mRNA_H-paniculata_contig10780.495.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10780.495.1
Unique NamemRNA_H-paniculata_contig10780.495.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10780.495.1 vs. uniprot
Match: D7FU11_ECTSI (BRO1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU11_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.060e-12
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = 3 
Query:   75 SELSPNLLKVVTHVYRFPLPATKMIAFTKCFERNMGADETQKTI 206
            SELSP LLKV THVYRFPLPATK+IAFTKCF  N+GA+ET K I
Sbjct:    7 SELSPALLKVATHVYRFPLPATKVIAFTKCFADNLGAEETSKAI 50
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BLAST of mRNA_H-paniculata_contig10780.495.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.070e-10
Identity = 34/92 (36.96%), Postives = 55/92 (59.78%), Query Frame = -1 
Query:  208 SLSLTHRKNRVDFILDQAPRNRITCRSGFQTIHIEDAWTYLIRDKDRVRMFPGEERVGST*PYSTSHIPKVMFICAVSRPDLSRYFDGRSRI 483
            SLS   +++R+DFI D+              +H++++W YL+R+K++VR+F GE+  G       SH+PK+M I A +RPD +  FDG+  I
Sbjct:  124 SLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGI 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10780.495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU11_ECTSI1.060e-1279.55BRO1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JIM0_9PHAE1.070e-1036.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10780contigH-paniculata_contig10780:6442..7996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue1.4e-11
Seed eggNOG ortholog2880.D7FU11
Hectar predicted targeting categoryother localisation
EggNOG free text desc.BRO1-like domain
EggNOG OGs2E3RK@1,2SAS3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size492
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10780.495.1prot_H-paniculata_contig10780.495.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10780 6668..7934 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928781.1495402-UTR-H-paniculata_contig10780:6441..66671622928781.1495402-UTR-H-paniculata_contig10780:6441..6667Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10780 6442..6667 -
1691480617.5305107-UTR-H-paniculata_contig10780:6441..66671691480617.5305107-UTR-H-paniculata_contig10780:6441..6667Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10780 6442..6667 -
1622928781.1951337-UTR-H-paniculata_contig10780:7934..79961622928781.1951337-UTR-H-paniculata_contig10780:7934..7996Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10780 7935..7996 -
1691480617.5564191-UTR-H-paniculata_contig10780:7934..79961691480617.5564191-UTR-H-paniculata_contig10780:7934..7996Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10780 7935..7996 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928781.1610777-CDS-H-paniculata_contig10780:6667..67251622928781.1610777-CDS-H-paniculata_contig10780:6667..6725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10780 6668..6725 -
1691480617.540454-CDS-H-paniculata_contig10780:6667..67251691480617.540454-CDS-H-paniculata_contig10780:6667..6725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10780 6668..6725 -
1622928781.1776085-CDS-H-paniculata_contig10780:7788..79341622928781.1776085-CDS-H-paniculata_contig10780:7788..7934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10780 7789..7934 -
