mRNA_H-paniculata_contig10752.480.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10752.480.1
Unique NamemRNA_H-paniculata_contig10752.480.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig10752.480.1 vs. uniprot
Match: A0A6H5JLB7_9PHAE (KAP NTPase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB7_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 1.300e-70
Identity = 188/502 (37.45%), Postives = 262/502 (52.19%), Query Frame = 3 
Query:  312 LLLGMIKAKCTEQEKYVLVVSIDNLDRCPYRQIVKVLEAAHLLLEQEETNVVLLLALDPRVIIAAIEADMDNAMRQEVSGAEYLDKIIHWPFCIPFGTNNERLDLIGNWLETSWVGSQEGSTSQSTKDAGEFGGIRGGDSALAAISNGRSEPAGANPGRQTEFFARASANATHATDRALDSNFLGDEDV-DADPHNEQILTAASEGSRLQPDTRQGLDTIPDQVDDPLREEAIALAAEGGIAMGGGGGEPQERGYQQGSHHNISFPGAAAVATAQVR-----ESDDILPVPKMHTRGELEEFRVLVETVVTTPRKLKRVYNIYSIQRSLAIKIVRNFSQIDARKLLRWTFISEFWPFRASCLVGYIPIA--------GLPHETLANIYRENVAASIEQMIGKPTYNRLSAAGRGDHLNSQSEAKLPSGGQDVGSSSHAWTAARRHLSMDESDEGIIRFLESAPQLRVQDFLEKN--LGLLRLSFNLNPAMVASVSSWTRANW 1769
            +LL MI  + TE+ K+ LVVSIDNLDRCP+R IVKVLEA HLLLE+++TNVV++LALDPRVII+AIEAD+   +R+EVSG+EYLDKIIH PFC+PFGT  +RL LI +WL  +   ++       T + G+        S+L   S+G+    G    R              A++RA     +GD      DP    I   AS G         G  ++P++V      +  A      I       + +    +  +  + S   AA  +   +R     +  D       H  GE +EF +L + +VTTPRK+KR+ NIY IQR+LA +   +F    ARKLLRW  + EFWPFR +CLVG   +A        G     L  +Y E  +  ++ M+ +                 + + +  SGG        + +  RR L MDESD+  +R L++ P L V DF+E    LGLLR SFNLNPAMVA+V +W R+ +
Sbjct:  416 ILLDMITDRSTEKMKFALVVSIDNLDRCPHRNIVKVLEAVHLLLERDQTNVVVILALDPRVIISAIEADLGPEVRKEVSGSEYLDKIIHVPFCVPFGTQKQRLTLIDSWLGVTKGVTKSDENGSKTLEGGDG-------SSLCEPSSGKRPEIGTGDVRA-------------ASERAA---LMGDGSAAGGDPRGSAI--GASVG---------GTCSMPEEVGGRAAHQRSAEQ----IVNPNPRSDSKTPDLEDQTTLSRSSSTAATDSRNSLRNVAGDDQVDSTGSSPFHIPGETDEFHMLCKEIVTTPRKMKRILNIYGIQRALAKEQTSDFRSTSARKLLRWAALCEFWPFRTACLVGSAKLAIDTREEDLGDKSAPLQFVYMERTSKVMKTMLNETQ---------------KVDDEPRSGG-------FSRSEVRRLLGMDESDQAFLRVLQATPLLCVGDFMEGQDCLGLLRFSFNLNPAMVATVGAWVRSEF 857
[Close]
BLAST of mRNA_H-paniculata_contig10752.480.1 vs. uniprot
Match: A0A6H5K326_9PHAE (KAP NTPase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K326_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 5.880e-26
Identity = 65/104 (62.50%), Postives = 80/104 (76.92%), Query Frame = 3 
Query:  306 LPLLLGMIKAKCTEQEKYVLVVSIDNLDRCPYRQIVKVLEAAHLLLEQEETNVVLLLALDPRVIIAAIEADMDNAMRQEVSGAEYLDKIIHWPFCIPFGTNNER 617
            L LLL MIK   TE+EK+ LVVSIDNLDRCP+  IV+VL+A H LLE+   N +L+LALD RV+IAAI A MD+ +RQ VSG+EYL+KII+ PF IP GT  +R
Sbjct:  216 LQLLLDMIKDMGTEKEKFALVVSIDNLDRCPHDDIVQVLQAVHFLLEKPGANFILILALDSRVVIAAIGAGMDDLVRQRVSGSEYLEKIIYVPFFIPDGTMEDR 319
[Close]
BLAST of mRNA_H-paniculata_contig10752.480.1 vs. uniprot
Match: D7FSL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL5_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 4.110e-23
Identity = 72/177 (40.68%), Postives = 92/177 (51.98%), Query Frame = 3 
