mRNA_H-paniculata_contig10766.486.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10766.486.1
Unique NamemRNA_H-paniculata_contig10766.486.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10766.486.1 vs. uniprot
Match: D7FV36_ECTSI (Mediator of RNA polymerase II transcription subunit 21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV36_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 8.800e-51
Identity = 107/161 (66.46%), Postives = 120/161 (74.53%), Query Frame = 1 
Query:  163 EVQKADAVSVIQESVDQLALSMFDSLRLIPFVEEVKQAGGQRMPGAVSAQQRGAIAVAATDGAPPPTIKRAVATDAAWASRVQSLAESVLKQARELDGFIDTLPGAELREDQQMEELARLDAEGRRNRAKLAKTVERADELSNGVNDSLDKLAEHMLAAPR 645
            EV K DAVS +QESVDQLALSMFDSLRLIPF EEVK  GG R    +  QQ G       D AP   ++RAV T+AAWA  VQSLA+ VLKQAR LDG ID LPGAELREDQQMEE+ARLD EG+  R +LAK VE+A+ LS GVN SLD+LA+HML APR
Sbjct:   22 EVDK-DAVSAMQESVDQLALSMFDSLRLIPFSEEVK--GGARGVAPLQQQQPGQ-----PDAAP---LRRAVTTNAAWADTVQSLADGVLKQARALDGLIDVLPGAELREDQQMEEIARLDREGKLKRTELAKMVEKAEALSKGVNGSLDQLADHMLGAPR 171
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BLAST of mRNA_H-paniculata_contig10766.486.1 vs. uniprot
Match: A0A835Z332_9STRA (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z332_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 5.670e-8
Identity = 52/166 (31.33%), Postives = 76/166 (45.78%), Query Frame = 1 
Query:  169 QKADAVSVIQESVDQLALSMFDSLRLIP-------FVEEVKQAGGQRMPGAVSAQQRGAIAVAATDGAPPPTIKRAVATDAAWASRVQSLAESVLKQARELDGFIDTLPGAELREDQQMEELARLDAEGRRNRAKLAKTVERADELSNGVNDSLDKLAEHMLAAPR 645
            Q  D VSV+Q+ VDQLAL+MF+S+R +P       F  E   + GQ    + + QQ G                        W   V +L+  V+ +AR LD  I+TLPG +  E QQ++EL  L  E      +L      A   ++  +  LD L+  +L AP+
Sbjct:   20 QDQDQVSVMQDKVDQLALAMFESIRSLPDPAADPSFAPEFVVSAGQ----SDAQQQHGQQ----------------------WIDAVAALSARVVAEARALDNMIETLPGMDKTEAQQLQELKELGEESAALALQLRGRTAEAAAAADAADKVLDHLSSTLLVAPQ 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10766.486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV36_ECTSI8.800e-5166.46Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z332_9STRA5.670e-831.33Mediator of RNA polymerase II transcription subuni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10766contigH-paniculata_contig10766:5992..7590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue4.3e-08
Seed eggNOG ortholog4787.PITG_08084T0
KEGG koko:K15152
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Subunit 21 of Mediator complex
EggNOG OGs2CFQG@1,2S3J7@2759,3QIVP@4776
Ec32 ortholog descriptionMediator complex, subunit Med21
Ec32 orthologEc-12_005030.1
COG Functional cat.K
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons3
Model size729
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10766.486.1prot_H-paniculata_contig10766.486.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10766 6073..7548 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928780.057777-UTR-H-paniculata_contig10766:5991..60721622928780.057777-UTR-H-paniculata_contig10766:5991..6072Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10766 5992..6072 -
