mRNA_H-paniculata_contig10765.484.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10765.484.1
Unique NamemRNA_H-paniculata_contig10765.484.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10765.484.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 3.570e-52
Identity = 110/252 (43.65%), Postives = 149/252 (59.13%), Query Frame = 1
Query: 1168 GATRVQQWITFSLSFHHKKKCVDFILDHISRNRRTFTTGFTTIHIEEA*PYVLRGKEKVRMFPRE*NVGSIKVQHKSHIPKVMFICTVSRPDPEHDFDRKIGIWRVCTVREAQRT-------TARRARG----------------DMYEVDVTIDAEWYRELYVNDLLAEAK-KMWWLEGEELIAQQDGATPHTGKDSPQALNNAGMEAGLSVKLVTKPAQSPDLNMKDLGLFASLKSRGCGERYGKVDDLL 1851
            GA +    I  SLS   K+  +DFI D +      +      +H++E+  Y++R KEKVR+F  E   G  +V H+SH+PK+M I   +RPDP HDFD KIGIWR+C +  AQR+       TA   R                 + YE D TIDAEWY++ Y++ LL   K KM WL  + ++ QQDGA+PHTGK +P+ LN+AG+  G  V+LVT+PAQSPDLN+ DLG FASLK R  G     +D+L+
Sbjct:  113 GAAKKAGRIKPSLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_H-paniculata_contig10765.484.1 vs. uniprot
Match: A0A484KKG0_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KKG0_9ASTE)

HSP 1 Score: 104 bits (259), Expect = 5.900e-21
Identity = 73/223 (32.74%), Postives = 114/223 (51.12%), Query Frame = 1
Query: 1393 KSHIPKVMFICTVSRP--DPEHD--FDRKIGIWRVCTVREAQRTTARRARGDMYEVDVT-IDAEWYRELYVNDLLAEAK-KMWWLEGEELIAQQDGATPHTGKDSPQALNNAGMEAGLSVKLVTKPAQSPDLNMKDLGLFASLKSRGCGERYGKVDDLL*KEHVRRLRFRHV*ESYGHSMFKRYN-----------QVLRTMGGNDFEVEHIGTQERQREKGL 2010
            K+HIPK+M +C V RP   PE +  +D K+GIW +     AQR +  RA G +    +  I  E YR L +  +L   K K+     + +I QQD A PH   + P+ +  A  + G S++L  +P  SPDLN+ DLG FAS++S         VD+L+          +HV ++Y +   K+ N           ++++  GGN++++ HIG    +RE  L
Sbjct:   24 KAHIPKLMHLCAVGRPIFGPEGEVIWDGKVGIWPLTIQVPAQRRSKNRAAGTLETKPIPRITKEVYRTLMIQQVLPAIKEKVPEAITKHIIIQQDNAKPHIDVNDPEFVQVANAD-GYSIELTCQPPNSPDLNILDLGFFASIQSLQHQTSTRNVDELV----------QHVAQAYANLEAKKLNYVWISYQLAMTEIMKVQGGNNYKLAHIGKARLEREGAL 235          
BLAST of mRNA_H-paniculata_contig10765.484.1 vs. uniprot
Match: A0A5D6XR23_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR23_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.360e-20
Identity = 64/181 (35.36%), Postives = 96/181 (53.04%), Query Frame = 1
Query: 1285 FTTIHIEEA*PYVLRGKEKVRMFPRE*NVGSIKVQHKSHIPKVMFICTVSRP--DPEH--DFDRKIGIWRVCTVREAQRTTARRARGDMYEVDVTIDAEWYRELYVNDLLAEAKKMW--WLEGEELIAQQDGATPHTGKDSPQALNNAGMEAGLSVKLVTKPAQSPDLNMKDLGLFASLKS 1809
            F  +HI+E    V + K +V + P E N      QHKSH+PK+MF+C ++RP  DP     FDR IGIW       A R+++ R  G +    +  + E Y+ + + +++      W  W  G  ++ Q+D A PH    S   L    +  GLS+ +  +P QSPDLNM DLG F++L+S
