mRNA_H-paniculata_contig10749.476.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10749.476.1
Unique NamemRNA_H-paniculata_contig10749.476.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10749.476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10749contigH-paniculata_contig10749:2797..4432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size206
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928778.603888-CDS-H-paniculata_contig10749:2796..29041622928778.603888-CDS-H-paniculata_contig10749:2796..2904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10749 2797..2904 -
1691480616.365877-CDS-H-paniculata_contig10749:2796..29041691480616.365877-CDS-H-paniculata_contig10749:2796..2904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10749 2797..2904 -
1622928778.6219363-CDS-H-paniculata_contig10749:4336..44321622928778.6219363-CDS-H-paniculata_contig10749:4336..4432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10749 4337..4432 -
1691480616.3753595-CDS-H-paniculata_contig10749:4336..44321691480616.3753595-CDS-H-paniculata_contig10749:4336..4432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10749 4337..4432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10749.476.1prot_H-paniculata_contig10749.476.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10749 2797..4432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10749.476.1

>prot_H-paniculata_contig10749.476.1 ID=prot_H-paniculata_contig10749.476.1|Name=mRNA_H-paniculata_contig10749.476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
DSEVSNTSKVDGHGGSQQPFKRPKTDHVMHFEDPADDKEVIAGHLKSYVA
VDGHDMLAVPARAMSPQ*
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mRNA from alignment at H-paniculata_contig10749:2797..4432-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10749.476.1 ID=mRNA_H-paniculata_contig10749.476.1|Name=mRNA_H-paniculata_contig10749.476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1636bp|location=Sequence derived from alignment at H-paniculata_contig10749:2797..4432- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGCGAAGTCAGCAACACGTCAAAGGTCGACGGACATGGCGGCTCTCA
GCAACCGTTCAAGCGTCCGAAAACAGATCATGTCATGCATTTTGAGGTGA
GGATGGAAAGGGAGAGTGAACCAAGTCACCACTTGCGCTCTCCTTGTTTA
TCGATAACACTATATGTTTTGTCGATTGGTGTTTGACGACTTGGCGAGGC
AAAGGTTGCTAAATGCGATAGATAGTACCTACCCGTTTTTATAGAGTCCA
TGATTTCTGTTCTGTGTATATGCTGGCTTGGATTGGGTGAAACTCCCACA
CTGCCTACCTGGTTCAAAGCCGAGCCGGGGTGGCGCCTACCCCGCAGAGG
AATAAATAACTCTGTTCTGTTAAAGGAAATGTAGACATGTTTGGGCGAAT
GCCTGGATGTGGAAGCAGCGGAAAAGGTTTTTACCTCAGCCTTCCGGGGG
TTAAAAAAACAAACGCTGGCTTGGATACATGTATAGCACAAGCCTCTATA
ATTTTTTACGGAAGATGATGCAGCAAGGATGTGGCACGGTCGCCGGGCCT
CACGTCTCCGTGTTTTTCATGTGCGATCTACGATTTCTTTGGTATGATAT
TTAATATAAAGTTGTACACTTCTGCCTTTTGATGTATGTACCGATATCCG
TTCCTACTACGAATATTGACGTTCATTCTGAAATCCGTTAGTCGTGTTTC
CATGATATTTAATATAAAGTTGTACACTTCTGCCTTTTGATGTATGTACC
GATATCCGTTCCTACTACGAATATTGACGTTCATTCTGAAATCCGTTAGT
CGTGTTTCCAAGAGAAACGCAAAGTCGGTAACTTCACAACACCTCGGGCG
TGCCCACGTGGGAGTACCCTTGTTGGAAAGCAGACGGTGAAAACGTTCAA
TGAAACCCCGCACAGTTGTAGGCGCGCTCACTTTCAGCACGTGCAAAACA
ACACAGAACTGACCAACTCAACGGGCAGCCAGTTCATAACATAAGTAATT
ATTATAATTTATATAAAATATACATTATTAGAGTGTTTGAGCAAACGGAA
TTCCTTTTCTACATTTCGAGTTGGTCGTGTGTCCTGGTGTAGGTTAACTG
GGACCCGGGACGTGAAGCTCATTGTGAGCCACATACGACCAAATCGAAAC
GTAGGAAAGGATTTCCTTTGCGCGAGCACCCAATATATTCTTTAGTTATT
ACAAGTTATATAAATGATGTTTATCACCATATCATTCACGAACGACTCTT
AAACGGCATGTCATACACAGGTAAAACAGCAAAGAGGTGAGGCCGCACAA
CATTTGTTGTTGTTGTTGTTTTTATTGTTTTTATTGTTTACAACGAGTAA
TATGAATTGTAGGGCCGGATAGACGATGCTCGAAGGTTAACTGGCAATTC
AAATAATCCTGATCCTGTCTATCAGACGTTAACGGAAAGGTGCTATTTTG
ATTTCTTAAAATTGATTATCGTTTTTGCGTTGTTCATGCTGATTTCGATT
CCCAACTCTGGTGAGCACCGTCGAATAGGACCCGGCGGACGACAAAGAGG
TGATAGCCGGTCATCTAAAGAGCTATGTAGCGGTTGATGGGCACGACATG
CTAGCTGTGCCTGCACGGGCGATGTCCCCACAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig10749:2797..4432-

>mRNA_H-paniculata_contig10749.476.1 ID=mRNA_H-paniculata_contig10749.476.1|Name=mRNA_H-paniculata_contig10749.476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig10749:2797..4432- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGCGAAGTCAGCAACACGTCAAAGGTCGACGGACATGGCGGCTCTCA
GCAACCGTTCAAGCGTCCGAAAACAGATCATGTCATGCATTTTGAGGACA
GCGAAGTCAGCAACACGTCAAAGGTCGACGGACATGGCGGCTCTCAGCAA
CCGTTCAAGCGTCCGAAAACAGATCATGTCATGCATTTTGAGGACCCGGC
GGACGACAAAGAGGTGATAGCCGGTCATCTAAAGAGCTATGTAGCGGTTG
ATGGGCACGACATGCTAGCTGTGCCTGCACGGGCGATGTCCCCACAGTAA
GACCCGGCGGACGACAAAGAGGTGATAGCCGGTCATCTAAAGAGCTATGT
AGCGGTTGATGGGCACGACATGCTAGCTGTGCCTGCACGGGCGATGTCCC
CACAGTAA
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