Query: 1260 YSIQRSLAIKIVRN-----FSQIDARKLLRWTFISEFWPFRASCLVGYIPIAGLPHET--LANIYRENVAASIEQMIGKPTYNRLSAAGRGDHLNSQSEAKLPSGGQDVGSSSHAWTAARRHLSMDESDEGIIRFLESAPQLRVQDFLEKNLGLLRLSFNLNPAMVASVSSWTRANW 1769
            YSIQR+LA +         F++  ARKLLRWT +SEFWPF  +CLV    +A    ET  LAN+Y    A  +  M+   T  R S   +    ++ +  +                 ARR +  +ESDE  +R L  AP L V+DF E  L LLR SFNLNPAMVA V +W RA W
Sbjct:    7 YSIQRALARRRADKNNGFKFTRDRARKLLRWTILSEFWPFHTACLVA---VAKKSKETGTLANLYETKGAKFLSDML---TDKRSSDGDQASMTDANTSFRAE---------------ARRLMGFEESDEAFVRVLGFAPDLLVEDFDEDKLMLLRHSFNLNPAMVARVVAWDRARW 162
[Close]
BLAST of mRNA_H-paniculata_contig10752.480.1 vs. uniprot
Match: D7FSL6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL6_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 9.190e-20
Identity = 53/79 (67.09%), Postives = 68/79 (86.08%), Query Frame = 3 
Query:  306 LPLLLGMIKAKCTEQEKYVLVVSIDNLDRCPYRQIVKVLEAAHLLLEQEETNVVLLLALDPRVIIAAIEADMDNAMRQE 542
            L +LLGM++ K T++++Y+LVVSIDNLDRCP+RQIVKVLEA HLLLE++  NV ++LALDPRVIIAAIE DM   +R+E
Sbjct:  554 LEVLLGMLEQKSTKEDRYMLVVSIDNLDRCPHRQIVKVLEAVHLLLEKDNVNVAVMLALDPRVIIAAIEQDMGEGIRKE 632
[Close]
BLAST of mRNA_H-paniculata_contig10752.480.1 vs. uniprot
Match: H2YLT8_CIOSA (KAP NTPase domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YLT8_CIOSA)

HSP 1 Score: 80.9 bits (198), Expect = 2.450e-13
Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = 3 
Query:  342 TEQEKYVLVVSIDNLDRCPYRQIVKVLEAAHLLLEQEETNVVLLLALDPRVIIAAIEADMDNAM-RQEVSGAEYLDKIIHWPFCIP-FGTNNERLDLIG 632
            T  + Y +++SID+LDRCP+ ++  VLEA ++LL    +  V L+ALD RV +  IE DM  A+ +  V+G EYL KII+ PFC+P  G  ++R    G
Sbjct:   64 THSKNYKIIISIDDLDRCPHEKVKSVLEAVNILLSDRSSPFVCLIALDSRVAVKCIEEDMGAALLKANVNGHEYLKKIINLPFCLPELGLRDKRRYFAG 162
[Close]
BLAST of mRNA_H-paniculata_contig10752.480.1 vs. uniprot
Match: F6UYN1_CIOIN (KAP NTPase domain-containing protein n=3 Tax=Ciona intestinalis TaxID=7719 RepID=F6UYN1_CIOIN)

HSP 1 Score: 82.0 bits (201), Expect = 2.470e-12
Identity = 42/99 (42.42%), Postives = 65/99 (65.66%), Query Frame = 3 
Query:  342 TEQEKYVLVVSIDNLDRCPYRQIVKVLEAAHLLLEQEETNVVLLLALDPRVIIAAIEADMDNAM-RQEVSGAEYLDKIIHWPFCIP-FGTNNERLDLIG 632
            T ++ Y +++SID+LDRCP+ ++  VLEA  +LL    +  + L+ALD RV +  IE DM +A+ +  V+G EYL KII+ PFC+P  G+ ++R    G
Sbjct:  170 THKKNYKIIISIDDLDRCPHEKVKSVLEAVSILLSDRSSPFICLIALDSRVAVKCIEEDMGSALLKANVNGHEYLKKIINLPFCLPELGSRDKRRYFAG 268
[Close]
BLAST of mRNA_H-paniculata_contig10752.480.1 vs. uniprot
Match: A0A6F9DG35_9ASCI (Uncharacterized protein LOC100178218 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DG35_9ASCI)

HSP 1 Score: 80.5 bits (197), Expect = 1.130e-11
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 3 
Query:  342 TEQEKYVLVVSIDNLDRCPYRQIVKVLEAAHLLLEQEETNVVLLLALDPRVIIAAIEADMDNAM-RQEVSGAEYLDKIIHWPFCIP 596
            T Q+ Y +++SID+LDRCP+ ++  VLEA  +LL    +  V L+ALD RV +  IE  M NA+ +  V+G EYL KII+ PFC+P
Sbjct:  572 THQQNYKIIISIDDLDRCPHEKVKSVLEAVSILLSDRCSPFVCLIALDSRVAVKCIEEGMGNALLKANVNGHEYLKKIINLPFCLP 657
