mRNA_H-paniculata_contig10747.473.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10747.473.1
Unique NamemRNA_H-paniculata_contig10747.473.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10747.473.1 vs. uniprot
Match: D8LI97_ECTSI (Transmembrane protein 18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI97_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 6.660e-42
Identity = 69/96 (71.88%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 FRYAVDWEERWIQGVLAFHLCLLVFFLVTRKHFGCQQAGLFTVILVGARSSELINTYLRHHWREFSRQNYFDEHGVFMGVMWAGPLLLLGFAMLVS 288
            FR AVDW E WIQG+L FHL L VFF+VTR+ FG Q  GLF V+L G R SE INT LR  W+ FSRQNYFDEHG+FMGVMWAGPLL+LGF MLVS
Sbjct:   64 FRSAVDWSEPWIQGILVFHLLLWVFFIVTRRSFGAQ-VGLFAVVLTGTRLSEFINTCLRDRWQNFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVS 158
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BLAST of mRNA_H-paniculata_contig10747.473.1 vs. uniprot
Match: A0A7S2Y0G5_9STRA (Transmembrane protein 18 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0G5_9STRA)

HSP 1 Score: 105 bits (261), Expect = 7.190e-26
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:    1 FRYAVDWEERWIQGVLAFHLCLLVFFLVTRKHFGCQQAGLFTVILVGARSSELINTYLRHHWREFSRQNYFDEHGVFMGVMWAGPLLLLGFAML 282
            F+ AV+WEERWIQG+LAFH+ + V  LV RK+F  Q   +F +I+     SE INT  ++HW+EFS Q+YFD +G+FM VM+AGPLLL+GF  L
Sbjct:   81 FKAAVNWEERWIQGILAFHVIVFVLMLVFRKNFNVQVC-IFLLIVGLVSCSETINTLGQNHWQEFSTQDYFDPNGLFMMVMFAGPLLLIGFLQL 173
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BLAST of mRNA_H-paniculata_contig10747.473.1 vs. uniprot
Match: A0A837A383_9ROSI (Transmembrane protein 18 n=4 Tax=Salix TaxID=40685 RepID=A0A837A383_9ROSI)

HSP 1 Score: 102 bits (253), Expect = 2.860e-25
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:    1 FRYAVDWEERWIQGVLAFHLCLLVFFLVTRKHFGCQQAGLFTVILVGARSSELINTYLRHHWREFSRQNYFDEHGVFMGVMWAGPLLLLGFAMLVS 288
            F +A+DW+E WI G+  FHL LL+  +V+RKH   Q + LF + L G   SE +N  L  +WR F+ QNYFD HGVF+ V+W+GPLL++   +L++
Sbjct:   40 FFHAIDWKEPWIMGLTGFHLLLLILTIVSRKHINFQMS-LFLLALAGVYLSERLNRVLSDNWRSFASQNYFDPHGVFLSVLWSGPLLIIAIIILIN 134
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BLAST of mRNA_H-paniculata_contig10747.473.1 vs. uniprot
Match: UPI00053C8669 (transmembrane protein 18-like n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C8669)

HSP 1 Score: 100 bits (248), Expect = 1.540e-24
Identity = 45/96 (46.88%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:    1 FRYAVDWEERWIQGVLAFHLCLLVFFLVTRKHFGCQQAGLFTVILVGARSSELINTYLRHHWREFSRQNYFDEHGVFMGVMWAGPLLLLGFAMLVS 288
            F +A+DW+E WI G+LAFH+ LL+  L++RKH       LF + L G   +E +N +L  +W+ FS QNYFD HGVF+ V+W+GPLL+L   +L++
Sbjct:   40 FYHAIDWKEPWIMGLLAFHVVLLLVTLLSRKHLNFHMC-LFLLALAGVYFAEGLNGFLGKNWKSFSTQNYFDPHGVFLSVLWSGPLLVLAMIILIN 134
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BLAST of mRNA_H-paniculata_contig10747.473.1 vs. uniprot
Match: U5FW19_POPTR (Transmembrane protein 18 n=8 Tax=Populus TaxID=3689 RepID=U5FW19_POPTR)

