mRNA_H-paniculata_contig10774.489.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10774.489.1
Unique NamemRNA_H-paniculata_contig10774.489.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10774.489.1 vs. uniprot
Match: D7FM35_ECTSI (tRNA-dihydrouridine synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM35_ECTSI)

HSP 1 Score: 376 bits (966), Expect = 5.970e-121
Identity = 183/227 (80.62%), Postives = 197/227 (86.78%), Query Frame = 1
Query:    1 DRYEELTGFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGIDNLGSVNDHILGRGEWGGYGGGVAGVMVGRACYFDPWTFRHTDSAVFGSPDPGLTRREIMEHCVDTFQEYMQEGQREGPERNRTRYHCLGTVLKPLGYLSSGARGSRKFRQELGRAVQVQSKIDPDADIFRDVVEAAMELMEPEILDEPVGDTPDAALGA 681
            D Y+ELT FVRAVKAAG+DHV+VHARKCLL GLSTSANRT+PPLRYDVVHRLA EFPELEIVLNGGID+LG+VN+HI G GEWG YGGGVAGVMVGRA YFDPWTFRHTDSAVFGS DPG TRREIME CVD F E MQEG+REGPE NRTR+ CLGTV KPLGYLSSGARGSR FRQEL RAVQ QSKIDPD D FRD V+ AM L+   +LDEPVGDTP+ A G+
Sbjct:  148 DSYDELTTFVRAVKAAGIDHVVVHARKCLLKGLSTSANRTIPPLRYDVVHRLAQEFPELEIVLNGGIDSLGAVNEHITGTGEWGEYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGSSDPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKIDPDTDDFRDAVDRAMALLPEGVLDEPVGDTPECAFGS 374          
BLAST of mRNA_H-paniculata_contig10774.489.1 vs. uniprot
Match: G4ZWL3_PHYSP (Dus domain-containing protein n=25 Tax=Peronosporaceae TaxID=4777 RepID=G4ZWL3_PHYSP)

HSP 1 Score: 147 bits (370), Expect = 7.220e-35
Identity = 86/220 (39.09%), Postives = 125/220 (56.82%), Query Frame = 1
Query:    1 DRYEELTGFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGIDNLGSVNDHILGRGEWGGYGGGVAGVMVGRACYFDPWTFRHTDSAVFGSP-DPGLTRREIMEHCVDTFQEYMQEGQREGPERNRTRYHCLGTVLKPLGYLSSGARGSRKFRQELGRAVQVQSKIDPDADIFRDVVEAAMELMEPEILDEPVGD 657
            D YEEL  +V +V  AGV H+IVHARKCLL GLST  NRT+PPLRYDVV+RL  +FPEL   LNGG+ ++    + +            V GVM+GRA Y  PW FR  D  +F +  +P L+RREI+   +D  +    +     P  +         ++KPL  L +G  G + F++E+       +K  P  ++ R+++E+AM+++  E+LD  V D
Sbjct:  159 DSYEELHHYVSSVTEAGVRHIIVHARKCLLKGLSTKDNRTIPPLRYDVVYRLKQDFPELSFTLNGGVQSIQHARELLDTT--------NVDGVMIGRAAYNTPWNFRDADRLIFNAERNPNLSRREIIARYLDYAEGLQAKWGSTEPLSDSPYTMATSALMKPLLSLFNGEFGGKAFKREISAQ---WAKKGPRPEL-REMIESAMKVLPDEVLDARVED 366          
BLAST of mRNA_H-paniculata_contig10774.489.1 vs. uniprot
Match: H3GP67_PHYRM (Dus domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GP67_PHYRM)

HSP 1 Score: 145 bits (367), Expect = 1.150e-34
Identity = 85/220 (38.64%), Postives = 125/220 (56.82%), Query Frame = 1