[Close]
BLAST of mRNA_H-paniculata_contig10752.480.1 vs. uniprot
Match: A0A6P4XWQ6_BRABE (LOW QUALITY PROTEIN: uncharacterized protein LOC109467503 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4XWQ6_BRABE)

HSP 1 Score: 77.4 bits (189), Expect = 1.070e-10
Identity = 33/97 (34.02%), Postives = 64/97 (65.98%), Query Frame = 3 
Query:  354 KYVLVVSIDNLDRCPYRQIVKVLEAAHLLLEQEETNVVLLLALDPRVIIAAIEADMDNAMRQEVSGAEYLDKIIHWPFCIPFGTNNERLDLIGNWLE 644
            +Y +++ +D+LD CP  +++ VLE+  +LL  EETN++ ++A+DP++++  +E+ + + +    SG EYL +I+H+P C+P  +  ER  L    +E
Sbjct:  739 QYRVIIVVDDLDCCPGDRVIGVLESMSILLSDEETNIISIVAMDPKIVVNCLESRLTDTITNNSSGYEYLRRIVHFPVCLPEPSVEERRKLFYKIVE 835
[Close]
BLAST of mRNA_H-paniculata_contig10752.480.1 vs. uniprot
Match: A0A7S2Q1Q4_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2Q1Q4_9DINO)

HSP 1 Score: 73.6 bits (179), Expect = 2.300e-10
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 3 
Query:  363 LVVSIDNLDRCPYRQIVKVLEAAHLLLEQEETNVVLLLALDPRVIIAAIEADMDNAMRQ-EVSGAEYLDKIIHWPFCIPFGTNNERLDLIGNWL 641
            +V+ +D+LDRC   ++V+VL+A  LL   E +  +L LA+DPRVI++AIE D  N  R+  ++G EYLDKII  PF  P  T++E+  L   +L
Sbjct:  110 IVIFVDDLDRCAPSKVVEVLQAMVLL--SENSPFILFLAVDPRVIVSAIECDNKNFYREANITGCEYLDKIIQVPFAFPELTDDEKGKLFRGFL 201
[Close]
BLAST of mRNA_H-paniculata_contig10752.480.1 vs. uniprot
Match: C3Z0R3_BRAFL (KAP NTPase domain-containing protein n=3 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z0R3_BRAFL)

HSP 1 Score: 74.7 bits (182), Expect = 7.330e-10
Identity = 33/97 (34.02%), Postives = 65/97 (67.01%), Query Frame = 3 
Query:  354 KYVLVVSIDNLDRCPYRQIVKVLEAAHLLLEQEETNVVLLLALDPRVIIAAIEADMDNAMRQEVSGAEYLDKIIHWPFCIPFGTNNERLDLIGNWLE 644
            +Y +++ +D+LD CP  ++V VLEA ++LL  EE+N++ ++A+DP++I+  +E+ + + +    SG EYL +I+ +P C+P  +  +R  L+   +E
Sbjct:  759 QYRVIIVVDDLDCCPGDRVVGVLEAMNILLSDEESNIISIVAMDPKIIVNCLESRLTDTITNNSSGYEYLKRIVQFPVCLPEPSVADRRKLLYTVVE 855
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10752.480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLB7_9PHAE1.300e-7037.45KAP NTPase domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5K326_9PHAE5.880e-2662.50KAP NTPase domain-containing protein n=1 Tax=Ectoc... [more]
D7FSL5_ECTSI4.110e-2340.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSL6_ECTSI9.190e-2067.09Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
H2YLT8_CIOSA2.450e-1343.43KAP NTPase domain-containing protein n=1 Tax=Ciona... [more]
F6UYN1_CIOIN2.470e-1242.42KAP NTPase domain-containing protein n=3 Tax=Ciona... [more]
A0A6F9DG35_9ASCI1.130e-1147.67Uncharacterized protein LOC100178218 n=1 Tax=Phall... [more]
A0A6P4XWQ6_BRABE1.070e-1034.02LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]
A0A7S2Q1Q4_9DINO2.300e-1044.68Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
C3Z0R3_BRAFL7.330e-1034.02KAP NTPase domain-containing protein n=3 Tax=Branc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10752contigH-paniculata_contig10752:31..5963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog2880.D7FSL6
