mRNA_H-paniculata_contig10781.496.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10781.496.1
Unique NamemRNA_H-paniculata_contig10781.496.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig10781.496.1 vs. uniprot
Match: A0A6H5J9Z8_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z8_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.870e-29
Identity = 71/154 (46.10%), Postives = 93/154 (60.39%), Query Frame = 2 
Query:  386 LGVAAFAIFKKKITSVLRSFPRRNGDKMPVMSDTVEVIRAAFQSSFTPSPIKASFEGAGLWPVDMHRALNRLRGCGPKRPALQGDRPPLAGVPVAIRKNVLVAALGDRAVRKLQVQGYAITRFRVSTVMFGGYLKHREATRH------GVPAGG 829
            L VA F  FKK++T  +++FP  +G  +P   D   VI  A+ +SFTP   KASF GAGLWPVD  RAL+RL    PKR   + DRPPL  VP+A+  + L   LG+RAVRKL  +G+ +T  RVSTV  G YL  + + +       G+P GG
Sbjct:  124 LDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRL--LKPKRKERETDRPPLQDVPIAVSNDRLEELLGERAVRKLLGEGHTLTGLRVSTVFLGDYLPSKRSKKPPTRANLGIPEGG 275
[Close]
BLAST of mRNA_H-paniculata_contig10781.496.1 vs. uniprot
Match: A0A6H5KS78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS78_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 4.490e-29
Identity = 72/156 (46.15%), Postives = 91/156 (58.33%), Query Frame = 2 
Query:  386 LGVAAFAIFKKKITSVLRSFPRRNGDKMPVMSDTVEVIRAAFQSSFTPSPIKASFEGAGLWPVDMHRALNRLRGCGPKRPALQGDRPPLAGVPVAIRKNVLVAALGDRAVRKLQVQGYAITRFRVSTVMFGGYLKHREATRH--------GVPAGG 829
            L V AF  FKK++T VL+ F   N   +P+  D   VI AA+Q SFTP   KASF GAGLWPVDM RAL RL+G   KR      RPPL  VP+A+    L  A+G+R +R+L+  G+ IT  +V TVM GG L  R+  +         G+P GG
Sbjct:  101 LDVVAFGTFKKEVTKVLQDFYHANDGLLPLKRDVPGVIAAAWQKSFTPERNKASFGGAGLWPVDMDRALTRLQGTA-KRKERPTGRPPLEDVPIAMTHEQLEEAIGERCLRQLKAGGHTITGLKVGTVMLGGLLTQRKRAKKLATSRGSLGLPHGG 255
[Close]
BLAST of mRNA_H-paniculata_contig10781.496.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 6.810e-29
Identity = 69/145 (47.59%), Postives = 89/145 (61.38%), Query Frame = 2 
Query:  386 LGVAAFAIFKKKITSVLRSFPRRNGDKMPVMSDTVEVIRAAFQSSFTPSPIKASFEGAGLWPVDMHRALNRLRGCGPKRPALQGDRPPLAGVPVAIRKNVLVAALGDRAVRKLQVQGYAITRFRVSTVMFGGYLKHREATRHGVP 820
            L VA F  FKK++  V+++FP RNG  +P   D   +I  A+ SSFTP   KASF GAGLWPVD  RAL+RL    PKR   + DRPPL  VP+A+    L   +GDR VR L+ +G+ IT  RVSTV+ G +L ++     G P
Sbjct:  332 LDVAGFGCFKKELAKVIQAFPARNGGALPRKRDMAGMIGLAWGSSFTPEINKASFAGAGLWPVDRERALSRL--LRPKRKVTETDRPPLEDVPIAVTNERLEELIGDRGVRALRAKGHTITGLRVSTVVLGNFLPNKNKRPKGPP 474
[Close]
BLAST of mRNA_H-paniculata_contig10781.496.1 vs. uniprot
Match: A0A6H5JE34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE34_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.810e-28
