mRNA_H-paniculata_contig1078.493.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1078.493.1
Unique NamemRNA_H-paniculata_contig1078.493.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1078.493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1078contigH-paniculata_contig1078:3512..4213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size204
Cds size198
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1078.493.1prot_H-paniculata_contig1078.493.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1078 3512..4208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928781.0197315-CDS-H-paniculata_contig1078:3511..36311622928781.0197315-CDS-H-paniculata_contig1078:3511..3631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1078 3512..3631 -
1691480617.4725864-CDS-H-paniculata_contig1078:3511..36311691480617.4725864-CDS-H-paniculata_contig1078:3511..3631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1078 3512..3631 -
1622928781.0328646-CDS-H-paniculata_contig1078:4130..42081622928781.0328646-CDS-H-paniculata_contig1078:4130..4208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1078 4131..4208 -
1691480617.4820678-CDS-H-paniculata_contig1078:4130..42081691480617.4820678-CDS-H-paniculata_contig1078:4130..4208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1078 4131..4208 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928781.0457149-UTR-H-paniculata_contig1078:4208..42131622928781.0457149-UTR-H-paniculata_contig1078:4208..4213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1078 4209..4213 -
1691480617.4903805-UTR-H-paniculata_contig1078:4208..42131691480617.4903805-UTR-H-paniculata_contig1078:4208..4213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1078 4209..4213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1078.493.1

>prot_H-paniculata_contig1078.493.1 ID=prot_H-paniculata_contig1078.493.1|Name=mRNA_H-paniculata_contig1078.493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MGPLGVPVVKDVQSGSRKDRKAAHDEATADTGYRESPSKVEGTVGISHGS
GAAVVASSVQAGAGGA
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mRNA from alignment at H-paniculata_contig1078:3512..4213-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1078.493.1 ID=mRNA_H-paniculata_contig1078.493.1|Name=mRNA_H-paniculata_contig1078.493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=702bp|location=Sequence derived from alignment at H-paniculata_contig1078:3512..4213- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGATGGGACCGCTAGGTGTTCCTGTGGTCAAAGATGTTCAATCCGGC
AGCCGGAAAGATCGGAAAGCTGCTCACGACGAGGTATTCCTTTTTGTGCA
TATCTTTGGCTAAACATTTTAGCATCTATAACCATGGTACTTTGAGTCTG
AGTTCCGCGGCACATCGCAGCACAACCATTCACGAGCTGATCAAGACACA
GACTCGTGGAATGTAAATCCCCAGGAATTCCTGATGAGGTACACATATGC
ATCTGGATACATAGTTCTATACGGGTACGCATTTTCGTACTGCAGCGAGT
ATAGAATATACAGGTACCATGACCACGATGGGGAGGGTAGATTTCGCGAC
GACCTCCGGCGAGTGTATAGCTCAACTGCATCGGATTTTTCGAGCGTGCT
CCATTCTTCGGGAGAAACAGTCTCGCGTTTTATTCTCCATCCTCTCTCAA
AACATTTTCACCGGTGGTAGGCCTGACCACTTTAATTTGAAGCCGCTCGT
CTTTACAGGTTTTTTGTCCTCTGGCCGTATTTCCTTACCATCGAACCGCG
TGTACTTACGGGACAACGTGCCCCCATTCCAGGCCACTGCTGACACTGGC
TATCGTGAATCACCATCGAAAGTGGAAGGCACTGTTGGGATTAGTCACGG
ATCGGGAGCTGCGGTGGTCGCATCGTCTGTGCAAGCGGGGGCCGGAGGGG
CT
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Coding sequence (CDS) from alignment at H-paniculata_contig1078:3512..4213-

>mRNA_H-paniculata_contig1078.493.1 ID=mRNA_H-paniculata_contig1078.493.1|Name=mRNA_H-paniculata_contig1078.493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig1078:3512..4213- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGACCGCTAGGTGTTCCTGTGGTCAAAGATGTTCAATCCGGCAGCCG
GAAAGATCGGAAAGCTGCTCACGACGAGATGGGACCGCTAGGTGTTCCTG
TGGTCAAAGATGTTCAATCCGGCAGCCGGAAAGATCGGAAAGCTGCTCAC
GACGAGGCCACTGCTGACACTGGCTATCGTGAATCACCATCGAAAGTGGA
AGGCACTGTTGGGATTAGTCACGGATCGGGAGCTGCGGTGGTCGCATCGT
CTGTGCAAGCGGGGGCCGGAGGGGCTGCCACTGCTGACACTGGCTATCGT
GAATCACCATCGAAAGTGGAAGGCACTGTTGGGATTAGTCACGGATCGGG
AGCTGCGGTGGTCGCATCGTCTGTGCAAGCGGGGGCCGGAGGGGCT
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