HSP 1 Score: 99.0 bits (245), Expect = 4.600e-24
Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:    1 FRYAVDWEERWIQGVLAFHLCLLVFFLVTRKHFGCQQAGLFTVILVGARSSELINTYLRHHWREFSRQNYFDEHGVFMGVMWAGPLLLLGFAMLVS 288
            F +A+DW E W+ G++ FHL LL+  +V+RKH   Q +  F V L G   SE +N  L  +WR F+ QNYFD HG+F+ V+W+GPLL++   +L++
Sbjct:   40 FFHAIDWTEPWLMGLIGFHLALLILTVVSRKHINFQMS-FFLVALAGVYLSERLNRVLGDNWRSFASQNYFDPHGLFLSVLWSGPLLIIATIILIN 134
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BLAST of mRNA_H-paniculata_contig10747.473.1 vs. uniprot
Match: A0A3S3NNY2_9MAGN (Transmembrane protein 18 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3NNY2_9MAGN)

HSP 1 Score: 96.3 bits (238), Expect = 9.690e-23
Identity = 41/96 (42.71%), Postives = 68/96 (70.83%), Query Frame = 1 
Query:    1 FRYAVDWEERWIQGVLAFHLCLLVFFLVTRKHFGCQQAGLFTVILVGARSSELINTYLRHHWREFSRQNYFDEHGVFMGVMWAGPLLLLGFAMLVS 288
            F +A+DW+E W+ G+++FH+ LL+  ++TR++   Q   LF + L G   +E INT L ++W+ F+ QNYFD HG+F+ V+W+GPLLL+   +L++
Sbjct:   40 FFHAIDWKEPWLIGLISFHVLLLLTVIMTRRNLNFQMC-LFLMALTGVYLAERINTVLANNWKNFAGQNYFDPHGIFLSVLWSGPLLLIAIIILMN 134
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BLAST of mRNA_H-paniculata_contig10747.473.1 vs. uniprot
Match: A0A2P2JKI0_RHIMU (Transmembrane protein 18 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2JKI0_RHIMU)

HSP 1 Score: 95.5 bits (236), Expect = 9.940e-23
Identity = 41/96 (42.71%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:    1 FRYAVDWEERWIQGVLAFHLCLLVFFLVTRKHFGCQQAGLFTVILVGARSSELINTYLRHHWREFSRQNYFDEHGVFMGVMWAGPLLLLGFAMLVS 288
            F +A+DW E W+ G++ FH+ LLV  +++RKH   Q   LF + L G   +E +N  LR +WR F+ QNYFD HG+F+ ++W+GPLL++   +L++
Sbjct:   40 FFHAIDWTEPWLMGLMGFHVLLLVVTILSRKHVNFQMC-LFLLALSGVYFAENLNGILRDNWRTFASQNYFDRHGLFLSLLWSGPLLVIAMIILIN 134
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BLAST of mRNA_H-paniculata_contig10747.473.1 vs. uniprot
Match: A0A7C8ZPU6_OPUST (Transmembrane protein 18 n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZPU6_OPUST)

HSP 1 Score: 95.1 bits (235), Expect = 1.410e-22
Identity = 41/96 (42.71%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:    1 FRYAVDWEERWIQGVLAFHLCLLVFFLVTRKHFGCQQAGLFTVILVGARSSELINTYLRHHWREFSRQNYFDEHGVFMGVMWAGPLLLLGFAMLVS 288
            F +A+DW+E W+ G+L FH+ LL+  +++R+H   Q   LF + L G   +E +N  L  HW+ F+ QNYFD HG+F+ V+W+GPLL++  ++LV+
Sbjct:   40 FFHAIDWKEPWLVGLLGFHVLLLLTTIISRRHVNFQMC-LFLLALSGIYLAERLNRLLGVHWQSFATQNYFDPHGLFLSVLWSGPLLIISMSILVN 134
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BLAST of mRNA_H-paniculata_contig10747.473.1 vs. uniprot
Match: A0A835ZFQ2_9STRA (Transmembrane protein 18 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ2_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.890e-22
Identity = 46/95 (48.42%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:    1 FRYAVDWEERWIQGVLAFHLCLLVFFLVTRKHFGCQQAGLFTVILVGARSSELINTYLRHHWREFSRQNYFDEHGVFMGVMWAGPLLLLGFAMLV 285
            F  AVDW E WIQ +L FH+ +    L++R    CQ A LF  I    R +E  N Y    WR+F+RQNYFDE GVF+GV+W  PLLL+   ML+
Sbjct:   40 FCAAVDWSETWIQAILCFHVAVAAAALLSRNRLNCQIA-LFLSICALVRGAEWANAYAARRWRDFARQNYFDERGVFVGVVWCAPLLLVLLGMLL 133
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BLAST of mRNA_H-paniculata_contig10747.473.1 vs. uniprot
Match: A0A199W083_ANACO (Transmembrane protein 18 n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A199W083_ANACO)