Identity = 71/154 (46.10%), Postives = 93/154 (60.39%), Query Frame = 2 
Query:  386 LGVAAFAIFKKKITSVLRSFPRRNGDKMPVMSDTVEVIRAAFQSSFTPSPIKASFEGAGLWPVDMHRALNRLRGCGPKRPALQGDRPPLAGVPVAIRKNVLVAALGDRAVRKLQVQGYAITRFRVSTVMFGGYLKHREATRH------GVPAGG 829
            L VA F  FKK++T  +++FP  +G  +P   D   VI  A+ +SFTP   KASF GAGLWPVD  RAL+RL    PKR   + DRPPL  VP+A+  + L   LG+RAVRKL  +G+ +T  RVSTV  G YL  + + +       G+P GG
Sbjct:  143 LDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRL--LKPKRKERETDRPPLQDVPIAVSNDRLEELLGERAVRKLLGEGHTLTGLRVSTVFLGDYLPSKRSKKPPTRANLGIPEGG 294
[Close]
BLAST of mRNA_H-paniculata_contig10781.496.1 vs. uniprot
Match: A0A6H5KH00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH00_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 3.430e-28
Identity = 71/154 (46.10%), Postives = 93/154 (60.39%), Query Frame = 2 
Query:  386 LGVAAFAIFKKKITSVLRSFPRRNGDKMPVMSDTVEVIRAAFQSSFTPSPIKASFEGAGLWPVDMHRALNRLRGCGPKRPALQGDRPPLAGVPVAIRKNVLVAALGDRAVRKLQVQGYAITRFRVSTVMFGGYLKHREATRH------GVPAGG 829
            L VA F  FKK++T  +++FP  +G  +P   D   VI  A+ +SFTP   KASF GAGLWPVD  RAL+RL    PKR   + DRPPL  VP+A+  + L   LG+RAVRKL  +G+ +T  RVSTV  G YL  + + +       G+P GG
Sbjct:  244 LDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRL--LKPKRKERETDRPPLQDVPIAVSNDRLEELLGERAVRKLLGEGHTLTGLRVSTVFLGDYLPSKRSKKPPTRANLGIPEGG 395
[Close]
BLAST of mRNA_H-paniculata_contig10781.496.1 vs. uniprot
Match: A0A6H5KGL1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL1_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 5.720e-28
Identity = 70/156 (44.87%), Postives = 93/156 (59.62%), Query Frame = 2 
Query:  386 LGVAAFAIFKKKITSVLRSFPRRNGDKMPVMSDTVEVIRAAFQSSFTPSPIKASFEGAGLWPVDMHRALNRLRGCGPKRPALQGDRPPLAGVPVAIRKNVLVAALGDRAVRKLQVQGYAITRFRVSTVMFGGYLKHREATRH--------GVPAGG 829
            L V AF  FKK++T VL+ +   NG  +P+  D   VI AA+Q+S TP   KASF GAGLWPVDM RAL RL+G   ++    G RPPL  VP+A+    L  A+G+R +R+L+  G+ IT  +V TVM GG L  R+  +         G+P GG
Sbjct:  138 LDVVAFGTFKKEVTKVLQDYYHANGGLLPLKRDVPGVIAAAWQNSLTPERNKASFGGAGLWPVDMDRALTRLQGTAKRKEGPTG-RPPLEDVPIAMTHEQLEEAIGERGLRQLKAGGHTITGLKVGTVMLGGLLTRRKRAKKLATLRGSLGLPDGG 292
[Close]
BLAST of mRNA_H-paniculata_contig10781.496.1 vs. uniprot
Match: A0A6H5JS97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS97_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 7.140e-28
Identity = 71/154 (46.10%), Postives = 93/154 (60.39%), Query Frame = 2 
Query:  386 LGVAAFAIFKKKITSVLRSFPRRNGDKMPVMSDTVEVIRAAFQSSFTPSPIKASFEGAGLWPVDMHRALNRLRGCGPKRPALQGDRPPLAGVPVAIRKNVLVAALGDRAVRKLQVQGYAITRFRVSTVMFGGYLKHREATRH------GVPAGG 829