Sbjct:   25 FDRVHIDEKWFVVNKTKRRVYLTPTEPNPQR-HAQHKSHLPKLMFLCAITRPRVDPATGASFDRGIGIWPFAEEIPAYRSSSNRQAGTLETKPLPANKETYKAMIMTEVVPAVVSKWPAW-GGRHIVLQRDNANPHRVVTSAD-LTATMVTTGLSIMVECQPPQSPDLNMLDLGFFSALQS 202          
BLAST of mRNA_H-paniculata_contig10765.484.1 vs. uniprot
Match: A0A6A4Z9D8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z9D8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.600e-20
Identity = 82/281 (29.18%), Postives = 139/281 (49.47%), Query Frame = 1
Query: 1204 LSFHHKKKCVDFILDHI---SRNRRTFTTGFTTIHIEEA*PYVLRGKEKVRMFPRE*NVGSIKVQHKSHIPKVMFICTVSRP--DPEHD--FDRKIGIWRVCTVREAQRTTARRARGDMYEVDVTIDAEWYRELYVNDLLAEAKKMWWLEGEELI-AQQDGATPHTGKDSPQALNNAGMEAGLSVKLVTKPAQSPDLNMKDLGLFASLKSRGCGERYGKVDDLL*K--EHVRRLRFRHV*ESYGHSMFKRYNQVLRTMGGNDFEVEHIGTQERQREKGLVK 2016
            L+  HK   + F+  H+   +  +R +     T+HI+E   YV +   +  ++  E  V + K + K HI KVMF+  V+RP  D  +   +D +IG+W     R A R++  R RGD      T+  + YR   ++ ++   +  W    +  I  QQD A PH   + P A+  AG + G ++ L ++PAQSPDLN+ DLG F +++S         +DDL+    +    L    + +++  ++ K    + +  G NDF++ H      Q++ GLVK
Sbjct:   12 LTDKHKSDRMAFVQRHLRTGASGKRYWHDMLDTVHIDEKWFYVTKQNRRYYLWSDE-AVPTRKCRSKKHITKVMFLTAVARPRYDARNKRMWDGRIGMWPFVKTRPALRSSKNRKRGDDVTEPFTVTRDVYRSFLIDKVIPAVRSKWPSSKKNQIWIQQDNAKPHVSVNDP-AVVAAGRQGGWTISLCSQPAQSPDLNVLDLGYFNAIQSLQHQMATYTLDDLVVAVVKSFEELECTVLDKTF-MTLQKVMECIFKMGGDNDFKLPH------QKKHGLVK 283          
BLAST of mRNA_H-paniculata_contig10765.484.1 vs. uniprot
Match: A0A6G0X8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8U9_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.470e-19
Identity = 76/261 (29.12%), Postives = 129/261 (49.43%), Query Frame = 1
Query: 1228 CVDFILDHISRNRRTFTTGFTT------IHIEEA*PYVLRGKEKVRMFPRE*NVGSIKVQHKSHIPKVMFICTVSRPDPEHD----FDRKIGIWRVCTVREAQRTTARRARGDMYEVDVTIDAEWYRELYVNDLLAEAKKMWWLEGEELIAQQDGATPHTGKDSPQALNNAGMEAGLSVKLVTKPAQSPDLNMKDLGLFASLKSRGCGERYGKVDDLL*KEHVRRLRFRH-V*ESYGHSMFKRYNQVLRTMGGNDFEVEHI 1977
            C+ F+   +S+  R+    F        IH++E   ++ + K    +   E  + S   +HKSHIPK+MF+  V RP  +H     FD K+GI+       A+R++  +A+G    +  T+  + Y +  VN +L      +    + L  QQDGA PH     P+ + +A    GL++KLVT+PA SPDLN+ DLG FA++++    +    +D+ L   H      +    +S   S+ +R   ++   G N  ++EH+
Sbjct:  127 CLSFL--RLSKTTRSCPAAFKFHAMLDWIHLDEKWFFLDKDKRTFYLVKGE-ELPSRTARHKSHIPKLMFLTAVGRPQYDHGTSQYFDGKLGIFPFVIHGTAKRSSRHQAKGAPVLIPQTVTRDIYVDALVNHVLPAILTKFPSRWKTLYIQQDGARPHCTDGCPELVASAA-SFGLNIKLVTQPANSPDLNILDLGFFAAIQTLQYRKCPKTIDEFLDAVHESFHELKSDCLDSVWLSLHRRMATIIDHYGDNTMKLEHM 383          
BLAST of mRNA_H-paniculata_contig10765.484.1 vs. uniprot