Hectar predicted targeting categoryother localisation
EggNOG OGs2E19U@1,2S8MQ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size2753
Cds size1452
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10752.480.1prot_H-paniculata_contig10752.480.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10752 366..4985 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928779.1899164-UTR-H-paniculata_contig10752:30..3411622928779.1899164-UTR-H-paniculata_contig10752:30..341Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10752 31..341 +
1691480616.5601692-UTR-H-paniculata_contig10752:30..3411691480616.5601692-UTR-H-paniculata_contig10752:30..341Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10752 31..341 +
1622928779.2057774-UTR-H-paniculata_contig10752:353..3651622928779.2057774-UTR-H-paniculata_contig10752:353..365Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10752 354..365 +
1691480616.5714424-UTR-H-paniculata_contig10752:353..3651691480616.5714424-UTR-H-paniculata_contig10752:353..365Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10752 354..365 +
1622928779.331756-UTR-H-paniculata_contig10752:4985..59631622928779.331756-UTR-H-paniculata_contig10752:4985..5963Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10752 4986..5963 +
1691480616.6585636-UTR-H-paniculata_contig10752:4985..59631691480616.6585636-UTR-H-paniculata_contig10752:4985..5963Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10752 4986..5963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928779.2267601-CDS-H-paniculata_contig10752:365..4971622928779.2267601-CDS-H-paniculata_contig10752:365..497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10752 366..497 +
1691480616.5809186-CDS-H-paniculata_contig10752:365..4971691480616.5809186-CDS-H-paniculata_contig10752:365..497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10752 366..497 +
1622928779.2419724-CDS-H-paniculata_contig10752:833..9201622928779.2419724-CDS-H-paniculata_contig10752:833..920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10752 834..920 +
1691480616.5885804-CDS-H-paniculata_contig10752:833..9201691480616.5885804-CDS-H-paniculata_contig10752:833..920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10752 834..920 +
1622928779.2551777-CDS-H-paniculata_contig10752:1807..19581622928779.2551777-CDS-H-paniculata_contig10752:1807..1958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10752 1808..1958 +
1691480616.5982604-CDS-H-paniculata_contig10752:1807..19581691480616.5982604-CDS-H-paniculata_contig10752:1807..1958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10752 1808..1958 +
1622928779.2697105-CDS-H-paniculata_contig10752:2242..28071622928779.2697105-CDS-H-paniculata_contig10752:2242..2807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10752 2243..2807 +
