGGACGA
GACTGTTTCTCTGGTGGCAGGGGAGTTGAGTTTTGATCCCTTTTCGTCGA
ATGACGCGGAACCTTTACCTCGAAATATAGATGATGTGCGACGATCAAAA
TGCCGCCCGTTTCGGGAGGATGCGATTCAAAGGGAAATGTGGGGCCATGC
CAAGACGGGAACGTTTACTCTAGTAAGTGACAGCAAAGGGAAGAAACCGT
TTAGGGGGCAGTTCATTTGTTCATATAAAACTAACAACATGGGGGATGTG
GTGAAGTTCAAAATGGTAGCTGATGGAAGGACACAAATCCAAGACATAAA
CTACGATGAAGTATTTGCATTCACCCCCTCCGCCGCTGCTGTAAAGACGA
TGTTAGCCGTAGCAGTACAGGAGGAACTATAACTGTTTCATTTTGACACT
ACTCAGGCTTTCGTTCAGGCAGGATTGGATCATACCTTATCTATGAGACT
GCCTGCTGGGTGTGGTTCATTGTCGGGGAAGACTGTGAAGTCGGATAGAG
CTTTGTATGGTCTAAAACAGGCCGGTAGGCAGTGGAACACATGTTTGGTG
GACGAATTGGTGGATTTGAGGATGGAACAATCATAGTTGAACCTTGCGTG
TTTCGTGAGATGGTTGACGGCAGGGTTTCCCTGGTGCTGTCAGTACATGT
CGATGACGTGGTAGTAGCGGGCAAGGAAGTTGATATGCAACAGGTTTTGC
GATGCGCTTTCGCAAAACGTTTCCATGACAAATCTAGGGGAATCGGCCTG
GTACACCGGTTCTTCGTTCGACCGAGATTGGAGTAAAGGTACTTTGACGA
TGGACCAAACTGTTTTTGTTGACAACCTCATGAAGCGGTTCGAAATCACC
TCTGTATCTGAACTCTCTGCGACACCTCTTGCTGATCTAGGTCTACGGCG
TGATGATGAGGAAGGTGGAGACTGGCCGTTCAGGGCGGCAGTTGGATGCC
TTCTCTGGCTAGCCACGATGACCCGGCCGGACATAGCGAATGCTGTGCGA
GATGTGGCGCGACACTCGCATAACCCTTGCGCGCGTCACTGGGCTGGGGT
TCTGAAAATTCTGTCGTATCTTGACAAGAACAGGTCTTTGGGACTAACCT
TCACGCGAGGGTCAAGGCTGGAACTGGACCTATACGCTGATGCTGGTTTC
GCGGAAAAGTCTTGGAACAGACGCTCCGTGTCTGGGGTGGCTGTGATGCT
AGGAGGCGTTGCGGTCAGGTTTAGCAGCAGTACGCAGCACTGTGCTACTG
TTTCTACTACCGAGACGGAGTATGTGGCTCTTGGGGAGGAAGCTAGACAG
GGCTTGTATGTGAAGGGTGTGCTTGCATTCCTACGACCGGAATTGTACGG
TATCGGTATCAAGTTGTTCGAGGATAATGCTGTGGCACAATCTTTGGCTG
AAAACCCGCGGAGCTCTAGTTGGAGTAGATACATTGATGTAAGATACCAT
TTCATTCGTGATCTGGTGAAGGCCGGAAACGTGTCGGTGCACCATGTCAA
TTCAAAAGACCAGCACGCTGATATCCTTACCAATGCTCTTCCTTTACAGA
TGCTTAGGGATCACAGAAGAGTTTTGATGAATTTGTCTAACTGAATTTTT
GCACCGAATTTTTACGGACCATGCTCACGTAAAGCAGTCGGAAACTCGTT
CAGCTAGAATCCTACGCTATTAGTGGGCATAGGTTTTGGATTGACTGTCC
AGGTTTGCCACTGTCTTGGTCCTTGTTTGATGGGTGCTGAATATTGAAGG
GGTTTTGCCCGACCGCCGGGTTTTTCCCTCCGTGTTATGATTATTGTTGT
TGTGGATGGTACCCTTGGCTTCCCTTGTCTTATCTTCATTGGATGCGGAT
AACAAAGGAGGGTGTTCGAGTGTGTTGTTCCCCCATCTGGGATGAAGAAC
TAGGTGAGAGATGGACTGTTGTGACGCCATGCTAGAATATCGATTGTGGG
CGTTTTTGGAACAGATTTGACAGTTACATATGACCATGTTCCTGTTGGTC