            L VA F  FKK++T  +++FP  +G  +P   D   VI  A+ +SFTP   KASF GAGLWPVD  RAL+RL    PKR   + DRPPL  VP+A+  + L   LG+RAVRKL  +G+ +T  RVSTV  G YL  + + +       G+P GG
Sbjct:  324 LDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRL--LKPKRKERETDRPPLQDVPIAVSNDRLEELLGERAVRKLLGEGHTLTGLRVSTVFLGDYLPSKRSKKPPTRANLGIPEGG 475
[Close]
BLAST of mRNA_H-paniculata_contig10781.496.1 vs. uniprot
Match: A0A6H5KET0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KET0_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 9.040e-27
Identity = 70/175 (40.00%), Postives = 100/175 (57.14%), Query Frame = 2 
Query:  344 SVRASVTLIMPHPA-----LGVAAFAIFKKKITSVLRSFPRRNGDKMPVMSDTVEVIRAAFQSSFTPSPIKASFEGAGLWPVDMHRALNRLRGCGPKRPALQGDRPPLAGVPVAIRKNVLVAALGDRAVRKLQVQGYAITRFRVSTVMFGGYLKHREATRH--------GVPAGG 829
            ++  ++ L++ H +     L V AF  FKK++T  L+ +   NG  +P+  D  +VI AA+Q SFTP   KASF GAGLWPVDM RAL RL+G   ++    G RPPL  VP+A+    L  A+ +R +R+L+  G+  T  +V TVM GG L  R+  +         G+P GG
Sbjct:  148 AMELNIILLLSHTSHITQPLDVVAFGTFKKEVTKALQDYYHANGGLLPLKRDVPDVIAAAWQKSFTPERNKASFGGAGLWPVDMDRALTRLQGTAKRKEGPTG-RPPLEDVPIAMTHEQLEEAIRERGLRQLKAGGHTTTGLKVGTVMLGGLLTQRKRAKKLATSRGSLGLPDGG 321
[Close]
BLAST of mRNA_H-paniculata_contig10781.496.1 vs. uniprot
Match: A0A6H5JKQ8_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ8_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 5.330e-26
Identity = 69/154 (44.81%), Postives = 91/154 (59.09%), Query Frame = 2 
Query:  386 LGVAAFAIFKKKITSVLRSFPRRNGDKMPVMSDTVEVIRAAFQSSFTPSPIKASFEGAGLWPVDMHRALNRLRGCGPKRPALQGDRPPLAGVPVAIRKNVLVAALGDRAVRKLQVQGYAITRFRVSTVMFGGYLKHREATRH------GVPAGG 829
            L VA F  FK ++T  +++F   +G  +P   D   VI  A+ +SFTP   KASF GAGLWPVD  RAL+RL    PKR   + DRPPL  VP+A+  + L   LG+RAVRKL  +G+ +T  RVSTV  G YL  + + +       G+ AGG
Sbjct:  200 LDVAGFGCFKNELTKAIQAFLATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRL--LKPKRKERETDRPPLQDVPIAVSNDRLEELLGERAVRKLLGEGHTLTGLRVSTVFLGDYLPSKRSKKPPTRANLGILAGG 351
[Close]
BLAST of mRNA_H-paniculata_contig10781.496.1 vs. uniprot
Match: A0A6H5K828_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K828_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.030e-25
Identity = 63/142 (44.37%), Postives = 85/142 (59.86%), Query Frame = 2 
Query:  398 AFAIFKKKITSVLRSFPRRNGDKMPVMSDTVEVIRAAFQSSFTPSPIKASFEGAGLW-----PVDMHRALNRLRGCGPKRPALQGDRPPLAGVPVAIRKNVLVAALGDRAVRKLQVQGYAITRFRVSTVMFGGYLKHREATR 808
            AF  FKK+++ VL+ +   NG  +P+  D   VI AA+Q S TP   KASF GAGLW     PVDM RAL RL+G   ++    G RPPL  VP+A+    L  A+G+R +R+L+  G+ IT  +V TVM GG L  R+  +
