mRNA_H-paniculata_contig10751.478.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10751.478.1
Unique NamemRNA_H-paniculata_contig10751.478.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10751.478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10751contigH-paniculata_contig10751:1713..4661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1347
Cds size1167
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10751.478.1prot_H-paniculata_contig10751.478.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10751 3495..4661 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928779.008299-UTR-H-paniculata_contig10751:1712..18231622928779.008299-UTR-H-paniculata_contig10751:1712..1823Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10751 1713..1823 +
1691480616.4797597-UTR-H-paniculata_contig10751:1712..18231691480616.4797597-UTR-H-paniculata_contig10751:1712..1823Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10751 1713..1823 +
1622928779.0200338-UTR-H-paniculata_contig10751:3426..34941622928779.0200338-UTR-H-paniculata_contig10751:3426..3494Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10751 3427..3494 +
1691480616.4901605-UTR-H-paniculata_contig10751:3426..34941691480616.4901605-UTR-H-paniculata_contig10751:3426..3494Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10751 3427..3494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928779.0460467-CDS-H-paniculata_contig10751:3494..46611622928779.0460467-CDS-H-paniculata_contig10751:3494..4661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10751 3495..4661 +
1691480616.5021684-CDS-H-paniculata_contig10751:3494..46611691480616.5021684-CDS-H-paniculata_contig10751:3494..4661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10751 3495..4661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10751.478.1

>prot_H-paniculata_contig10751.478.1 ID=prot_H-paniculata_contig10751.478.1|Name=mRNA_H-paniculata_contig10751.478.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=389bp
MAAPFYGSPQQGRKRSAAGAAAAATAAGRPPAGDASEVSPRTSSRNNELT
LLTPEPAGKRRGRRGTLDGTCSLGRGGGAEADDGPDAAGDTVFTPGTNTA
HLLLHLRSSWRTRAASPSAGPSAPTTGRPKATSSPLIDAGEDNDRGGVVS