Match: A0A328DNN2_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta australis TaxID=267555 RepID=A0A328DNN2_9ASTE)

HSP 1 Score: 101 bits (252), Expect = 3.500e-19
Identity = 77/258 (29.84%), Postives = 130/258 (50.39%), Query Frame = 1
Query: 1291 TIHIEEA*PYVLRGKEKVRMFPRE*NVGSIKV-QHKSHIPKVMFICTVSRP--DPEHD--FDRKIGIWRVCTVREAQRTTARRARGDMY-EVDVTIDAEWYRELYVNDLLAEAK-KMWWLEGEELIAQQDGATPHTGKDSPQALNNAGMEAGLSVKLVTKPAQSPDLNMKDLGLFASLKSRGCGERYGKVDDLL*KEHVRRLRFRHV*ESYGHSMFKRYN-----------QVLRTMGGNDFEVEHIGTQERQREKGL 2010
            TIH++E   +    K+ +R++  E      +  + K+HIPK+M +C + RP   PE +  +D K+GIW +     AQR +  RA G +  ++   I  E YR L +  +L   K K+     + +I QQD A PH   + P+ +  A  + G S++L  +P  S DLN+ DLG FAS++S         V++L+          +HV ++Y +   K+ N           ++++  GGN++++ HIG    +RE  L
Sbjct:  106 TIHVDEK--WFEMSKQSLRVYKTEREREPHRTAKSKAHIPKLMHLCAIGRPIFGPEGEVIWDGKVGIWPLTIQVPAQRRSKNRAAGTLETKLIPRITKEVYRTLMIQQVLPTIKEKVPEAITKHIIIQQDNAKPHIDVNDPEFVQAANAD-GYSIELTCQPPNSLDLNILDLGFFASIQSLQHQTSTRNVNELV----------QHVAQAYANLEAKKLNYVWISYQLAMTEIMKVQGGNNYKLAHIGKARLEREGAL 350          
BLAST of mRNA_H-paniculata_contig10765.484.1 vs. uniprot
Match: A0A024TAS5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TAS5_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.000e-17
Identity = 50/146 (34.25%), Postives = 82/146 (56.16%), Query Frame = 1
Query: 1384 VQHKSHIPKVMFICTVSRPDPEHDFDRKIGIWRVCTVREAQRTTARRARGDMYEVDVTIDAEWYRELYVNDLLAEAKKMW-W---LEGEELIAQQDGATPHTGKDSPQALNNAGMEAGLSVKLVTKPAQSPDLNMKDLGLFASLKS 1809
            +Q KSHI KVMF+C V+RP   + +D ++G W +     A R++  R  G      V +  + YR + V+ ++   K  W W   ++G  ++ QQD A PH   D  + +  A  + G ++++  +PAQSPD+N+ DLG F S++S
Sbjct:   21 LQSKSHITKVMFLCAVARP--RNGWDGRLGCWEIVERAAAVRSSHNRPAGTEVVKSVVVTKDVYRRILVDKVVPAIKSKWKWPVGVDGGAIVLQQDNARPHIAPDDAEFVT-ASEDGGWTIRIENQPAQSPDMNVLDLGFFNSIQS 163          
BLAST of mRNA_H-paniculata_contig10765.484.1 vs. uniprot
Match: A0A6A4Z066_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z066_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.230e-17
Identity = 64/199 (32.16%), Postives = 96/199 (48.24%), Query Frame = 1
Query: 1393 KSHIPKVMFICTVSRPDPEHDFDRKIGIWRVCTVREAQRTTARRARGDMYEVDVTIDAEWYRELYVNDLLAEAKKMWWLEGEELIAQQDGATPHTGKDSPQALNNAGMEAGLSVKLVTKPAQSPDLNMKDLGLFASLKSRGCGERYGKVDDLL*KEHVRRLRFRHV*ESYGHSMFKRYNQVLRTM----GGNDFEVEHI 1977
            K  IPKVMF+C V RP     FD KIGIW   +   A R +  R  G M    V +D   YR+  +N ++   K+ +    + ++ Q D ATPH   D   AL     + G +  +  +P  SPDLN+ DLG FAS++S         VDD++       + F  + +    ++F     V+R +    GGN F++ H+