Sbjct:   13 AFGTFKKEVSKVLQDYYHANGGLLPLKRDVPGVIAAAWQKSLTPERNKASFGGAGLWXAGLWPVDMDRALTRLQGTAKRKEGPTG-RPPLEDVPIAMSHEQLEEAIGERGLRQLKAGGHTITGLKVGTVMLGGLLTQRKCAK 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10781.496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9Z8_9PHAE2.870e-2946.10DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KS78_9PHAE4.490e-2946.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYX7_9PHAE6.810e-2947.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE34_9PHAE1.810e-2846.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH00_9PHAE3.430e-2846.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGL1_9PHAE5.720e-2844.87DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JS97_9PHAE7.140e-2846.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KET0_9PHAE9.040e-2740.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JKQ8_9PHAE5.330e-2644.81DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K828_9PHAE1.030e-2544.37Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10781contigH-paniculata_contig10781:441..2244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue3e-11
Seed eggNOG ortholog2880.D8LN28
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2CZS4@1,2SBGG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1444
Cds size729
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10781.496.1prot_H-paniculata_contig10781.496.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10781 786..1514 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928781.2281573-UTR-H-paniculata_contig10781:440..7851622928781.2281573-UTR-H-paniculata_contig10781:440..785Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10781 441..785 -
1691480617.564712-UTR-H-paniculata_contig10781:440..7851691480617.564712-UTR-H-paniculata_contig10781:440..785Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10781 441..785 -
1622928781.2646446-UTR-H-paniculata_contig10781:1514..18081622928781.2646446-UTR-H-paniculata_contig10781:1514..1808Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10781 1515..1808 -
1691480617.58456-UTR-H-paniculata_contig10781:1514..18081691480617.58456-UTR-H-paniculata_contig10781:1514..1808Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10781 1515..1808 -
1622928781.2800772-UTR-H-paniculata_contig10781:2168..22441622928781.2800772-UTR-H-paniculata_contig10781:2168..2244Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10781 2169..2244 -