GGGGSGDDETDDVEISSPDDVKPRAFFSSVAARRRESAPAVLPPMSSLPH
KKRHKTTAGTAAQKGGGGAAAAAAGDSKGRKTGGKSSRGNGHVKIPNGTA
TAAIAATEAAATSGASASAAAAAAAATAAAAAAAAAAAAAVAAAATTVSP
DVVTGNSNRRRGDSGGGCSGKELVGVVAGRGSGVNDKVNGRGSASDRTAL
RDMVSASRKDGSGGGRGGGAGCAVTGQPQRRWAAATAVA
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mRNA from alignment at H-paniculata_contig10751:1713..4661+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10751.478.1 ID=mRNA_H-paniculata_contig10751.478.1|Name=mRNA_H-paniculata_contig10751.478.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2949bp|location=Sequence derived from alignment at H-paniculata_contig10751:1713..4661+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAGGCAGAAAGCGTTGTGCTGGCGGTGGCTGAAGCAGTGGAGAGCTCG
GCTGCAAACAAACAGAATTATTTAGCGTCCTTCACTGTGCCCAGCAAATA
CTACACCCAAGGTCTGTGTACAACTTCTACTGTACTAGTTGGCATGCACC
ATGAAACGGTGTGGTTTGGGGGTTGGCTGTGCAATTCGTGTTCAAAACCG
AATTATCGGAAAGGGTTGGTTCAAAAGCAAGTCATCTTTTCACAGCTGAT
GCAGCAGCTTTGTTCATTTGTGTGCACTTACAAAACTGTTATGCACCCAC
TCACCGGCTGCTCCGGACAAGCAGACTATCAGTATGCCCTGGTCTTATCT
ATAACCCCCCCCCCCCCGCCCGTGCTTGCACTGTATGCAAAGGCTGCGCA
GCAGTAGTTGTCGTTGTTCCAAAGCTCTGCGAGCAAAACAGCCGGCTTGC
CACAGACGATGACCTGCACCCCTGGTTAAATTTAAACAGTGTACCTTAAA
TTTGGAGCGCAGGGCTTGTCAATGTTGATTTCTTCGCGTTGAAAACGCTG
CGTACACTGAGTTTGTCTCACAGAAAGACGACACTTTCCAAATCTTCCGC
GGTACTGCTCGGGTTTGGTGGTGCAGGCCCATTTTGTTCGCAGTACACCG
TTGATGCGCTGGGACAACTTTTTTTTCATAATCCACAGCCTTCACTTCAA
AACTCAACGACCGCACCCACAATGACCAATTGCAACCACAATGGCAGCAC
ACAGACAGTCAGAAACAGAGAGGAGTGACGGACAAATTTCCACCCCCATA
TATGCGCGACTGTAGGTCACAAGCATGCGTTGCAGCAGACCCAGTGGCGA
CCGTTGCAGCGTTTTCTATGATATTAAACGCCTTGAAATGCTAGTAGAGG
TGTAGCGGTTCGGACTTGGTGACAGACACCTCACGGTTCTCAAAATGGCC
GTTGATCCCCAAAATGCGCATCGCCGTTTTCAAACAACACGGGTGCCCGA
ATGGTTCTCCCTGCCTCCAGTTCGCTAGTTGCAGTTATTATTATAGCGAC
GCTTGCGACGTCTTTTGCGTGTGTGCGTGTGTGCTTGTGTGTGTGCGTGC
TGATATAACGTTGCTTGGGGGTACAGTGAGTTGTTTGAACGGACAGCGTG
TCGTGTCATTTACAGAATGCTCACTGGAACCAAAAAACAGCAAGCAGTTA
TTACAAGCTTTTACTACAGAAATTTCTGTACATGTTTGAACTGGAGTTCG
GACCGTTTTAAACGCCAAACGTCCTCGCTCTTACTGTTGTATAGTATACC
GTGCTCGGTCTTGGAGGTGTAGCAAATCGTGCGTATTGTTGTGGGTGCGT
GCATAAAATGATAAGATATTCTCTCTACATTACTTCTGCCTGTACAGGCT
AGTGGCTTATCACCTTCCCCCGTAATGTTGGCTGTGCTGTAACTGCAAGT