Query:    1 DRYEELTGFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGIDNLGSVNDHILGRGEWGGYGGGVAGVMVGRACYFDPWTFRHTDSAVFGSP-DPGLTRREIMEHCVDTFQEYMQEGQREGPERNRTRYHCLGTVLKPLGYLSSGARGSRKFRQELGRAVQVQSKIDPDADIFRDVVEAAMELMEPEILDEPVGD 657
            D YEEL  FV  V +AGV H+IVHARKC+L GLST  NRT+PPLRYDVV++L  +FPEL   LNGG+ ++    + +            V GVM+GRA Y  PW FR  D  +F +  +P L+RREI+E  ++  +    +     P  +         ++KPL  L +G  G + F++E+       +K  P  ++ R+++E AM+++  E+LD  V D
Sbjct:  131 DSYEELHHFVATVASAGVRHIIVHARKCILKGLSTKDNRTIPPLRYDVVYQLKQDFPELSFTLNGGVQSIQHARELLDTT--------NVDGVMIGRAAYNTPWNFRDADRLIFNAERNPNLSRREIIERYLEYAENLQAKWGSTVPLGDSPYTMATSALMKPLLALFNGEIGGKAFKREISAQ---WAKKGPRPEL-REMIENAMKVLPDEVLDARVED 338          
BLAST of mRNA_H-paniculata_contig10774.489.1 vs. uniprot
Match: A0A484ECZ8_BRELC (Dus domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ECZ8_BRELC)

HSP 1 Score: 144 bits (364), Expect = 4.870e-34
Identity = 83/220 (37.73%), Postives = 125/220 (56.82%), Query Frame = 1
Query:    1 DRYEELTGFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGIDNLGSVNDHILGRGEWGGYGGGVAGVMVGRACYFDPWTFRHTDSAVFGSP-DPGLTRREIMEHCVDTFQEYMQEGQREGPERNRTRYHCLGTVLKPLGYLSSGARGSRKFRQELGRAVQVQSKIDPDADIFRDVVEAAMELMEPEILDEPVGD 657
            D YEEL  FV    +AGV H IVHARKCLL GLST  NRT+PPLRYDVV+RL  +FP+L   LNGG+ ++    + +              G+M+GRA Y +PW FR  D  +F +  +P L+RREI+E  ++  +E  ++     P            ++KPL  L +G  G + F++E+       +K  P  ++ R+++E A++++  ++LDE V D
Sbjct:  164 DSYEELHYFVATAASAGVRHFIVHARKCLLKGLSTKENRTIPPLRYDVVYRLKQDFPDLSFTLNGGVQSIQHARELLNTT--------NADGIMIGRAAYNNPWNFRDADRLIFDADRNPNLSRREIIERYLNYAEELQEKWGSNEPLSGSPYTMATSMLMKPLLSLFNGEFGGKAFKREVSAQ---WAKKGPRPEL-REMIENAIKVLPDKVLDERVED 371          
BLAST of mRNA_H-paniculata_contig10774.489.1 vs. uniprot
Match: A0A8K1CQW7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQW7_PYTOL)

HSP 1 Score: 143 bits (360), Expect = 9.130e-34
Identity = 91/223 (40.81%), Postives = 131/223 (58.74%), Query Frame = 1
Query:    1 DRYEELTGFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGIDNLGSVNDHILGRGEWGGYGGGVAGVMVGRACYFDPWTFRHTDSAVFG-SPDPGLTRREIMEHCVDTFQEYMQEGQREGPERNRTRYHCLGT--VLKPLGYLSSGARGSRKFRQELGRAVQVQ-SKIDPDADIFRDVVEAAMELMEPEILDEPVGD 657
            D YEEL  F+  V +AGV H IVHARKCLLNGLST  NRT+PPL+YD V+RL  +FPEL   LNGG+ ++    + +        Y   + GVM+GRA Y  PW FR  D  +FG + +P L+RREI+   +D  ++   +     P  +    +C+ T  ++KPL  L SGA G + F+    RA+  Q ++  P  +I R+++E A+ ++  E+LD  V D
Sbjct:  139 DSYEELHHFITTVASAGVTHFIVHARKCLLNGLSTHENRTIPPLKYDWVYRLKEDFPELFFTLNGGVQSIQHAKELLDTT-----Y---IDGVMIGRAAYNTPWNFRDADRLIFGEASNPNLSRREIIADYLDYAEDMQTKWGVTEPITDVP--YCMPTSALMKPLLALFSGAAGGKAFK----RAISAQFAQRGPKPEI-RELIETALAVVPDEVLDLRVED 346          