TGGTTCGGGTCTGTCTGTATTTTGGTGCAGCCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig10781:2338..7421+

>mRNA_H-paniculata_contig10781.497.1 ID=mRNA_H-paniculata_contig10781.497.1|Name=mRNA_H-paniculata_contig10781.497.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at H-paniculata_contig10781:2338..7421+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGCCCGTTTCGGGAGGATGCGATTCAAAGGGAAATGTGGGGCCATG
CCAAGACGGGAACGTTTACTCTAATGCCGCCCGTTTCGGGAGGATGCGAT
TCAAAGGGAAATGTGGGGCCATGCCAAGACGGGAACGTTTACTCTAGTCT
ACGGCGTGATGATGAGGAAGGTGGAGACTGGCCGTTCAGGGCGGCAGTTG
GATGCCTTCTCTGGCTAGCCACGATGACCCGGCCGGACATAGCGAATGCT
GTGCGAGATGTGGCGCGACACTCGCATAACCCTTGCGCGCGTCACTGGGC
TGGGGTTCTGAAAATTCTGTCGTATCTTGACAAGAACAGGTCTTTGGGAC
TAACCTTCACGCGAGGGTCAAGGCTGGAACTGGACCTATACGCTGATGCT
GGTTTCGCGGAAAAGTCTTGGAACAGACGCTCCGTGTCTGGGGTGGCTGT
GATGCTAGGAGGCGTTGCGGTCAGGTTTAGCAGCAGTACGCAGCACTGTG
CTACTGTTTCTACTACCGAGACGGAGTATGTGGCTCTTGGGGAGGAAGCT
AGACAGGGCTTGTATGTGAAGGGTGTGCTTGCATTCCTACGACCGGAATT
GTACGGTATCGGTATCAAGTTGTTCGAGGATAATGCTGTGGCACAATCTT
TGGCTGAAAACCCGCGGAGCTCTAGTTGGAGTAGATACATTGATGTAAGA
TACCATTTCATTCGTGATCTGGTGAAGGCCGGAAACGTGTCGGTGCACCA
TGTCAATTCAAAAGACCAGCACGCTGATATCCTTACCAATGCTCTTCCTT
TACAGATGCTTAGGGATCACAGAAGAGTTTTGATGAATTTGTCTAACTGA
GTCTACGGCGTGATGATGAGGAAGGTGGAGACTGGCCGTTCAGGGCGGCA
GTTGGATGCCTTCTCTGGCTAGCCACGATGACCCGGCCGGACATAGCGAA
TGCTGTGCGAGATGTGGCGCGACACTCGCATAACCCTTGCGCGCGTCACT
GGGCTGGGGTTCTGAAAATTCTGTCGTATCTTGACAAGAACAGGTCTTTG
GGACTAACCTTCACGCGAGGGTCAAGGCTGGAACTGGACCTATACGCTGA
TGCTGGTTTCGCGGAAAAGTCTTGGAACAGACGCTCCGTGTCTGGGGTGG
CTGTGATGCTAGGAGGCGTTGCGGTCAGGTTTAGCAGCAGTACGCAGCAC
TGTGCTACTGTTTCTACTACCGAGACGGAGTATGTGGCTCTTGGGGAGGA
AGCTAGACAGGGCTTGTATGTGAAGGGTGTGCTTGCATTCCTACGACCGG
AATTGTACGGTATCGGTATCAAGTTGTTCGAGGATAATGCTGTGGCACAA
TCTTTGGCTGAAAACCCGCGGAGCTCTAGTTGGAGTAGATACATTGATGT
AAGATACCATTTCATTCGTGATCTGGTGAAGGCCGGAAACGTGTCGGTGC
ACCATGTCAATTCAAAAGACCAGCACGCTGATATCCTTACCAATGCTCTT
CCTTTACAGATGCTTAGGGATCACAGAAGAGTTTTGATGAATTTGTCTAA
CTGA
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