1691480616.9562588-UTR-H-paniculata_contig10766:5991..60721691480616.9562588-UTR-H-paniculata_contig10766:5991..6072Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10766 5992..6072 -
1622928780.1092577-UTR-H-paniculata_contig10766:7548..75901622928780.1092577-UTR-H-paniculata_contig10766:7548..7590Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10766 7549..7590 -
1691480616.992932-UTR-H-paniculata_contig10766:7548..75901691480616.992932-UTR-H-paniculata_contig10766:7548..7590Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10766 7549..7590 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928780.0741377-CDS-H-paniculata_contig10766:6072..62131622928780.0741377-CDS-H-paniculata_contig10766:6072..6213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10766 6073..6213 -
1691480616.9668052-CDS-H-paniculata_contig10766:6072..62131691480616.9668052-CDS-H-paniculata_contig10766:6072..6213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10766 6073..6213 -
1622928780.087376-CDS-H-paniculata_contig10766:6610..68401622928780.087376-CDS-H-paniculata_contig10766:6610..6840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10766 6611..6840 -
1691480616.9751463-CDS-H-paniculata_contig10766:6610..68401691480616.9751463-CDS-H-paniculata_contig10766:6610..6840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10766 6611..6840 -
1622928780.0980265-CDS-H-paniculata_contig10766:7313..75481622928780.0980265-CDS-H-paniculata_contig10766:7313..7548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10766 7314..7548 -
1691480616.9834983-CDS-H-paniculata_contig10766:7313..75481691480616.9834983-CDS-H-paniculata_contig10766:7313..7548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10766 7314..7548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10766.486.1

>prot_H-paniculata_contig10766.486.1 ID=prot_H-paniculata_contig10766.486.1|Name=mRNA_H-paniculata_contig10766.486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp
MLTGKVEIMTIDWSYIESKKNILTVPWIVTGAEGADMTMEEVQKADAVSV
IQESVDQLALSMFDSLRLIPFVEEVKQAGGQRMPGAVSAQQRGAIAVAAT
DGAPPPTIKRAVATDAAWASRVQSLAESVLKQARELDGFIDTLPGAELRE
DQQMEELARLDAEGRRNRAKLAKTVERADELSNGVNDSLDKLAEHMLAAP
R*
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mRNA from alignment at H-paniculata_contig10766:5992..7590-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10766.486.1 ID=mRNA_H-paniculata_contig10766.486.1|Name=mRNA_H-paniculata_contig10766.486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1599bp|location=Sequence derived from alignment at H-paniculata_contig10766:5992..7590- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTCAATGCAGCTTGCCTGCCAGACTGTTCCTTAGTTCGACATGTTAAC
AGGAAAGGTCGAGATTATGACAATAGATTGGTCGTACATCGAAAGTAAAA
AAAACATCCTCACTGTGCCTTGGATTGTAACAGGAGCGGAAGGGGCAGAT
ATGACCATGGAGGAAGTACAGAAGGCAGATGCGGTGTCTGTGATACAAGA
GTCGGTTGATCAACTGGCGTTAAGCATGTTCGATTCTCTGCGTCTCATAC
CGTTTGTGGAGGAAGTCAAGCAAGCAGGTGTGGGTTCGCTGGTCACGTGC