BLAST of mRNA_H-paniculata_contig10774.489.1 vs. uniprot
Match: M4BKI6_HYAAE (Dus domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BKI6_HYAAE)

HSP 1 Score: 139 bits (351), Expect = 2.110e-33
Identity = 84/221 (38.01%), Postives = 124/221 (56.11%), Query Frame = 1
Query:    1 DRYEELTGFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGIDNLGSVNDHILGRGEWGGYGGGVAGVMVGRACYFDPWTFRHTDSAVFGSP-DPGLTRREIMEHCVDTFQEYMQEGQREGPERNRTRYHCLGTVLKPLGYLSSGARGSRKFRQELGRAVQVQ-SKIDPDADIFRDVVEAAMELMEPEILDEPVGD 657
            D YEEL  ++ +V  AGV H IVHARKC L GLST  NRT+PPLRY+VV++L  +FPEL   LNGG+ ++    + +            V GVM+GRA Y  PW FR  D  +F +  +P L+RREI+E  +   ++   +     P            +LKPL  L +G  G + F+    R++  Q ++  P A++ RD++E A++++  E+LD  V D
Sbjct:   44 DSYEELHHYIASVARAGVRHFIVHARKCFLKGLSTKDNRTIPPLRYEVVYQLKQDFPELLFTLNGGVQSIQHARELLDTT--------NVDGVMIGRAAYNTPWNFRDADRLIFSAERNPNLSRREIIERYLTYAEDLQSKWGSTKPLSESPYTMATSALLKPLLALFNGEIGGKAFK----RSISAQWARKGPRAEL-RDMIENAVKVLPDEVLDARVED 251          
BLAST of mRNA_H-paniculata_contig10774.489.1 vs. uniprot
Match: A0A0P1AFC1_PLAHL (Dus-domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AFC1_PLAHL)

HSP 1 Score: 142 bits (359), Expect = 2.260e-33
Identity = 84/220 (38.18%), Postives = 122/220 (55.45%), Query Frame = 1
Query:    1 DRYEELTGFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGIDNLGSVNDHILGRGEWGGYGGGVAGVMVGRACYFDPWTFRHTDSAVFGSP-DPGLTRREIMEHCVDTFQEYMQEGQREGPERNRTRYHCLGTVLKPLGYLSSGARGSRKFRQELGRAVQVQSKIDPDADIFRDVVEAAMELMEPEILDEPVGD 657
            D YEEL  +V  V +AGV H+IVHARKCLL GLS   NRTVPPLRYDVV+RL  +FPEL   LNGG+ ++    + +            V G+M+GRA Y  PW FR  D  +F +  +P L+RREI++  ++  +    +     P            ++KPL  L +G  G + F++E+  A   +    P+    R++VE A++++  E+LD  V D
Sbjct:  156 DSYEELHHYVTMVASAGVRHIIVHARKCLLKGLSPKENRTVPPLRYDVVYRLKQDFPELYFTLNGGVQSIQHARELLNST--------NVDGIMIGRAAYNSPWNFRDADRLIFNADRNPNLSRREIIQKYLEYAENLQDKWGSSKPLSELPYTMATSALMKPLLTLFNGEIGGKAFKREIS-AQWARKGQRPE---LREMVENALKVIPVEVLDARVED 363          
BLAST of mRNA_H-paniculata_contig10774.489.1 vs. uniprot
Match: A0A5D6XXI5_9STRA (Dus domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXI5_9STRA)

HSP 1 Score: 141 bits (356), Expect = 4.030e-33
Identity = 92/227 (40.53%), Postives = 126/227 (55.51%), Query Frame = 1
Query:    1 DRYEELTGFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGIDNLGSVNDHILGRGEWGGYGGGVAGVMVGRACYFDPWTFRHTDSAVFGSP-DPGLTRREIMEHCVDTFQEYMQEGQRE-------GPERNRTRYHCLGTVLKPLGYLSSGARGSRKFRQELGRAVQVQSKIDPDADIFRDVVEAAMELMEPEILDEPVGD 657