Sbjct:   37 KRFIPKVMFLCAVGRPRQADGFDGKIGIWPFVSKTPAVRNSRNRPAGTMVTTLVNVDGATYRDYVLNKVVPAIKEKFPSVSKRVVLQHDNATPHRSIDDA-ALAQVSTD-GWTFVVRRQPPNSPDLNVLDLGFFASIQSLQYKVVSRSVDDVIASTL---MAFDMLNDEKLANVFLTLQAVMRLVLEHRGGNHFKLPHL 230          
BLAST of mRNA_H-paniculata_contig10765.484.1 vs. uniprot
Match: A0A6A3KJZ0_9STRA (Uncharacterized protein n=4 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KJZ0_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.030e-16
Identity = 69/265 (26.04%), Postives = 125/265 (47.17%), Query Frame = 1
Query: 1237 FILDHISRNRRTFTTGFTTIHIEEA*PYVLRGKEKVRMFPRE*NVGSIK-VQHKSHIPKVMFICTVSRPD----PEHDFDRKIGIWRVCTVREAQRTTARRARGDMYEVDVTIDAEWYRELYVNDLLAEAKKMWWLEGEELIAQQDGATPHTGKDSPQALNNAGMEAGLSVKLVTKPAQSPDLNMKDLGLFASLKSRGCGERYGKVDDLL*K--EHVRRLRFRHV*ESYGHSMFKRYNQVLRTMGGNDFEVEHIGTQERQREKGL 2010
            F + HI R+   +     T+H++E   +V     +  + P E  V   + V+ + +I +VM +  V+RP      ++ FD K+G+W       A+R++ RR  G +   +V++    Y ++ ++ +L   +  W      ++ QQD A      D PQ    A    G  V+L  +PA SPDLN  DLGLF ++++R        +D+L+    E    L  R +  ++  S+    +Q ++  G N ++  H+   + +RE  L
Sbjct:   74 FCVSHIDRDTLLYADMLNTVHVDENIFHVTETTRRFLLLPGE--VAPTRCVKSRRYITRVMVLAAVARPRVDTVTQNYFDEKLGVWAFMEKAPAKRSSRRRPAGTLETKEVSVTKATYHDMLISRVLPSIEARWPNASGAVVIQQDNAPARIKPDDPQ-FTEAAACCGRHVELRFQPANSPDLNALDLGLFCAIQARQRKTIARTLDELIEAITESYWELPARTINAAF-ISLQDSMDQCIKQRGDNAYKPRHMKKAKLEREGRL 334          
BLAST of mRNA_H-paniculata_contig10765.484.1 vs. uniprot
Match: A0A1R3I5M9_9ROSI (Uncharacterized protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3I5M9_9ROSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.210e-16
Identity = 78/279 (27.96%), Postives = 131/279 (46.95%), Query Frame = 1
Query: 1201 SLSFHHKKKCVDFILDHISRNRRTFTTGFTTIHIEEA*PYVLRGKEKVRMFPRE*NVGSIKVQHKSHIPKVMFICTVSRP--DPEHD--FDRKIGIWRVCTVREAQRTTARRARGDMYEVDVT-IDAEWYRELYVNDLLAEAKKMWWLEG--EELIAQQDGATPHTGKDSPQALNNAGMEAGLSVKLVTKPAQSPDLNMKDLGLFASLKSRGCGERYGK-VDDLL*KEHVRRLRFRHV*-ESYGHSMFKRYNQVLRTMGGNDFEVEHIGTQERQREKGL 2010
            +L+F +K   + F L  +  N  TF   + TIHI+E   Y++R      + P E        + K+ IPKVMF+  V+RP  D   +  F  KIG++ + T   A+R++  R  G +    +T ++ +  +   +N ++   ++ W  +     +  QQD A PH   D       A  E G +V L  +PA SPDLN+ DLG F +++S        K +DDL+         F  V  + +  S+     ++++  G N +++ HI   +  RE  L