1691480616.6056592-CDS-H-paniculata_contig10752:2242..28071691480616.6056592-CDS-H-paniculata_contig10752:2242..2807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10752 2243..2807 +
1622928779.2826488-CDS-H-paniculata_contig10752:3933..40321622928779.2826488-CDS-H-paniculata_contig10752:3933..4032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10752 3934..4032 +
1691480616.612862-CDS-H-paniculata_contig10752:3933..40321691480616.612862-CDS-H-paniculata_contig10752:3933..4032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10752 3934..4032 +
1622928779.2975261-CDS-H-paniculata_contig10752:4244..43671622928779.2975261-CDS-H-paniculata_contig10752:4244..4367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10752 4245..4367 +
1691480616.629689-CDS-H-paniculata_contig10752:4244..43671691480616.629689-CDS-H-paniculata_contig10752:4244..4367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10752 4245..4367 +
1622928779.3170474-CDS-H-paniculata_contig10752:4690..49851622928779.3170474-CDS-H-paniculata_contig10752:4690..4985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10752 4691..4985 +
1691480616.6410751-CDS-H-paniculata_contig10752:4690..49851691480616.6410751-CDS-H-paniculata_contig10752:4690..4985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10752 4691..4985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10752.480.1

>prot_H-paniculata_contig10752.480.1 ID=prot_H-paniculata_contig10752.480.1|Name=mRNA_H-paniculata_contig10752.480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=484bp
MIKAKCTEQEKYVLVVSIDNLDRCPYRQIVKVLEAAHLLLEQEETNVVLL
LALDPRVIIAAIEADMDNAMRQEVSGAEYLDKIIHWPFCIPFGTNNERLD
LIGNWLETSWVGSQEGSTSQSTKDAGEFGGIRGGDSALAAISNGRSEPAG
ANPGRQTEFFARASANATHATDRALDSNFLGDEDVDADPHNEQILTAASE
GSRLQPDTRQGLDTIPDQVDDPLREEAIALAAEGGIAMGGGGGEPQERGY
QQGSHHNISFPGAAAVATAQVRESDDILPVPKMHTRGELEEFRVLVETVV
TTPRKLKRVYNIYSIQRSLAIKIVRNFSQIDARKLLRWTFISEFWPFRAS
CLVGYIPIAGLPHETLANIYRENVAASIEQMIGKPTYNRLSAAGRGDHLN
SQSEAKLPSGGQDVGSSSHAWTAARRHLSMDESDEGIIRFLESAPQLRVQ
DFLEKNLGLLRLSFNLNPAMVASVSSWTRANWY*
back to top

mRNA from alignment at H-paniculata_contig10752:31..5963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10752.480.1 ID=mRNA_H-paniculata_contig10752.480.1|Name=mRNA_H-paniculata_contig10752.480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5933bp|location=Sequence derived from alignment at H-paniculata_contig10752:31..5963+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAACGTAGACATGTTTGGGCGAATGTCTGAATGTGGAAGCAGCGGAAAA
GGTTTTTGCCTCAGTCTTCTGGGGGTTAAAAAAAAAGAAAAAGATCCGAA
TGAGAATGACGCGTCGACTCTATTTGTTCTATGTGGGCCCGGCTTATGGA
GCCCTACGGTGCATGTAATATACTGCTACCTCTGCATGGTGTTTTGAGGG
CATGTTGGCGGCGGTAACGCATTCACGTTATGCTCACATTAAATATGTAT
TCAGATTTAGTTGCATTCCTTGCTGCAGAGTAATGCACAAAAAATATACC
GTTGGTTGCCCGTGTCCTGTAAGCTTTTGCTCGGTATGATCAAGGCCAAG
TGCACCGAGCAGGAGAAGTACGTTCTGGTCGTGAGCATCGATAACCTCGA
CCGATGCCCGTATCGCCAGATAGTCAAGGTGCTTGAGGCGGCGCACCTTC
TACTCGAGCAGGAAGAGGTAAGGCCCTACTATATGGCATGAGCTACCCTT
GAAGTGTCTTCCACCTGTTTCGCAGCCTTCAGACCTTGCACACTAAATCC