ATCTTGACTTGGCTTTTTATATCATGTGCACTTTACCTTGCTCTCGATCG
TAGATACTAACTGTACTGTCGTACTGTCTGTACAACACACCATGACCTAC
TGGACATTGGTCTCGTTGACAACTCATCATTATTTTCTTTTCCCGATCTT
GATGAACATATGCAGCACACCTGGGTGATCCTGGGATGTACATGTGTCGG
GAAGTGGTCCAATTTTATTTCCATTACAACAAGCCTCACCGAAAGTTTTG
CATTTTCATCAGAAAATGGTTGACCAGCTGCAGCATCTACCATCCTGGGG
ATGTCTCTAGTAAGTTGAGCTTTGGACCATCAGCATGTCATACCTTTTGA
ACAACACTCTTTAAGCACTAACTGAACACAACGCTATTTGTACGATCATT
GATGAGACAAGATCAAGAAGTAATTTTGGGCTTCCGATTGTCCCTCGCAG
GAGGGCAAAGAATGCCTGGTGCTGTCAGTGCTCAGCAGAGAGGTGCAATA
GCTGTCGCAGCAACTGATGGTGCCCCGCCACCCACCATCAAACGAGCCGT
CGCCACTGACGCTGCTTGGGCAAGTCGTGTCCAGTCGTTGGCAGAAAGTG
TGCTGAAACAAGCGAGAGAATTGGATGGGTTTATTGATACACTTCCTGGG
GCAGAACTGAGGGAGGACCAGCAGATGGAGGCAAGTGCAAGAACGACTGA
CGATGCAAGCTAGTTCTCCATTGTTATGCAACTCTGTCGATTTCTACCTG
TTCCACACAATCGCTACGCTCCTCGTGAATTCTAGCTACAGTATGCTGCA
TGACGTACTGTTGGCTGAGTAAGCCAGCTTAGCGATCCCCTGCCCCGTTC
CGCTTTAGAATGGAGTTTGGACGTGTCTGTGTTTGTCCCACGATACGATT
GCCTTCTGCGGGTTCAAATTGGTTGAGGCATGCGACATTACCATCATCAC
CGTATGCAGGGCCCTTCGTCAAGGAGAGAGGCCGTTACCATATCGAGTGC
AGGACCGGTACACCTCACATCTCACTCGTTGCTCTTGCCGTGTGTCTTGA
TATTTCGCCGGTACGTTCTTATTTCAGGAACTGGCCCGTCTTGACGCAGA
GGGAAGGCGAAACAGGGCAAAATTGGCCAAAACCGTAGAAAGGGCGGACG
AGCTTAGCAACGGCGTTAACGATAGTCTCGATAAGCTAGCGGAGCACATG
CTCGCGGCCCCCCGATAGCAGCGGCCGACCGCCGTAAAGGGTGCGGTCGC
AGTATGTCGTATGATCCTGCATGACATCCCCGTTTGCGTATATACATAC
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Coding sequence (CDS) from alignment at H-paniculata_contig10766:5992..7590-

>mRNA_H-paniculata_contig10766.486.1 ID=mRNA_H-paniculata_contig10766.486.1|Name=mRNA_H-paniculata_contig10766.486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at H-paniculata_contig10766:5992..7590- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAACAGGAAAGGTCGAGATTATGACAATAGATTGGTCGTACATCGA
AAGTAAAAAAAACATCCTCACTGTGCCTTGGATTGTAACAGGAGCGGAAG
GGGCAGATATGACCATGGAGGAAGTACAGAAGGCAGATGCGGTGTCTGTG
ATACAAGAGTCGGTTGATCAACTGGCGTTAAGCATGTTCGATTCTCTGCG
TCTCATACCGTTTGTGGAGGAAGTCAAGCAAGCAGATGTTAACAGGAAAG
GTCGAGATTATGACAATAGATTGGTCGTACATCGAAAGTAAAAAAAACAT
CCTCACTGTGCCTTGGATTGTAACAGGAGCGGAAGGGGCAGATATGACCA
TGGAGGAAGTACAGAAGGCAGATGCGGTGTCTGTGATACAAGAGTCGGTT
GATCAACTGGCGTTAAGCATGTTCGATTCTCTGCGTCTCATACCGTTTGT
GGAGGAAGTCAAGCAAGCAGGAGGGCAAAGAATGCCTGGTGCTGTCAGTG
CTCAGCAGAGAGGTGCAATAGCTGTCGCAGCAACTGATGGTGCCCCGCCA
CCCACCATCAAACGAGCCGTCGCCACTGACGCTGCTTGGGCAAGTCGTGT
CCAGTCGTTGGCAGAAAGTGTGCTGAAACAAGCGAGAGAATTGGATGGGT
TTATTGATACACTTCCTGGGGCAGAACTGAGGGAGGACCAGCAGATGGAG
GAGGGCAAAGAATGCCTGGTGCTGTCAGTGCTCAGCAGAGAGGTGCAATA
GCTGTCGCAGCAACTGATGGTGCCCCGCCACCCACCATCAAACGAGCCGT
CGCCACTGACGCTGCTTGGGCAAGTCGTGTCCAGTCGTTGGCAGAAAGTG
TGCTGAAACAAGCGAGAGAATTGGATGGGTTTATTGATACACTTCCTGGG
GCAGAACTGAGGGAGGACCAGCAGATGGAGGAACTGGCCCGTCTTGACGC
AGAGGGAAGGCGAAACAGGGCAAAATTGGCCAAAACCGTAGAAAGGGCGG
ACGAGCTTAGCAACGGCGTTAACGATAGTCTCGATAAGCTAGCGGAGCAC
ATGCTCGCGGCCCCCCGATAGGAACTGGCCCGTCTTGACGCAGAGGGAAG
GCGAAACAGGGCAAAATTGGCCAAAACCGTAGAAAGGGCGGACGAGCTTA
GCAACGGCGTTAACGATAGTCTCGATAAGCTAGCGGAGCACATGCTCGCG
GCCCCCCGATAG
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