            D YEEL  F+  V + GV H IVHARKC+L GLS   NRTVPPL+Y+VV+RL  +FPEL   LNGG+ ++      +L           + GVM+GRA Y  PW FR  D  +FG   +P L+RREI    V  + EY +E Q         GP R   R     T++KPL  L +G  GS+ +++E+      +  I P+    R++VE A++L+  E+LD  V D
Sbjct:  155 DSYEELHEFISTVASCGVQHFIVHARKCILKGLSPHENRTVPPLKYNVVYRLKTDFPELRFTLNGGVASIQDAKQ-LLDETN-------IDGVMIGRAAYNTPWNFRDADRLIFGEERNPNLSRREI----VAKYLEYAEELQATWGSTVPIGPLRYTMR---TSTLIKPLLALFNGEYGSKAYKREITAQWGKKGPI-PE---LREIVEEAVKLIPDEVLDARVED 362          
BLAST of mRNA_H-paniculata_contig10774.489.1 vs. uniprot
Match: K3X2Z4_GLOUD (tRNA-dihydrouridine synthase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2Z4_GLOUD)

HSP 1 Score: 140 bits (352), Expect = 1.350e-32
Identity = 85/223 (38.12%), Postives = 125/223 (56.05%), Query Frame = 1
Query:    1 DRYEELTGFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGIDNLGSVNDHILGRGEWGGYGGGVAGVMVGRACYFDPWTFRHTDSAVFGSP-DPGLTRREIMEHCVDTFQEYMQEGQREGPERNRTRYHCLGTVLKPLGYLSSGARGSRKFRQELGRAVQVQSKIDPDADIFRDVVEAAMELMEPEILDEPVGDTPD 666
            D YEEL  FV  V ++GV H IVHARKC+L GLS   NRTVPPL+YD V+RL  +FP+L   LNGG+ ++    + +L           + GVM+GRA Y  PW FR  D  +FG+  +P L+RREI+E  +D   +   +     P           T++KPL  L +G  G + +++E+       S   P  ++ R+++E+AM+++  E+LD  V D  D
Sbjct:  154 DSYEELHHFVTTVASSGVKHFIVHARKCILKGLSPHENRTVPPLKYDFVYRLKADFPDLLFTLNGGVASIQHAKE-LLDETN-------IDGVMIGRAAYNTPWNFRDADRLIFGAERNPNLSRREIVEKYLDYADDLQAKWGSTVPLGKLNYTMRTSTLMKPLLTLFNGEYGGKAYKREITAR---WSHKGPRPEL-REMIESAMKVLPDEVLDARVEDELD 364          
BLAST of mRNA_H-paniculata_contig10774.489.1 vs. uniprot
Match: A0A2D4CBW8_PYTIN (tRNA-dihydrouridine synthase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBW8_PYTIN)

HSP 1 Score: 140 bits (352), Expect = 1.430e-32
Identity = 79/220 (35.91%), Postives = 121/220 (55.00%), Query Frame = 1
Query:    1 DRYEELTGFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGIDNLGSVNDHILGRGEWGGYGGGVAGVMVGRACYFDPWTFRHTDSAVFGSP-DPGLTRREIMEHCVDTFQEYMQEGQREGPERNRTRYHCLGTVLKPLGYLSSGARGSRKFRQELGRAVQVQSKIDPDADIFRDVVEAAMELMEPEILDEPVGD 657
            D YEEL  F+  V A+GV H +VHARKCLLNGLS   NRT+PPLRYD V+RL  +FP L   LNGG+ ++      +            + GVM+GRA Y+ PW FR  D  +FG   +P L+RREI+   +D  ++  ++     P      +     ++KPL  L +G  G + F++ +      +S   P+    R+++E A++++  ++LD  + D