1691480617.5913956-UTR-H-paniculata_contig10781:2168..22441691480617.5913956-UTR-H-paniculata_contig10781:2168..2244Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10781 2169..2244 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928781.2416213-CDS-H-paniculata_contig10781:785..15141622928781.2416213-CDS-H-paniculata_contig10781:785..1514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10781 786..1514 -
1691480617.5753098-CDS-H-paniculata_contig10781:785..15141691480617.5753098-CDS-H-paniculata_contig10781:785..1514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10781 786..1514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10781.496.1

>prot_H-paniculata_contig10781.496.1 ID=prot_H-paniculata_contig10781.496.1|Name=mRNA_H-paniculata_contig10781.496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=243bp
MPHPALGVAAFAIFKKKITSVLRSFPRRNGDKMPVMSDTVEVIRAAFQSS
FTPSPIKASFEGAGLWPVDMHRALNRLRGCGPKRPALQGDRPPLAGVPVA
IRKNVLVAALGDRAVRKLQVQGYAITRFRVSTVMFGGYLKHREATRHGVP
AGGGGRGVPARGGGCGVAVLGCGRVAPATQVSRGAVATGGGRGMSHALVG
GSGAGVDGRVNQRVREAGPPLPPSKRPGGDCCCCSHCLNPTV*
back to top

mRNA from alignment at H-paniculata_contig10781:441..2244-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10781.496.1 ID=mRNA_H-paniculata_contig10781.496.1|Name=mRNA_H-paniculata_contig10781.496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1804bp|location=Sequence derived from alignment at H-paniculata_contig10781:441..2244- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGACCTGGCTGCCTCTACAGTAGGAGCATAAAAGCCCCTACCGGACTCC
GTTTTACTCCTGTCATCCAACCCAAGGTGGTCGAGAATTAACCTTACGCG
GTCTTCCATTCTCGTGAATTCCCCTTGGTTATAAGTCGAAGAGTCTCCTC
TGACATCTTCATTGAACTATCGGTAGAAAAACTAGTGTATTAGATCATTC
CTAGGCTTCTGCAGCCTATCGACTTCTTTATTACAGGTCCCGTTTAGGGA
AACAGATGTGAGTGAGACAAAGGGGGGCTCAACCCTCCAGCCAGACACGG
GCTGTAGTAGCCGGCAATCGGCTGCACCAAAATACAGACAGACCCGAACC
AGATCAACAAGAACATGATTCTATATAACTGTCAAATCTGTTCCAAAAAC
GCCCACAGCTGATACCCTAGCATGGCATCACAACAGTTGATCTCTCACCC
AGTTCTTCATCCCTGATGGGTGAACAACACACTCGAACATGGGTCCAGGG
CGGGGTCCATCGCGTGCATTGTACGCTTCAACCGAGTCGTCGTTCATGCA
GGAATCCATGTTCGTGAGCTACATAAAGGCTTTCCACAAGCACATCGTGG
ACACCGGGAAGGATGACGGGAAGCCGCACGTGCTCGTGCTCGATGGGGAC
GCCTCCCACCTCACCTTCGACGTGATTAAGTTGGCGATGTCGCTCAAAAT
TGTTCTGTTCGAGCTTCCGTCACACTCATCATGCCTCACCCAGCCCTAGG
CGTCGCCGCGTTCGCAATTTTCAAAAAGAAAATTACGTCAGTACTACGGT
CGTTCCCACGCCGTAACGGCGACAAGATGCCGGTGATGTCGGACACGGTC
GAGGTGATCAGAGCCGCATTTCAGTCAAGTTTCACGCCTTCACCGATCAA
GGCATCATTTGAGGGAGCCGGCCTGTGGCCTGTGGACATGCACCGGGCTC
TGAACAGGCTACGCGGTTGTGGTCCGAAACGACCAGCGCTGCAGGGGGAT
CGGCCACCTTTGGCGGGCGTACCTGTGGCGATAAGGAAGAATGTGCTCGT
TGCTGCTCTCGGTGATCGTGCAGTGCGCAAGCTCCAAGTTCAAGGCTACG
CGATTACTAGATTTCGAGTTAGTACGGTCATGTTCGGCGGGTACCTGAAG