TAATCTCATCCCCGGCCCTGCCTAGGATCGGTCCACACGTTTCCGCTTTT
CAATTCCCATCTACTGACTCCTTATCGTTTGTAACGACTCATGTCGCGGT
GCATATTTGCGGACGATGTGATTAACAAACGTTTTTCCTCATGGAAGAAA
AATTGCTGCTCGGTGAGATTTCTTTCCGTGACAAAGGTATATATTAAATC
GACACTCGTTCGCCTTCGCTCTTTGGTACCCTGCCTGTTTCTCGTTCGCT
CAGACCAATGTCGTACTTCTCTTGGCTTTGGACCCCAGGGTGATCATCGC
TGCTATTGAGGCCGACATGGATAATGCCATGAGGCAGGAGGTAACTGACA
TGAAGTAATATTTTGTATCTTTAGTACCGTCTATACCCGATGCGAGATAG
AGGTTGAGGGTAACTGTCACGGACGTTGTAGGTGAACATCGATGGAATAG
TTGAGTCGTCCCACCAGGCAGACCCTTCGCTTTGGAGTGAAAATGACTCC
CTCACTGACAATACTTACGCTGAGTATCTACCGCACTGCCGGCGAACTGT
CGTGCATCTGGGTCAGACGGGCTGTACTCACACGTAGTGCGTTCGCGTCG
TGAAGCGAGCTACTGCAGGTCTATTCCACACGTAATTTCACCAATTACGT
ACGGTGTGTGGAGTGCCGAGCAATTTGCCTCCAACATGTGTACACCAACG
ATAGCGCCATGGCTACACCTGTGGAGTTAATGTGTCATCCTATCCACTTG
TTCACCACTCCTGACCGCTATCTTTCGTTGTTAAAGATTCCAACCATTAT
ATTCATGTGCACATGACGTACTTCGAAGGGTTCTGGGGTGGTGAACTCTA
CATTGTGGTGTATTTCTAACCTTGCGCGTACATGCAGAGCAGTAACACCA
ATATTTCATTTTCCTCTTTTTTTTCAGGGATTCCACCTCCGTGCATGCCC
TCCCGCAGAAACTCTCCCGACTGTACGTTGACATCGGGATGAAGGGGAAG
TTTCCTAACGCAACGTTGCTGTTTTCACTTTCACACAAAGTTTGGAAAAG
CTGATGCAATCGTATTTGCGCATTTGTCAAAGAGGAAACGAAACATGAAC
TCTGACATAATCCTGTTCGCCCTGAAACCCTGGCAGTAAGACGACTGAAG
TCTGAGACTGCCGTACGTGCTTTCGTGCTCCGACACGATGTACTAATCAT
TTCTGCGCCTGGTGTGGTTGTTCAAAGGTGTCTGGTGCTGAGTACCTGGA
CAAGATCATCCACTGGCCATTTTGTATCCCGTTTGGAACGAACAATGAAC
GACTGGACCTTATAGGAAACTGGCTGGAAACCTCGTGGGTCGGTTCTCAA
GAGGGGAGCACCTCACAGAGCACTAAAGGTACTTTTCTTTTATCGAATCG
TGAGATATGAGAAAGCGGGTGCATGAGATTCTTCCGATATTTGTCGCGCA
ATTTGCAGCCTAGGGGACATAGCAGGAGGAGGCTCTTTACAAATGCCTCA
GGTCGATTATGCGTACACCATTATTACTTTACTTGAAACAAACAGGGAGT
CGCAGTTTCGGCGCTTGATTTCATTTATCTTCGGACTTCATCAAGGTTTG
TTTTTATTGATCGATGTCTCACACGCCGATTACTACCCCCGCCTTGTTAC
CGCTGCATACAGATGCTGGGGAGTTTGGTGGTATAAGGGGAGGAGATTCA
GCGCTCGCGGCGATCAGCAACGGCCGTTCGGAGCCCGCAGGCGCCAATCC
CGGCCGGCAAACTGAATTTTTTGCACGCGCCAGCGCTAATGCAACCCACG
CAACAGACCGTGCGCTAGATTCAAATTTCCTTGGCGACGAAGACGTGGAC
GCAGATCCTCATAACGAACAGATCCTGACCGCCGCCTCCGAGGGCAGTAG
ACTGCAACCCGATACACGACAAGGTCTTGACACTATACCCGATCAAGTAG
ATGACCCCTTGCGGGAAGAAGCCATTGCTCTGGCGGCAGAAGGTGGAATT
GCAATGGGAGGGGGTGGTGGTGAACCGCAAGAACGTGGTTACCAGCAAGG
CTCGCATCACAACATTTCCTTCCCGGGGGCGGCAGCGGTAGCGACGGCGC
AAGTTCGTGAATCCGACGATATTCTGCCGGTACCTAAAATGCACACACGG
GGCGAGCTGGAGGAGTTCCGAGTTCTTGTAGAAACAGTGGTCACCACCCC
TCGGAAGCTCAAGCGCGTCTATAATATGTAGGTTCACATCTGAAGCGGTG
GGATGTGTGGGGAGGAAGGGATATGGATGAGTTGTTGGACGAGAAGCTAC
TCGAATTTGTTGTCTTTTGCTGACAACTCATACTTAGCGCTCGTTTCATG
TTTCCTTGAAGTATTTTGGCCTCGTAAGTAGTATACGGGCTACTCCATCA
CCTGGAGACCAATACTAACAATATGCTGATTTGTTTTCAATGGTCAGACA
TCGATGGCATGGATATGGTTGGCTTTGGTTCAACGCGATGTTTGCCTTGC
AGTGCGCGATCCCTTGTCGGGTGTTTTCTATAGTAGTATGCTGGTGAGAT
CTAATGAGTACCCATTGTGCTGTGGTGCCCGTTCCTGCTTCCGCGTAATA
AAAATATGCTTTTGGCATGTGTGGTGGAGACGGTCTTAAGAGCGACCTTA
CGGGATAGATATTGGGTTAACCTATACCTTTAGCCTAAGGGATCAGTATG
GCACTTGATGTCGCCTGGGACTAGAGTTGGATTCATCCTAATCGTTCTTC
TTTTTTAGAAGCTCTTCCACTCTCGTCTCTCTTCTTCACACTACTACCCA
TTTCCCAAAATACTCAACATGTCCGAATATCACGTTTGAGGCATAAAGGG
GGCCGTTAGGACCTTGCGGGGGTCAAGAGGGCGCGTGTGTGGTGGGGACG