Sbjct:  142 NLTFENKIARLRFCLKMLESNDSTFKGMYDTIHIDEKWFYLIRKSVNYYLLPDE-EEPHRTCKSKNFIPKVMFLAAVARPRFDTAGNVLFSGKIGVFPLVTKEPAKRSSVNRHAGTLETKPITTVNKDVMKTFLINKVIPTIREKWPRDNMRSPIYIQQDNARPHVKFDDAD-FKKATKENGFNVILTNQPANSPDLNVLDLGFFCAIQSLQQQAAAPKTIDDLIMAVENSFEEFSPVDSDKFFLSLQTCMREIMKVKGCNKYKILHIKKDQLSREGRL 418          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10765.484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE3.570e-5243.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A484KKG0_9ASTE5.900e-2132.74Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A5D6XR23_9STRA1.360e-2035.36Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6A4Z9D8_9STRA3.600e-2029.18Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0X8U9_9STRA1.470e-1929.12Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A328DNN2_9ASTE3.500e-1929.84Uncharacterized protein n=1 Tax=Cuscuta australis ... [more]
A0A024TAS5_9STRA3.000e-1734.25Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6A4Z066_9STRA4.230e-1732.16Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A3KJZ0_9STRA2.030e-1626.04Uncharacterized protein n=4 Tax=Phytophthora rubi ... [more]
A0A1R3I5M9_9ROSI2.210e-1627.96Uncharacterized protein n=1 Tax=Corchorus olitoriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10765contigH-paniculata_contig10765:718..3708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog4792.ETI53387
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759,3QGXT@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size2991
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10765.484.1prot_H-paniculata_contig10765.484.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10765 2131..2571 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928779.8402154-UTR-H-paniculata_contig10765:717..21301622928779.8402154-UTR-H-paniculata_contig10765:717..2130Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10765 718..2130 +
1691480616.8674898-UTR-H-paniculata_contig10765:717..21301691480616.8674898-UTR-H-paniculata_contig10765:717..2130Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10765 718..2130 +
1622928779.8699484-UTR-H-paniculata_contig10765:2571..37081622928779.8699484-UTR-H-paniculata_contig10765:2571..3708Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10765 2572..3708 +
1691480616.8861814-UTR-H-paniculata_contig10765:2571..37081691480616.8861814-UTR-H-paniculata_contig10765:2571..3708Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10765 2572..3708 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928779.8577259-CDS-H-paniculata_contig10765:2130..25711622928779.8577259-CDS-H-paniculata_contig10765:2130..2571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10765 2131..2571 +
1691480616.8789935-CDS-H-paniculata_contig10765:2130..25711691480616.8789935-CDS-H-paniculata_contig10765:2130..2571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10765 2131..2571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10765.484.1

