mRNA_H-paniculata_contig1078.492.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1078.492.1
Unique NamemRNA_H-paniculata_contig1078.492.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1078.492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1078contigH-paniculata_contig1078:1872..3313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size279
Cds size279
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1078.492.1prot_H-paniculata_contig1078.492.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1078 1872..3313 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928780.8898995-CDS-H-paniculata_contig1078:1871..19741622928780.8898995-CDS-H-paniculata_contig1078:1871..1974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1078 1872..1974 -
1691480617.4213214-CDS-H-paniculata_contig1078:1871..19741691480617.4213214-CDS-H-paniculata_contig1078:1871..1974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1078 1872..1974 -
1622928780.950669-CDS-H-paniculata_contig1078:2662..27791622928780.950669-CDS-H-paniculata_contig1078:2662..2779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1078 2663..2779 -
1691480617.4351492-CDS-H-paniculata_contig1078:2662..27791691480617.4351492-CDS-H-paniculata_contig1078:2662..2779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1078 2663..2779 -
1622928780.9693491-CDS-H-paniculata_contig1078:3254..33131622928780.9693491-CDS-H-paniculata_contig1078:3254..3313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1078 3255..3313 -
1691480617.4580064-CDS-H-paniculata_contig1078:3254..33131691480617.4580064-CDS-H-paniculata_contig1078:3254..3313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1078 3255..3313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1078.492.1

>prot_H-paniculata_contig1078.492.1 ID=prot_H-paniculata_contig1078.492.1|Name=mRNA_H-paniculata_contig1078.492.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
AEESRDDARLQKEREQLHKRFEQEDKVAKTIENQRLLKEAEEARKMVTAR
KDAEAARLREEEIRDNARVERERVELERKLVLMERMGGNMRV*
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mRNA from alignment at H-paniculata_contig1078:1872..3313-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1078.492.1 ID=mRNA_H-paniculata_contig1078.492.1|Name=mRNA_H-paniculata_contig1078.492.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1442bp|location=Sequence derived from alignment at H-paniculata_contig1078:1872..3313- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGAAGAAAGTAGGGATGATGCGAGGCTCCAGAAGGAGAGGGAGCAGCT
GCACAAAAGGTTTGCTGTGTTTGGCTTGCTTGCTTTTCACGCTCAATGGC
TTCGTGTTGTTCTGTTCGTGGCCAAGTTGCAGCATGCAGCACCACATAGC
ATTGTAACGCAATCACCAGCACACCGATTATGTCCGTGGTTTGCTGGAGT
TGTCGGGAGACTTTGTGTGGAACACAATCTTCTGGGAAACTGTCATGACC
AACGCCAACATAGACTGCCGCACGAAGCTTGCGTTCCATTTCAATCGTCT
CTTCTGCATGCCCCATTTACCACTCTCAAAATATGGGGCTACAAAAACAT
CACCCATTTCGCTGATGCTCCACGTGTGCCTAGAATCGCTTCTTGTGAAA
CCTTGCAGGATCATGACTTGCGGCAACATGTCTGCTCAACACTTCATACC
GGAAATCGGGCAAAGGTAACTTTTCTGCCAATCCCCTTGTGTACTTACTT
ACCGTTGCAACCCTGACCTTGCACCGGATACCAGGTTTGAGCAAGAAGAC
AAGGTGGCTAAAACCATCGAGAACCAGCGGCTATTGAAGGAGGCCGAGGA
AGCGCGAAAGATGGTGACCGCTCGAAAGGACGCCGAAGCCGCGAGACTAA
GGTACGGTAACGTAGACATGGAGCTCTCCTTTAGTACTTTCTTGCGTTTT
ACCGGAATTCGCAAGGTCGTACGTGGCCGTAAAGTCCAAGAGCCATAGCG
AACATCGAGCGGAGATGCTGCCAGCAACAGCATTATCGAGCACTTCTGGT
CTTGCAGTGTTTGTTGTTGTGAATATTGAGCAAAATCTTGATGGCACGTT
GTGAATGTTCAGATTGAGAATCCTGGTAATTCCTGTAGTTGATCTCCGTT
GTTGAAGAGTACAGCGTAGTAAAATTCATCTGTGTATATGTAATACCACC
ATCAGGCATGTGAGTGTCTCGACGGACGGCGAGCAAACAGCAGGGAAATA
CTACACGCACATGGCTAAAACTCTGACAAAAAAACGCCTCAAATATCTTC
TGGCCGAAATTTATCCAATATTTTTCTGTTTAGATTCAAGTCATGAAGAC
AGCGAAACTTTTAACCTCGTCAAGGGCATTGACAACTGCGTGTCTGCGCT
GGTGTGATAGCTTTACGTTTCCAGACGAGAAAGGCCTGCCTTAAAACGAC
AGTGATCTGAGGCCTTGGGCAAACGGCACTTAATATATTCGCATGTCGAC
TACGTCTATGGGACCCACAGCTCACCACTTTAACGACGTTTGTTTTGTCG
CGTATTTGGTGCCTGTTTGCGACTACCGCCTTTTCATAGGGAGGAAGAGA
TTCGAGACAACGCCCGAGTCGAGCGAGAGAGAGTAGAGTTGGAGAGAAAG
TTAGTACTCATGGAACGAATGGGGGGAAATATGAGGGTATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1078:1872..3313-

>mRNA_H-paniculata_contig1078.492.1 ID=mRNA_H-paniculata_contig1078.492.1|Name=mRNA_H-paniculata_contig1078.492.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig1078:1872..3313- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGAAGAAAGTAGGGATGATGCGAGGCTCCAGAAGGAGAGGGAGCAGCT
GCACAAAAGGCAGAAGAAAGTAGGGATGATGCGAGGCTCCAGAAGGAGAG
GGAGCAGCTGCACAAAAGGTTTGAGCAAGAAGACAAGGTGGCTAAAACCA
TCGAGAACCAGCGGCTATTGAAGGAGGCCGAGGAAGCGCGAAAGATGGTG
ACCGCTCGAAAGGACGCCGAAGCCGCGAGACTAAGGTTTGAGCAAGAAGA
CAAGGTGGCTAAAACCATCGAGAACCAGCGGCTATTGAAGGAGGCCGAGG
AAGCGCGAAAGATGGTGACCGCTCGAAAGGACGCCGAAGCCGCGAGACTA
AGGGAGGAAGAGATTCGAGACAACGCCCGAGTCGAGCGAGAGAGAGTAGA
GTTGGAGAGAAAGTTAGTACTCATGGAACGAATGGGGGGAAATATGAGGG
TATAGGGAGGAAGAGATTCGAGACAACGCCCGAGTCGAGCGAGAGAGAGT
AGAGTTGGAGAGAAAGTTAGTACTCATGGAACGAATGGGGGGAAATATGA
GGGTATAG
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