GTCTTAAGAGCACCCTCAAGCGAAATGTTTTGGGCTAATCTACACCTTTA
GCCTAAGGGATCAGTACGACACTTGAAGTCACCTTGGACTAGAGTTCGAT
TTTTCATAATCGTTCTTCTTTTTTCAGAACCTATTTCCCTTTTATCTCTC
CTCTTCACATTAGTAGCCGTTCCCATAAATACCCCAAATTCCCGCAGAGA
ACACCGACGGGGGGCGTAAAGGGGGGCATTAGGGCCCTGCGGGCGTTAAC
GGGGGGGGAAGTGTGGTGGTGACGGTCTTAAAAACACCGTAAAGCAATAG
ATATGGGGTAATCCTATACCTTCAGCTTAAGGAATCATTATGGCACACGT
ATGTCCGCGCCGGTCTCGGCGTCGTCGTATCCACTTTTTGAGACACTCGA
TTCCTGCGTGCACATGTACTTCCCCTCCGTACTGTCTTTACCGATCGCCT
CAGATACAGCATCCAACGCTCTCTGGCCATCAAAATAGTCCGAAACTTCA
GTCAAATTGACGCGCGGAAGCTCCTTAGGTGGACCTTCATTTCGGAGTTC
TGGTACGTGGGGCGTTGAATTACTTCTGCCTGGTTCTAACTCGCCCTGAA
TCCCAACATGCGACCGAGGTAGGAATCGGGCTCGTGATCAGGAACGACGA
GGGAACATCGTACTCAGCATAGCGTTGTACATGCAGTAGACGTTTCCTCC
CCATTCCATACCATATTTACTTTCCTTGCGTCCGTTAACCCCCACTGCGG
TTGTTCTGTCGCAGGCCGTTTCGGGCGTCTTGCCTCGTTGGATACATTCC
TATTGCTGGGCTTCCGCACGAAACGCTCGCTAACATCTACAGAGAGAACG
TGGCCGCAAGCATTGAGCAGATGATCGGCAAGCCCACGTGAGACATCACT
TATTCCTGGAATGGTGGCCCTTCGTAACAGCTGATGCATTTTCTTCAACG
GATAATCTACACATGATACTCACCGCCCGTGCAGGGAGGAAGTATGCTGC
ATCAAATCGGGGGTGTTGTTTTGAATCCACGAGAATAATATAGAATGATT
GTACCAGAATTTACGCCAGACGAAAAACTTGCCCATCGAAACCTAACGCA
GTGGCCCTTTTGCAGGTTTCACATCCCTATAAGGAATATATCCAGGAGGT
ACGAATGCTAAATGTGTACACGTACGATGCTTATCTTATCGCTTGGAACG
CCATTTTCAGATACAATAGGCTGTCCGCTGCTGGCCGGGGAGACCACTTG
AACAGCCAAAGTGAGGCAAAATTGCCGTCAGGTGGGCAAGACGTAGGTAG
CTCCAGCCACGCGTGGACCGCGGCGCGGAGGCATCTAAGCATGGACGAGT
CTGACGAGGGGATCATTAGGTTTCTGGAATCAGCACCTCAGCTGCGGGTA
CAAGACTTTCTCGAGAAAAACCTCGGGCTGTTGCGCCTCTCGTTCAATCT
GAATCCGGCGATGGTGGCAAGCGTCAGCTCGTGGACCCGCGCGAACTGGT
ATTGAAACAAAGGATGGATGTCAACACAAAAACTATGCATATGCGATTTT
TGCGGCGATGATGCCAGCGTTTCATCACGAATAGACTGTCGTCCACGGTG
TATTGGGGAAATCTGGGTGCGGGGCGAGCGTGGCGAATCATGTCAGAGTA
GGACATGAGTAATGCATGGGCACCGCTTGGGGACAGGAGAGGTGACAGAA
GCGGGTATAGAGGTGATGATAGGGAAGTGGAGAGGATGTTGCAGCAAACG
CTGTGACAACGCACGTTGTGGCTAGGTTGTTGACGTCCTTGTTACGTGGT
TATTTGATGATGAATAACATTGCGAACGCCGACTGCTCACAACGTGTGAA
TTCTGCATTTTCGTTGACTACTGTATGTTCTCTGCATATCATCTTGTCCG
CGATACCGGCGAAATCTAACATCTCATAATTCCACACTTCATTCAAGAGC
ATGATAGAAGCCGGAAAACAAATAGTACTAGGGACCAACAGGCGCCTACG
GTGCCTCTGGGCATGAAACGAACAGGTGTGGAGCATGGGGAAATGAGAGG
TAGTATCAGGAAGAGCAAAGTGTGCAAAATGTGGGCAGTTCCGAGAGTGC
GTTTGAAAATATTGACGGAACGTCCGCGACAAGCGAGACAAGCGAGGCAA
TGTAAGAGATTCAAAATTAAGAGAGACATGCGGCGAAGAGGAAGTTAGAT
TCTTCGACATGTGGAGGTTCCTCATGATGCCACCGCTTGTGAGCAATGCC
TGTAAGAGGAAGAGCCAAACTCCAAATTTACGCAAACACGTTGGAGGAGC
AAGGTGTTCGATATTTCGAGGCTTCCGCGGGATTGGGCTTGTAGCGCGAG
CGTAAAGACAAGAATTGTGGAGCTTTTATCATGATGTAGGCGTGGAACAG
TGAGGGAGAGTGACAGAAAGGGGCACACGGTGGTTCCCTCATATCTCTCC
CCCAATCAATGACAAGAAACGGACCCGACCCAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig10752:31..5963+

>mRNA_H-paniculata_contig10752.480.1 ID=mRNA_H-paniculata_contig10752.480.1|Name=mRNA_H-paniculata_contig10752.480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2904bp|location=Sequence derived from alignment at H-paniculata_contig10752:31..5963+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCAAGGCCAAGTGCACCGAGCAGGAGAAGTACGTTCTGGTCGTGAG