1691480617.548349-CDS-H-paniculata_contig10780:7788..79341691480617.548349-CDS-H-paniculata_contig10780:7788..7934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10780 7789..7934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10780.495.1

>prot_H-paniculata_contig10780.495.1 ID=prot_H-paniculata_contig10780.495.1|Name=mRNA_H-paniculata_contig10780.495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MAESSELSPNLLKVVTHVYRFPLPATKMIAFTKCFERNMGADETQKTIRF
YSCRRNSGKDLDAKRRR*
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mRNA from alignment at H-paniculata_contig10780:6442..7996-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10780.495.1 ID=mRNA_H-paniculata_contig10780.495.1|Name=mRNA_H-paniculata_contig10780.495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1555bp|location=Sequence derived from alignment at H-paniculata_contig10780:6442..7996- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGTACAGACGCTGCGAGAGTGTAGCATAAGCTGACTAACTCCCCTAGT
GCACGGTGAGAAATGGCGGAATCCTCTGAATTGTCTCCCAACTTGCTGAA
GGTGGTGACGCATGTATACCGCTTCCCGCTCCCAGCCACGAAGATGATCG
CATTCACCAAGTGCTTCGAGCGGAACATGGGAGCTGATGAGACTCAAAAG
ACTATTAGGTAACTGTGTAAGCATACCGCTATGCTGTATGTATCTGAAAG
TTTCGATGTGCCTAGCGTGCGCGTGCTGTCCACTTAGAGCTGATGTTTTA
CTGCGCACTGCATTTTGCCATAGGTCTTGTTCTGTGATGACTGCGGTATT
CATGCATCTCCAGTCTCGACGTGCGGGGAATAGAAAGACGAAGAACATTG
AACATTGGTCACTCATTCAGCAGCACATTCAATAATCTAAGTTATATATT
TCAGGCAGTGTTGGTATTGGAGAATGATTTCGCCGAACGCTTCGTCTGCT
ACTTGGTGAAGAGAACCCGGCGAGTAGACTCTGCCGTAGGGCGCTGTCAG
AACGTCTCGGGGCCGATTTCTCGTCAGCACCGATTTTCTCGAAATCGTTT
TTTTGTGTCGGAGTCCTTGGTGTTTTTCACGTCATTTTTATTCTTCGCAG
CTCTCCTCGTTCCCATCAATCCACCATTCTACCGCCGCGTCGAAAGCCTC
TCGCTCGATTTTGACCAATTTTAGCAGACTTCCCGTACTCTGCCCTTCTT
AGTTTCGGTGTGCTGTACCTCGAAATCGTTACCTCCTACCGCCTTCAAGA
CCTGATTGTACGGCGTAAATAGGCTCTGCCACACCCCCTCTAAGGTTGCC
GCGTCGTACGCATCATACATGCTCTTCACCCTCCACAAGGCCGTCTATCG
TACCGTTACGCTCCCTCCAAATCCTACTTTTCAGAGATGCAAAGAATCCC
AAATCGTCGATGTTAAGATCTGGTGACGAGCATGCTGAGTCACGAGATTG
ACGTCACACCCACAGTCCCTCCCAAGTTCGTCGCGCTTCCGCGGCGTGTC
TTTTCCCGTGTGGGGGGTCGCTCCGTCCTCTTGCCGGAGCACTTCCTGAA
CCTCCAACCACGGCATCTTTTCCTTCAATGCTGGGAGAAAGAGTCCTTGT
ACCACTCCTTGAACCACTCCTGGTACCGCTCGAGATCAATGGTCACGTCG
AACTCGTATTGCTGCCCCCGTTCACGCCGTGCCGATTCCTCTGCGCCTGC
TTGATGACGCAAACACGCCAGATTCTACTCCTGCCGTCGAAATAGCGGGA
AAGATCTGGACGCGAAACGGCGCAGATGAACATCACCTTAGGAATGTGAC
TTGTGCTGTAGGGTTAGGTGGATCCCACCCTTTCCTCCCCGGGGAACATG
CGGACGCGATCCTTGTCGCGAATTAGGTAAGTCCAAGCGTCTTCGATGTG
AATGGTTTGGAAGCCGCTCCTGCAGGTGATGCGGTTTCTTGGCGCTTGAT
CCAGGATGAAGTCTACCCGGTTCTTTCGGTGTGTCAGCGACAAAGATAGA
GGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig10780:6442..7996-

>mRNA_H-paniculata_contig10780.495.1 ID=mRNA_H-paniculata_contig10780.495.1|Name=mRNA_H-paniculata_contig10780.495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig10780:6442..7996- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGAATCCTCTGAATTGTCTCCCAACTTGCTGAAGGTGGTGACGCA
TGTATACCGCTTCCCGCTCCCAGCCACGAAGATGATCGCATTCACCAAGT
GCTTCGAGCGGAACATGGGAGCTGATGAGACTCAAAAGACTATTAGATGG
CGGAATCCTCTGAATTGTCTCCCAACTTGCTGAAGGTGGTGACGCATGTA
TACCGCTTCCCGCTCCCAGCCACGAAGATGATCGCATTCACCAAGTGCTT
CGAGCGGAACATGGGAGCTGATGAGACTCAAAAGACTATTAGATTCTACT
CCTGCCGTCGAAATAGCGGGAAAGATCTGGACGCGAAACGGCGCAGATGA
ATTCTACTCCTGCCGTCGAAATAGCGGGAAAGATCTGGACGCGAAACGGC
GCAGATGA
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