ACTACGAACGCCGTCCATTTCAAAGACTTGAAAAATGGAAGTAGTGAATC
CCTCGCTCGCGTCTAGGGCTACACCTTGCGCGTACCCACTCATCCTCTAC
CTTCACCTCTACTACCATAGGTCGCACTCCGCAACTCATATTTTCGCGGT
GCCTTCTCTCCTGTCCTTCATCCGCATAATTATCTCTACTCCCTTCCAAC
CCAATACGCGCTCTCGCTCTCTCGTTCATGTACACACACATTTTTTGTGG
TCGCCGTCAAACAGCTATTGCATCAACTTGAATACAAAATATATTGCCGA
CGGAGTGGAGGGCGGCACAGAAGGAAAGAAACATGGCAGCACCGTTTTAC
GGCTCTCCCCAACAAGGAAGGAAAAGATCTGCTGCGGGCGCGGCAGCGGC
GGCGACAGCGGCGGGGCGGCCGCCGGCCGGGGATGCCTCCGAGGTGTCCC
CGCGGACGTCGTCGCGGAATAACGAATTGACCCTCTTGACGCCCGAACCC
GCGGGGAAGCGGAGAGGTCGGCGAGGGACGCTAGATGGTACCTGCAGTCT
CGGGAGAGGAGGAGGAGCAGAAGCAGACGATGGACCGGACGCGGCGGGCG
ATACAGTTTTCACTCCTGGAACCAATACAGCACATCTTCTTTTGCATCTG
CGGAGCAGCTGGCGAACCCGGGCGGCTTCGCCGTCGGCGGGGCCCTCCGC
GCCTACTACCGGCCGACCCAAAGCTACTTCGTCTCCACTTATTGATGCCG
GCGAGGACAACGACCGAGGTGGGGTTGTCTCCGGTGGCGGCGGCAGCGGC
GACGACGAAACCGACGATGTAGAAATTTCTTCCCCTGATGATGTCAAGCC
TCGGGCTTTTTTCTCCTCCGTCGCGGCGAGAAGAAGAGAATCTGCCCCGG
CGGTCTTGCCGCCGATGTCCTCCTTGCCCCACAAAAAACGACACAAGACG
ACAGCGGGCACGGCGGCGCAGAAGGGCGGAGGAGGAGCGGCGGCGGCGGC
GGCAGGAGACAGCAAGGGGCGAAAGACTGGCGGAAAATCCTCACGAGGAA
ATGGTCACGTAAAAATTCCCAACGGGACGGCGACGGCGGCAATAGCGGCG
ACAGAGGCGGCGGCGACATCAGGGGCTTCTGCCTCTGCTGCAGCGGCAGC
GGCAGCGGCAACGGCTGCGGCAGCGGCGGCTGCTGCTGCGGCGGCTGCTG
CTGTGGCTGCGGCTGCTACTACGGTTTCCCCCGACGTTGTCACGGGAAAC
AGTAACAGACGAAGGGGCGACAGTGGCGGCGGATGTAGCGGAAAGGAGTT
GGTGGGAGTGGTAGCTGGGCGAGGGAGCGGTGTGAACGATAAGGTGAACG
GCAGGGGCAGTGCAAGCGACCGGACGGCGTTGCGGGATATGGTCTCCGCC
AGCAGGAAGGACGGTAGCGGTGGGGGACGTGGCGGAGGAGCAGGCTGTGC
AGTAACTGGCCAGCCCCAGCGACGGTGGGCGGCGGCGACCGCGGTGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig10751:1713..4661+

>mRNA_H-paniculata_contig10751.478.1 ID=mRNA_H-paniculata_contig10751.478.1|Name=mRNA_H-paniculata_contig10751.478.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2334bp|location=Sequence derived from alignment at H-paniculata_contig10751:1713..4661+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGCACCGTTTTACGGCTCTCCCCAACAAGGAAGGAAAAGATCTGC
TGCGGGCGCGGCAGCGGCGGCGACAGCGGCGGGGCGGCCGCCGGCCGGGG
ATGCCTCCGAGGTGTCCCCGCGGACGTCGTCGCGGAATAACGAATTGACC
CTCTTGACGCCCGAACCCGCGGGGAAGCGGAGAGGTCGGCGAGGGACGCT
AGATGGTACCTGCAGTCTCGGGAGAGGAGGAGGAGCAGAAGCAGACGATG