CATCGATAACCTCGACCGATGCCCGTATCGCCAGATAGTCAAGGTGCTTG
AGGCGGCGCACCTTCTACTCGAGCAGGAAGAGATGATCAAGGCCAAGTGC
ACCGAGCAGGAGAAGTACGTTCTGGTCGTGAGCATCGATAACCTCGACCG
ATGCCCGTATCGCCAGATAGTCAAGGTGCTTGAGGCGGCGCACCTTCTAC
TCGAGCAGGAAGAGACCAATGTCGTACTTCTCTTGGCTTTGGACCCCAGG
GTGATCATCGCTGCTATTGAGGCCGACATGGATAATGCCATGAGGCAGGA
GACCAATGTCGTACTTCTCTTGGCTTTGGACCCCAGGGTGATCATCGCTG
CTATTGAGGCCGACATGGATAATGCCATGAGGCAGGAGGTGTCTGGTGCT
GAGTACCTGGACAAGATCATCCACTGGCCATTTTGTATCCCGTTTGGAAC
GAACAATGAACGACTGGACCTTATAGGAAACTGGCTGGAAACCTCGTGGG
TCGGTTCTCAAGAGGGGAGCACCTCACAGAGCACTAAAGGTGTCTGGTGC
TGAGTACCTGGACAAGATCATCCACTGGCCATTTTGTATCCCGTTTGGAA
CGAACAATGAACGACTGGACCTTATAGGAAACTGGCTGGAAACCTCGTGG
GTCGGTTCTCAAGAGGGGAGCACCTCACAGAGCACTAAAGATGCTGGGGA
GTTTGGTGGTATAAGGGGAGGAGATTCAGCGCTCGCGGCGATCAGCAACG
GCCGTTCGGAGCCCGCAGGCGCCAATCCCGGCCGGCAAACTGAATTTTTT
GCACGCGCCAGCGCTAATGCAACCCACGCAACAGACCGTGCGCTAGATTC
AAATTTCCTTGGCGACGAAGACGTGGACGCAGATCCTCATAACGAACAGA
TCCTGACCGCCGCCTCCGAGGGCAGTAGACTGCAACCCGATACACGACAA
GGTCTTGACACTATACCCGATCAAGTAGATGACCCCTTGCGGGAAGAAGC
CATTGCTCTGGCGGCAGAAGGTGGAATTGCAATGGGAGGGGGTGGTGGTG
AACCGCAAGAACGTGGTTACCAGCAAGGCTCGCATCACAACATTTCCTTC
CCGGGGGCGGCAGCGGTAGCGACGGCGCAAGTTCGTGAATCCGACGATAT
TCTGCCGGTACCTAAAATGCACACACGGGGCGAGCTGGAGGAGTTCCGAG
TTCTTGTAGAAACAGTGGTCACCACCCCTCGGAAGCTCAAGCGCGTCTAT
AATATATGCTGGGGAGTTTGGTGGTATAAGGGGAGGAGATTCAGCGCTCG
CGGCGATCAGCAACGGCCGTTCGGAGCCCGCAGGCGCCAATCCCGGCCGG
CAAACTGAATTTTTTGCACGCGCCAGCGCTAATGCAACCCACGCAACAGA
CCGTGCGCTAGATTCAAATTTCCTTGGCGACGAAGACGTGGACGCAGATC
CTCATAACGAACAGATCCTGACCGCCGCCTCCGAGGGCAGTAGACTGCAA
CCCGATACACGACAAGGTCTTGACACTATACCCGATCAAGTAGATGACCC
CTTGCGGGAAGAAGCCATTGCTCTGGCGGCAGAAGGTGGAATTGCAATGG
GAGGGGGTGGTGGTGAACCGCAAGAACGTGGTTACCAGCAAGGCTCGCAT
CACAACATTTCCTTCCCGGGGGCGGCAGCGGTAGCGACGGCGCAAGTTCG
TGAATCCGACGATATTCTGCCGGTACCTAAAATGCACACACGGGGCGAGC
TGGAGGAGTTCCGAGTTCTTGTAGAAACAGTGGTCACCACCCCTCGGAAG
CTCAAGCGCGTCTATAATATATACAGCATCCAACGCTCTCTGGCCATCAA
AATAGTCCGAAACTTCAGTCAAATTGACGCGCGGAAGCTCCTTAGGTGGA
CCTTCATTTCGGAGTTCTGATACAGCATCCAACGCTCTCTGGCCATCAAA
ATAGTCCGAAACTTCAGTCAAATTGACGCGCGGAAGCTCCTTAGGTGGAC
CTTCATTTCGGAGTTCTGGCCGTTTCGGGCGTCTTGCCTCGTTGGATACA
TTCCTATTGCTGGGCTTCCGCACGAAACGCTCGCTAACATCTACAGAGAG
AACGTGGCCGCAAGCATTGAGCAGATGATCGGCAAGCCCACGCCGTTTCG
GGCGTCTTGCCTCGTTGGATACATTCCTATTGCTGGGCTTCCGCACGAAA
CGCTCGCTAACATCTACAGAGAGAACGTGGCCGCAAGCATTGAGCAGATG
ATCGGCAAGCCCACATACAATAGGCTGTCCGCTGCTGGCCGGGGAGACCA
CTTGAACAGCCAAAGTGAGGCAAAATTGCCGTCAGGTGGGCAAGACGTAG
GTAGCTCCAGCCACGCGTGGACCGCGGCGCGGAGGCATCTAAGCATGGAC
GAGTCTGACGAGGGGATCATTAGGTTTCTGGAATCAGCACCTCAGCTGCG
GGTACAAGACTTTCTCGAGAAAAACCTCGGGCTGTTGCGCCTCTCGTTCA
ATCTGAATCCGGCGATGGTGGCAAGCGTCAGCTCGTGGACCCGCGCGAAC
TGGTATTGAATACAATAGGCTGTCCGCTGCTGGCCGGGGAGACCACTTGA
ACAGCCAAAGTGAGGCAAAATTGCCGTCAGGTGGGCAAGACGTAGGTAGC
TCCAGCCACGCGTGGACCGCGGCGCGGAGGCATCTAAGCATGGACGAGTC
TGACGAGGGGATCATTAGGTTTCTGGAATCAGCACCTCAGCTGCGGGTAC
AAGACTTTCTCGAGAAAAACCTCGGGCTGTTGCGCCTCTCGTTCAATCTG
AATCCGGCGATGGTGGCAAGCGTCAGCTCGTGGACCCGCGCGAACTGGTA
TTGA
back to top