Sbjct:  151 DSYEELHHFIDTVAASGVRHFVVHARKCLLNGLSPHENRTIPPLRYDWVYRLKDDFPHLRFTLNGGVQSIQHAKQLLDAT--------RLDGVMIGRAAYYTPWNFRDADRLLFGEARNPNLSRREIIAQYLDYAEDLQRKWGATEPISEIPYHMPTSALMKPLLGLFAGESGGKAFKRAIAARFADKSLPKPE---IRELIEEAIKVVPDDVLDLRIED 359          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10774.489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM35_ECTSI5.970e-12180.62tRNA-dihydrouridine synthase n=2 Tax=Ectocarpus Ta... [more]
G4ZWL3_PHYSP7.220e-3539.09Dus domain-containing protein n=25 Tax=Peronospora... [more]
H3GP67_PHYRM1.150e-3438.64Dus domain-containing protein n=1 Tax=Phytophthora... [more]
A0A484ECZ8_BRELC4.870e-3437.73Dus domain-containing protein n=1 Tax=Bremia lactu... [more]
A0A8K1CQW7_PYTOL9.130e-3440.81Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4BKI6_HYAAE2.110e-3338.01Dus domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A0P1AFC1_PLAHL2.260e-3338.18Dus-domain-containing protein n=1 Tax=Plasmopara h... [more]
A0A5D6XXI5_9STRA4.030e-3340.53Dus domain-containing protein n=1 Tax=Pythium bras... [more]
K3X2Z4_GLOUD1.350e-3238.12tRNA-dihydrouridine synthase n=1 Tax=Globisporangi... [more]
A0A2D4CBW8_PYTIN1.430e-3235.91tRNA-dihydrouridine synthase, putative n=1 Tax=Pyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10774contigH-paniculata_contig10774:231..4599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.0
Seed ortholog evalue2.7e-54
Seed eggNOG ortholog2880.D7FM35
KEGG koko:K05539,ko:K05542
Hectar predicted targeting categoryother localisation
EggNOG free text desc.tRNA dihydrouridine synthase activity
EggNOG OGsCOG0042@1,KOG2335@2759
Ec32 ortholog descriptiontRNA-dihydrouridine synthase
Ec32 orthologEc-01_010520.1
EC1.3.1.88
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons3
Model size2225
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10774.489.1prot_H-paniculata_contig10774.489.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10774 510..3064 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928780.5111961-UTR-H-paniculata_contig10774:230..5091622928780.5111961-UTR-H-paniculata_contig10774:230..509Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10774 231..509 +
1691480617.1867085-UTR-H-paniculata_contig10774:230..5091691480617.1867085-UTR-H-paniculata_contig10774:230..509Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10774 231..509 +
1622928780.5681887-UTR-H-paniculata_contig10774:3064..45991622928780.5681887-UTR-H-paniculata_contig10774:3064..4599Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10774 3065..4599 +