CACCGAGAAGCCACGAGGCATGGGGTGCCTGCAGGAGGAGGTGGGCGTGG
GGTGCCTGCGAGAGGAGGCGGATGCGGGGTGGCCGTCTTAGGATGTGGAA
GGGTCGCACCGGCTACACAAGTTAGCCGCGGTGCAGTTGCTACAGGAGGT
GGGCGTGGGATGTCTCATGCTCTGGTGGGTGGATCGGGTGCGGGAGTAGA
TGGCCGGGTGAATCAGCGCGTACGTGAGGCTGGCCCGCCCTTACCACCTT
CGAAACGCCCGGGGGGCGACTGCTGCTGCTGCTCTCACTGTCTAAATCCG
ACTGTATGAATGCCTGCTCTATACCGAAGTGACTCATGTCCCAGTCAAGC
TTACAAGCCATTAGCTAGCTTTTGATATGCTTTAACGCTTATGTGCTTCC
GGCTGGGGATTTCACGAAGTTTCGTTGTTTGGTTAGCTCTGCTTTGTGCA
CGCTGCTGCCTGCGGGCTGCGTCTGCCATTTTCGCAGTTGTTGGCGATTT
TTGTTGAAAAATGGGTGTCTGAGGGGGGGGTCAGTTAACGTGCGTTAAAG
TAACTGAATCACATTCAATGAACACCAAATTTTTGGAAATATTTGTCAAA
ACTAGTTCCAATCGTGTCTCTCTCTCTCTATATATATATATATGTACATG
TAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig10781:441..2244-

>mRNA_H-paniculata_contig10781.496.1 ID=mRNA_H-paniculata_contig10781.496.1|Name=mRNA_H-paniculata_contig10781.496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1458bp|location=Sequence derived from alignment at H-paniculata_contig10781:441..2244- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTCACCCAGCCCTAGGCGTCGCCGCGTTCGCAATTTTCAAAAAGAA
AATTACGTCAGTACTACGGTCGTTCCCACGCCGTAACGGCGACAAGATGC
CGGTGATGTCGGACACGGTCGAGGTGATCAGAGCCGCATTTCAGTCAAGT
TTCACGCCTTCACCGATCAAGGCATCATTTGAGGGAGCCGGCCTGTGGCC
TGTGGACATGCACCGGGCTCTGAACAGGCTACGCGGTTGTGGTCCGAAAC
GACCAGCGCTGCAGGGGGATCGGCCACCTTTGGCGGGCGTACCTGTGGCG
ATAAGGAAGAATGTGCTCGTTGCTGCTCTCGGTGATCGTGCAGTGCGCAA
GCTCCAAGTTCAAGGCTACGCGATTACTAGATTTCGAGTTAGTACGGTCA
TGTTCGGCGGGTACCTGAAGCACCGAGAAGCCACGAGGCATGGGGTGCCT
GCAGGAGGAGGTGGGCGTGGGGTGCCTGCGAGAGGAGGCGGATGCGGGGT
GGCCGTCTTAGGATGTGGAAGGGTCGCACCGGCTACACAAGTTAGCCGCG
GTGCAGTTGCTACAGGAGGTGGGCGTGGGATGTCTCATGCTCTGGTGGGT
GGATCGGGTGCGGGAGTAGATGGCCGGGTGAATCAGCGCGTACGTGAGGC
TGGCCCGCCCTTACCACCTTCGAAACGCCCGGGGGGCGACTGCTGCTGCT
GCTCTCACTGTCTAAATCCGACTGTATGAATGCCTCACCCAGCCCTAGGC
GTCGCCGCGTTCGCAATTTTCAAAAAGAAAATTACGTCAGTACTACGGTC
GTTCCCACGCCGTAACGGCGACAAGATGCCGGTGATGTCGGACACGGTCG
AGGTGATCAGAGCCGCATTTCAGTCAAGTTTCACGCCTTCACCGATCAAG
GCATCATTTGAGGGAGCCGGCCTGTGGCCTGTGGACATGCACCGGGCTCT
GAACAGGCTACGCGGTTGTGGTCCGAAACGACCAGCGCTGCAGGGGGATC
GGCCACCTTTGGCGGGCGTACCTGTGGCGATAAGGAAGAATGTGCTCGTT
GCTGCTCTCGGTGATCGTGCAGTGCGCAAGCTCCAAGTTCAAGGCTACGC
GATTACTAGATTTCGAGTTAGTACGGTCATGTTCGGCGGGTACCTGAAGC
ACCGAGAAGCCACGAGGCATGGGGTGCCTGCAGGAGGAGGTGGGCGTGGG
GTGCCTGCGAGAGGAGGCGGATGCGGGGTGGCCGTCTTAGGATGTGGAAG
GGTCGCACCGGCTACACAAGTTAGCCGCGGTGCAGTTGCTACAGGAGGTG
GGCGTGGGATGTCTCATGCTCTGGTGGGTGGATCGGGTGCGGGAGTAGAT
GGCCGGGTGAATCAGCGCGTACGTGAGGCTGGCCCGCCCTTACCACCTTC
GAAACGCCCGGGGGGCGACTGCTGCTGCTGCTCTCACTGTCTAAATCCGA
CTGTATGA
back to top