GACCGGACGCGGCGGGCGATACAGTTTTCACTCCTGGAACCAATACAGCA
CATCTTCTTTTGCATCTGCGGAGCAGCTGGCGAACCCGGGCGGCTTCGCC
GTCGGCGGGGCCCTCCGCGCCTACTACCGGCCGACCCAAAGCTACTTCGT
CTCCACTTATTGATGCCGGCGAGGACAACGACCGAGGTGGGGTTGTCTCC
GGTGGCGGCGGCAGCGGCGACGACGAAACCGACGATGTAGAAATTTCTTC
CCCTGATGATGTCAAGCCTCGGGCTTTTTTCTCCTCCGTCGCGGCGAGAA
GAAGAGAATCTGCCCCGGCGGTCTTGCCGCCGATGTCCTCCTTGCCCCAC
AAAAAACGACACAAGACGACAGCGGGCACGGCGGCGCAGAAGGGCGGAGG
AGGAGCGGCGGCGGCGGCGGCAGGAGACAGCAAGGGGCGAAAGACTGGCG
GAAAATCCTCACGAGGAAATGGTCACGTAAAAATTCCCAACGGGACGGCG
ACGGCGGCAATAGCGGCGACAGAGGCGGCGGCGACATCAGGGGCTTCTGC
CTCTGCTGCAGCGGCAGCGGCAGCGGCAACGGCTGCGGCAGCGGCGGCTG
CTGCTGCGGCGGCTGCTGCTGTGGCTGCGGCTGCTACTACGGTTTCCCCC
GACGTTGTCACGGGAAACAGTAACAGACGAAGGGGCGACAGTGGCGGCGG
ATGTAGCGGAAAGGAGTTGGTGGGAGTGGTAGCTGGGCGAGGGAGCGGTG
TGAACGATAAGGTGAACGGCAGGGGCAGTGCAAGCGACCGGACGGCGTTG
CGGGATATGGTCTCCGCCAGCAGGAAGGACGGTAGCGGTGGGGGACGTGG
CGGAGGAGCAGGCTGTGCAGTAACTGGCCAGCCCCAGCGACGGTGGGCGG
CGGCGACCGCGGTGGCGATGGCAGCACCGTTTTACGGCTCTCCCCAACAA
GGAAGGAAAAGATCTGCTGCGGGCGCGGCAGCGGCGGCGACAGCGGCGGG
GCGGCCGCCGGCCGGGGATGCCTCCGAGGTGTCCCCGCGGACGTCGTCGC
GGAATAACGAATTGACCCTCTTGACGCCCGAACCCGCGGGGAAGCGGAGA
GGTCGGCGAGGGACGCTAGATGGTACCTGCAGTCTCGGGAGAGGAGGAGG
AGCAGAAGCAGACGATGGACCGGACGCGGCGGGCGATACAGTTTTCACTC
CTGGAACCAATACAGCACATCTTCTTTTGCATCTGCGGAGCAGCTGGCGA
ACCCGGGCGGCTTCGCCGTCGGCGGGGCCCTCCGCGCCTACTACCGGCCG
ACCCAAAGCTACTTCGTCTCCACTTATTGATGCCGGCGAGGACAACGACC
GAGGTGGGGTTGTCTCCGGTGGCGGCGGCAGCGGCGACGACGAAACCGAC
GATGTAGAAATTTCTTCCCCTGATGATGTCAAGCCTCGGGCTTTTTTCTC
CTCCGTCGCGGCGAGAAGAAGAGAATCTGCCCCGGCGGTCTTGCCGCCGA
TGTCCTCCTTGCCCCACAAAAAACGACACAAGACGACAGCGGGCACGGCG
GCGCAGAAGGGCGGAGGAGGAGCGGCGGCGGCGGCGGCAGGAGACAGCAA
GGGGCGAAAGACTGGCGGAAAATCCTCACGAGGAAATGGTCACGTAAAAA
TTCCCAACGGGACGGCGACGGCGGCAATAGCGGCGACAGAGGCGGCGGCG
ACATCAGGGGCTTCTGCCTCTGCTGCAGCGGCAGCGGCAGCGGCAACGGC
TGCGGCAGCGGCGGCTGCTGCTGCGGCGGCTGCTGCTGTGGCTGCGGCTG
CTACTACGGTTTCCCCCGACGTTGTCACGGGAAACAGTAACAGACGAAGG
GGCGACAGTGGCGGCGGATGTAGCGGAAAGGAGTTGGTGGGAGTGGTAGC
TGGGCGAGGGAGCGGTGTGAACGATAAGGTGAACGGCAGGGGCAGTGCAA
GCGACCGGACGGCGTTGCGGGATATGGTCTCCGCCAGCAGGAAGGACGGT
AGCGGTGGGGGACGTGGCGGAGGAGCAGGCTGTGCAGTAACTGGCCAGCC
CCAGCGACGGTGGGCGGCGGCGACCGCGGTGGCG
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