1691480617.2341647-UTR-H-paniculata_contig10774:3064..45991691480617.2341647-UTR-H-paniculata_contig10774:3064..4599Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10774 3065..4599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928780.522793-CDS-H-paniculata_contig10774:509..5881622928780.522793-CDS-H-paniculata_contig10774:509..588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10774 510..588 +
1691480617.1966565-CDS-H-paniculata_contig10774:509..5881691480617.1966565-CDS-H-paniculata_contig10774:509..588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10774 510..588 +
1622928780.5343792-CDS-H-paniculata_contig10774:1235..13901622928780.5343792-CDS-H-paniculata_contig10774:1235..1390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10774 1236..1390 +
1691480617.2078252-CDS-H-paniculata_contig10774:1235..13901691480617.2078252-CDS-H-paniculata_contig10774:1235..1390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10774 1236..1390 +
1622928780.5476117-CDS-H-paniculata_contig10774:2887..30641622928780.5476117-CDS-H-paniculata_contig10774:2887..3064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10774 2888..3064 +
1691480617.2244189-CDS-H-paniculata_contig10774:2887..30641691480617.2244189-CDS-H-paniculata_contig10774:2887..3064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10774 2888..3064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10774.489.1

>prot_H-paniculata_contig10774.489.1 ID=prot_H-paniculata_contig10774.489.1|Name=mRNA_H-paniculata_contig10774.489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MVGRACYFDPWTFRHTDSAVFGSPDPGLTRREIMEHCVDTFQEYMQEGQR
EGPERNRTRYHCLGTVLKPLGYLSSGARGSRKFRQELGRAVQVQSKIDPD
ADIFRDVVEAAMELMEPEILDEPVGDTPDAALGAVE*
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mRNA from alignment at H-paniculata_contig10774:231..4599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10774.489.1 ID=mRNA_H-paniculata_contig10774.489.1|Name=mRNA_H-paniculata_contig10774.489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4369bp|location=Sequence derived from alignment at H-paniculata_contig10774:231..4599+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGGTACGAGGAACTGACGGGCTTTGTGCGAGCTGTTAAGGCTGCTGG CGTCGACCACGTGATCGTGCACGCGAGGAAGTGCCTGCTCAACGGCTTGT CCACCTCGGCAAACCGCACGGTGCCACCGCTCCGATACGACGTCGTTCAC CGCCTCGCGCTCGAGTTTCCGGAGCTCGAAATCGTCTTGAACGGCGGGAT TGACAACTTGGGGTCCGTGAATGACCACATCTTGGGGCGGGGAGAGTGGG GGGGCTATGGCGGGGGCGTGGCCGGAGTTATGGTGGGTCGCGCGTGTTAT TTCGATCCGTGGACATTTCGACACACGGACAGCGCTGTCTTTGGCTCGCC CGATCCAGGTAAATACCGTAATACATTTTTTTATCCCAACGAGGTGTAAA CGTTGTTATTTCCAAATGCGATGGTATCGAGAACGGAGAACTTGCACGGT GGAAAAGAGCTCGTCAATTGAAAGATAGATCGCCTCAAGATTTTTTGACC GACACACACGCTTTTCGTTGTCAGTAGCTAGATAATGGCGTCTGAAAAGC