>prot_H-paniculata_contig10765.484.1 ID=prot_H-paniculata_contig10765.484.1|Name=mRNA_H-paniculata_contig10765.484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MFICTVSRPDPEHDFDRKIGIWRVCTVREAQRTTARRARGDMYEVDVTID
AEWYRELYVNDLLAEAKKMWWLEGEELIAQQDGATPHTGKDSPQALNNAG
MEAGLSVKLVTKPAQSPDLNMKDLGLFASLKSRGCGERYGKVDDLL*
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mRNA from alignment at H-paniculata_contig10765:718..3708+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10765.484.1 ID=mRNA_H-paniculata_contig10765.484.1|Name=mRNA_H-paniculata_contig10765.484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2991bp|location=Sequence derived from alignment at H-paniculata_contig10765:718..3708+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCACGTTCTGTAATTTTTTTGTTTTGGGCGTTTTGCACAAGGCACACAG AACACCTCGCTATGGAACTCCGTGGGGATACACGGTACTGTATAATGTTG TTCCTTGATGACCAAACGAAATAGCCCAGCAACAGTTTTACTCATGACGA GTTAGTCGACACAACAGCACGGACCGTTGCAGAACTTTGTTCTAGGTCGG TACACTGTCGCCGGTATATTTGATGTTATGTTCTGTGGAGCGTGTGGAAA GTCGACGGTTTGCTGTCGGTTTCCCACTGGCCTCTGAACACCTGCCTCTT ACCGTTGACGTGATACTGCTGCGCATCCCCACGGAACTCAAATGGGGTGA AAGTGCTGTTGTACTCATACTCCTTCTGTCCCGTAAGTTTGTTCCGTTAG CTATATACCGCATATCTCTTCAGGATGGTGTCCGATTTCAAAAAGGATTG TTGCGTTGGATTCTGTGCCATTTCTCCTGTCTTAAAAAGATTCTGTTCTG AATAAATGTTCCGAAAATTATCCCGAAAAAAAAATGTTCTTCTCGATATT TTTCGTCACTCGGGACTGGTTTTTCGGCTCGTTTGAAGTGGTTCAGTAGC ACGCTGTGGTCGCCCACTACTCTCTCAACCCCATTCCTTGGTCCCAGAAC CCCAGAAGCGCCACCACTCTTGACCACGAACCCTCGGACTGCCTACAATA GCCCGTCCAAGAGACTTGATGGCGAGCGCCCAGAGCCCGTCGACCGGGAT CGAATCTCCGTCAGCTGGTGGGAGCTCTTCATCTCGTCGCAGTGGCAACA ATTGCGAGCTGAGCGAGGAGCGCCGCAACGGGCTTGCTCTGCGATATGCG CTGGCTCTCTCTCCTGGCAAAGTGAGGCTCCCAGCCGGCGTCGGGCCGAA GTCGGCTGAAAAATTCGGGGTCACCGAGAGGTACCTGCGGTTGCTGTGGG TGCGGGGGAAAAAACAACTCGACGAAGGTAATGTGGTCTCTCTGAAAGCA CGGGGAAGACCTGGCCGGCCGTCGGACTTTACGCCACGGAAACAGGGCAA GATTCGAGAAATCAACGTCGCAAATCGCACGCCGATGCTGGACTAACGAT CCGCCAAGCTTGCCGAGGTCAGTCTTACCGTCGGCAGCAGCAAGCTTACT CGCTGGCTCAAACTCATGGGGCAACGAGGGTTCAGCAATGGATAACCTTC TCGCTTTCCTTTCATCACAAAAAAAAATGCGTGGACTTCATCCTCGACCA CATTTCCCGCAATCGCAGAACGTTCACGACAGGCTTCACCACAATCCACA TTGAGGAGGCGTGACCCTACGTCCTTCGCGGAAAGGAAAAGGTGCGAATG TTCCCCAGGGAATAAAATGTTGGCTCGATCAAGGTGCAGCATAAGAGTCA CATCCCCAAAGTGATGTTCATCTGCACCGTTTCGCGCCCCGATCCTGAAC ACGACTTCGACAGAAAGATCGGAATCTGGCGCGTTTGCACCGTGAGAGAG GCACAAAGGACTACCGCGCGGCGCGCTAGGGGCGACATGTACGAGGTCGA CGTCACCATCGATGCAGAATGGTACCGGGAGTTGTACGTCAATGACCTCT TGGCGGAGGCTAAGAAGATGTGGTGGCTCGAGGGGGAGGAGCTCATCGCG CAACAAGACGGCGCGACGCCCCACACGGGCAAAGATTCGCCACAGGCCTT