GTTTGCTGACGCCCCGGTGCTGCAGCAAAGGGGGTGTTGCGGTGGATCAT GTTACATATTCACGGCTGACGAGATCGGAATTTGCGAATCACCCCAGCGA GTCTTTGTTTAGTAGTGTTTTGCCATGGTTTCAATTCCGCTTCGTTTGTG ACTCTCACCAAATATTTGTTTAACCCTTTTTTTGCTCGCCTCCTGTGTGT TCGTTTCGATTGTTTTTACGTATACATTTGTATATGTGCTTTATCTCGGG TTTGTTTTGCTTTCTTTTGTGGAGACATAGCGACGCACAATGATTTCTCG TTTCTATTCTTCAGTGTCGCTTTATATACCTGGGTGTGGGTCTGCGGAAC GTTCGTGTTTTTTTCCCCAAGAGCCCTTTCACCTACTGCTGATGATTTTT TTGCTCGGGAAGGGACATACATGTAACGGTCACGTTGTGTGTATCCATTG TGCAGGGTTGACCCGGCGTGAGATTATGGAGCATTGTGTTGACACGTTTC AAGAGTACATGCAGGAAGGACAGCGAGAGGGGCCTGAGCGCAACAGGACA CGATATCACTGCCTGGGGACAGTTTTGAAACCTCTCGGCTATCTCTCGTC CGGCGCAAGGGTAGGTCAATAAATGGAATTTCTCGCAGTTATTTGTGTCT TGTAATGGCCCGACGAATCGGCGTTTGAGCTTTGTCGCTTTAGACCGCAC AAGACGGTTTGTCGCGCGTACCTGTCGCCCATTTCTCCCCCTCCCGGAGG TTAGTTTTTGTGGTATTGTGGCGATCGCTCCAGTTGGGAACAAGCTCTGT GAATTCAGATCTGTTGCGTTGCCGAGGGTGCCTGGTAGGCCACGTCTTTG CCAAGCTTTTCTATGCTTTCGCGCTTGCAGGCATTATTTACATGGCAAAA TACTTAGCGAGTAGTTACTAGGACTTTGGCGGTTATTTTTTTTAGTTGCA GCTTTGGTAGCTGTAAATCTATAGCCCGCACATGAAGGCGGGAGCATCTG CAAGTTGCCCACCCCCCCGTTTTTTGCAAATACGGAGAAGGGTACAAAAA TTGTGGGAAAAGGCCGAAATAAACGGGAAGGCAAGAACACGTTAATCCCC ATTCGGCGTGCGACTTTTGTGTTTTAAAAAGCCCAAGTGTCACCTGCACG AATCAAATCATCTATTCATTTCGGTGAAGGTAGAGATACTGACGAGGTAA AACATTATTTTTTTTCCCGGGGGAACGAATCAACTTACGCTATTTTCCAG CATGTAACATCATATTGCACTGAAAAAACATACCCCAAATTCAGATCCCA GAGAATTCTCGAGGTGTAAGGCCCCTGAGGGTTAACGGTCGCGGAAGAGA GATACAGTTCATGCTTCAAGTGTTGGAATCATTGACAATGTGTGCGTGCG ATGGGCATGAAGGGAAGCGAGAACGTTTGAAATGAACACAAGGTGGCGCG CGGGCTGACATTGGGGCCGCGTAAAACGCTTCACATTGCGAGCGTTGAAT CAAAAGGTTGACCCATTTAGAGGCAGCAAAGATCCCAGTTGATGGACCCC GTTTTCATTTCATACTAACTCCACATGACTTTAACGCTGTCATGGATAAG GATGGTGCAGTGAGATGATCATCCATCCCGCCCACAACTCGAAGCATGCT TTGCGAAAGGGGCTGGTTACAGCATGCAGAGGATGTCGAGCCTAGGCTAA AGCCCACCGGCAACAGTAAAAAATTGTCTATGTACGCTGACAGCTGGTGG TGGAAACATGCATGAAATACATCTTCCAAACTTGACCGATTGATTCACTC CTGGCTGCTGCTATTTTTTTTCAGGCCCCACCCACAACTATTTAGCGCAT CGAATTTTCTCGTTGAATTTTCTTCTCGAGCAGCAGAAGTGTTTGCAGGA AAAAAAAGAAAAAAACTCAAGAAAATGTCACAGTAGTAGTAAGCGAACTA TATAGAGCTACACGGATCACCCTAATGCTTGGGGGTATCACACATGCGGC TGAAGAATATATTTACGGTCGAATGGCTTCCCCCCCCCCCCGTGTTTGTT GGCCTCCTTCAATTCGCTGGTGGCGTCTCTGACACCATTATCACTAAATT TGCGCAGGGTAGCAGGAAGTTCCGGCAGGAGCTCGGCCGCGCCGTTCAGG TGCAATCCAAGATAGATCCGGACGCAGATATTTTCCGAGATGTGGTGGAG GCCGCGATGGAGTTAATGGAGCCCGAGATACTCGACGAGCCCGTCGGAGA CACGCCTGATGCTGCCCTTGGAGCTGTGGAATGAAAAGAGCAACTCTTGA TGTTACTGCAGTTTATTATGGGGGAGAATGTGTGTGAACAAGAGGGAGGT GTTGGTATATTCTTGCAGCTGGCTTAGGGGCGATTTTTGTGTGAAACCGG AGAAAGTGGTCTTGTGTAGTTTTTTAGTTGGCTCAGCTGAACCGACTTTA TGTAAAAAAAGTGATACAGTCACAGAGCTCTTGGTGTAAGTGCGGATTTG