GAACAACGCGGGGATGGAGGCGGGGTTGAGTGTGAAGCTCGTAACGAAGC CTGCGCAATCACCGGATCTCAACATGAAGGATTTGGGATTGTTTGCGTCT CTGAAGAGTAGGGGATGTGGAGAGCGTTACGGCAAGGTCGACGACCTTTT GTAGAAAGAGCACGTACGACGCCTACGATTTAGACACGTTTGAGAGAGTT ATGGGCACAGTATGTTCAAGAGGTACAACCAGGTTTTGCGAACCATGGGA GGGAATGATTTCGAGGTAGAGCACATAGGCACACAAGAAAGGCAGCGGGA AAAGGGGTTAGTAAAAGTCCAGGTGGACCAAGCCGCTGCAGCCGCGGCGG TGCTCAAATGGTGGCTTGATGGTGTTGACCAAGAATAATACGATGTTTTA TTAAGACGGAGGAAACGTCAAGGAATCCAACGCGACAATCTGTTTTGAAA TAGGACATCATCTTGAAAAGTTATGCGGTAAATAGCGGAACAAACTTGCG GGAGAGAAGGAGTATAACAGATCCCTCTTTTGGACCCGTTGTCGACATAG TGGTATCCGATAAATAATCGATATTGATGATCACTGGATTCCCCCTGTTG ACTGTTTGGCACAGGTCGGACGAGCACATGCTCGTCTCAACGAGCAAATC GTGGGGGTCATACGGAAAACCGACGAATAGACAGTATGTTGGGTTTCTCA AGGAGAGGAGAGGCGAGCACAGACTCAATAACGACGCCCTCGTGATTCCT GCTTAATTCCACCGGAATAGTTTCCGTGGAAAATGTATCGTCGAGCATGT TTTTTCCAGAAGACCCGACGAGTTGCTCGTTGAGACGAGCATGTGCTCGT CCGACGTGTGCTCTTTTGCTGCATGGGACTGAGCTGCTGCTGTCTCTCTT GTTTGCACACGGGTCCGTCACTACTTCTTTTTAGTCTGTCAAATAATGTA GTTCGCTGTGTTTTTCGTTTGTCGCCTCTTTTCTGTTGTAATCCATATTC GCCTTCCCAATGTGGTAAATGCTTCGCCTGAGGACCATTTATCCTTTTTT TCCCGGTTGTGAGCGGCCGGATTTTGGGGTATACTCTTTGCTCTATGGTT TGTGACACGGGCGGACAGACGGACGAGAAGAATTCGTCGGGGAGACGCAG TTGAAAACTAGGAACCACCGGATTCCGATTCATCCGATTGATTGAGGGTA GAGTCGGCCAGGCTCGCGTGGGTTACGCTGGGTAAAACCCTCATGCGCTG CGGGCAAAATTGGGCGCCAGGCTGGAGTTTCTCAAAACCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig10765:718..3708+

>mRNA_H-paniculata_contig10765.484.1 ID=mRNA_H-paniculata_contig10765.484.1|Name=mRNA_H-paniculata_contig10765.484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig10765:718..3708+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCATCTGCACCGTTTCGCGCCCCGATCCTGAACACGACTTCGACAG
AAAGATCGGAATCTGGCGCGTTTGCACCGTGAGAGAGGCACAAAGGACTA
CCGCGCGGCGCGCTAGGGGCGACATGTACGAGGTCGACGTCACCATCGAT
GCAGAATGGTACCGGGAGTTGTACGTCAATGACCTCTTGGCGGAGGCTAA
GAAGATGTGGTGGCTCGAGGGGGAGGAGCTCATCGCGCAACAAGACGGCG
CGACGCCCCACACGGGCAAAGATTCGCCACAGGCCTTGAACAACGCGGGG
ATGGAGGCGGGGTTGAGTGTGAAGCTCGTAACGAAGCCTGCGCAATCACC
GGATCTCAACATGAAGGATTTGGGATTGTTTGCGTCTCTGAAGAGTAGGG
GATGTGGAGAGCGTTACGGCAAGGTCGACGACCTTTTGTAGATGTTCATC
TGCACCGTTTCGCGCCCCGATCCTGAACACGACTTCGACAGAAAGATCGG
AATCTGGCGCGTTTGCACCGTGAGAGAGGCACAAAGGACTACCGCGCGGC
GCGCTAGGGGCGACATGTACGAGGTCGACGTCACCATCGATGCAGAATGG
TACCGGGAGTTGTACGTCAATGACCTCTTGGCGGAGGCTAAGAAGATGTG
GTGGCTCGAGGGGGAGGAGCTCATCGCGCAACAAGACGGCGCGACGCCCC
ACACGGGCAAAGATTCGCCACAGGCCTTGAACAACGCGGGGATGGAGGCG
GGGTTGAGTGTGAAGCTCGTAACGAAGCCTGCGCAATCACCGGATCTCAA
CATGAAGGATTTGGGATTGTTTGCGTCTCTGAAGAGTAGGGGATGTGGAG
AGCGTTACGGCAAGGTCGACGACCTTTTGTAG
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