CTTGAGGGTGGTGCTGTACGCAGTCTTTTCCCCGCTTTTCCTTTGCTTTG TGTGATAATTTTTATCTCAGGAGAGTATTTACTGTATGCTGTATGTAGCC GGGAGTGACTGTGGATTGCGTAGCCTCAGCGTGGCGTCTACTGTTTACTG GAGACACCCGAGATTGCAACAACCACATTACGCGGTAGCGTGCCTCCTTC GCTAGATGGAACTTTGCTTTATTGTTCCCTAGACACTGCTAGGCCATGCT GTGTCTCTACGCACCGAACGCAAGTGGTTTGTTTGTGCTTTTATGTTGTG TGCAAGCGACATATCGCGATTTCTGTGCGGAACCGGTCAACAGCACTGAT TGTCGTTACACAGATGAACGCGTTGGCAATGCGTTTTTTCTGTTGCTATC TGATCAACTACCGATGGTTTAGAGAAAACCAAACACATCGTCCCTTTTAG AAAACATAACACTTTTTGAAGGCAAGTTGATTGATTATAAAATTGATTAT ACCTTTGCCCTTTTTCTTTCTCGCTTTCGTACGTGAGAGTTTCTGAGTTT TGATCACATTTCTCGATTCAGTTCTCTCTCACGTAGTTTAGGCGCGTGCT CGCGTCTTTCCTGCAAATAAACGGCAAAAACGTTTGTACGCTACCACGCA ACACTGGTTGGTCTAACTATTGTACTCTCGCTGTTCTGACACGCCAGAAG GACTGAATCTCTATACTATTGCTCAAATGTGGAAAAAAATAGCGACGAAC GTTCCGGAGGAAAAATAAAACAAAGTGAAGATAATGACAACAAGGAAATG CCCTTACGTGTGAGTATCGCCGTGGAAAAATATGAGGTCAACGAGCATCG TCTCCTCCGCTGTCACTCGTTGAATGTGAAAAGCCTATTCCACACACTCT TGTACTACCGGTACATCGGGAAACGCAGATTTTTCTTTATGCCTGCAACC GCTGTTGCATGCAACTTGCAACTGGCAAAAAGTTGATGCCAAAACCGAGA ATAAAATATTGCAAAATAGTTCGCAGATATCAAAATAGCCAAAATGTCTC CTCCCCCTAATTTACTACAGTGGTACAAACGCAAGCGCTGGAACAATATG GAGCAACAACAAAGACTACAACAACAGCAACAAGGACGAAAAATCACGTT TCGTTTTTTGCCCGCTTCGCCTCCCCCTCCCCCTCCCCGACAATCGTCGC CGCAGCAGCAGCAGCACCGCCGCTAGGTGCCACCTTGGGTGTTGGTCTTC CCTTTCGCTTCACAACCATCACAGTCGCCCCCGCCCCCGCCCCCGCCGCC GCCGTCCCGGAAGCTGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig10774:231..4599+

>mRNA_H-paniculata_contig10774.489.1 ID=mRNA_H-paniculata_contig10774.489.1|Name=mRNA_H-paniculata_contig10774.489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig10774:231..4599+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGGTCGCGCGTGTTATTTCGATCCGTGGACATTTCGACACACGGA
CAGCGCTGTCTTTGGCTCGCCCGATCCAGATGGTGGGTCGCGCGTGTTAT
TTCGATCCGTGGACATTTCGACACACGGACAGCGCTGTCTTTGGCTCGCC
CGATCCAGGGTTGACCCGGCGTGAGATTATGGAGCATTGTGTTGACACGT
TTCAAGAGTACATGCAGGAAGGACAGCGAGAGGGGCCTGAGCGCAACAGG
ACACGATATCACTGCCTGGGGACAGTTTTGAAACCTCTCGGCTATCTCTC
GTCCGGCGCAAGGGGTTGACCCGGCGTGAGATTATGGAGCATTGTGTTGA
CACGTTTCAAGAGTACATGCAGGAAGGACAGCGAGAGGGGCCTGAGCGCA
ACAGGACACGATATCACTGCCTGGGGACAGTTTTGAAACCTCTCGGCTAT
CTCTCGTCCGGCGCAAGGGGTAGCAGGAAGTTCCGGCAGGAGCTCGGCCG
CGCCGTTCAGGTGCAATCCAAGATAGATCCGGACGCAGATATTTTCCGAG
ATGTGGTGGAGGCCGCGATGGAGTTAATGGAGCCCGAGATACTCGACGAG
CCCGTCGGAGACACGCCTGATGCTGCCCTTGGAGCTGTGGAATGAGGTAG
CAGGAAGTTCCGGCAGGAGCTCGGCCGCGCCGTTCAGGTGCAATCCAAGA
TAGATCCGGACGCAGATATTTTCCGAGATGTGGTGGAGGCCGCGATGGAG
TTAATGGAGCCCGAGATACTCGACGAGCCCGTCGGAGACACGCCTGATGC
TGCCCTTGGAGCTGTGGAATGA
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