HSP 1 Score: 94.7 bits (234), Expect = 1.990e-22
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    1 FRYAVDWEERWIQGVLAFHLCLLVFFLVTRKHFGCQQAGLFTVILV--GARSSELINTYLRHHWREFSRQNYFDEHGVFMGVMWAGPLLLLGFAMLVS 288
            F +A+DW+E W+ G+LAFH+ LL+  ++TRKH   Q   LF  IL   G   +E INT L  HW+ F+ QNYFD  G+F+ V+W+GPLLL+   ++V+
Sbjct:   40 FFHAIDWKEPWLIGLLAFHVLLLLATIITRKHVNFQ---LFLSILAFSGVYLAERINTLLGEHWKSFASQNYFDPQGLFISVLWSGPLLLIAILIVVN 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10747.473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI97_ECTSI6.660e-4271.88Transmembrane protein 18 n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2Y0G5_9STRA7.190e-2655.32Transmembrane protein 18 n=1 Tax=Fibrocapsa japoni... [more]
A0A837A383_9ROSI2.860e-2546.88Transmembrane protein 18 n=4 Tax=Salix TaxID=40685... [more]
UPI00053C86691.540e-2446.88transmembrane protein 18-like n=1 Tax=Tarenaya has... [more]
U5FW19_POPTR4.600e-2444.79Transmembrane protein 18 n=8 Tax=Populus TaxID=368... [more]
A0A3S3NNY2_9MAGN9.690e-2342.71Transmembrane protein 18 n=1 Tax=Cinnamomum micran... [more]
A0A2P2JKI0_RHIMU9.940e-2342.71Transmembrane protein 18 n=1 Tax=Rhizophora mucron... [more]
A0A7C8ZPU6_OPUST1.410e-2242.71Transmembrane protein 18 n=1 Tax=Opuntia streptaca... [more]
A0A835ZFQ2_9STRA1.890e-2248.42Transmembrane protein 18 n=1 Tax=Tribonema minus T... [more]
A0A199W083_ANACO1.990e-2246.94Transmembrane protein 18 n=3 Tax=Ananas comosus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10747contigH-paniculata_contig10747:1994..2858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue3e-32
Seed eggNOG ortholog2880.D8LI97
Preferred nameTMEM18
KEGG koko:K22145
KEGG TC9.B.228.1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0006928,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016477,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0040011,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0048870,GO:0051179,GO:0051674
EggNOG free text desc.DNA binding
EggNOG OGs2AIGZ@1,2RZ4T@2759
Ec32 ortholog descriptionTransmembrane protein 18
Ec32 orthologEc-14_003690.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons2
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928778.2560167-CDS-H-paniculata_contig10747:1993..21011622928778.2560167-CDS-H-paniculata_contig10747:1993..2101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10747 1994..2101 +
1691480616.2192502-CDS-H-paniculata_contig10747:1993..21011691480616.2192502-CDS-H-paniculata_contig10747:1993..2101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10747 1994..2101 +
1622928778.2695193-CDS-H-paniculata_contig10747:2642..28581622928778.2695193-CDS-H-paniculata_contig10747:2642..2858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10747 2643..2858 +
1691480616.2305772-CDS-H-paniculata_contig10747:2642..28581691480616.2305772-CDS-H-paniculata_contig10747:2642..2858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10747 2643..2858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10747.473.1prot_H-paniculata_contig10747.473.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10747 1994..2858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10747.473.1

>prot_H-paniculata_contig10747.473.1 ID=prot_H-paniculata_contig10747.473.1|Name=mRNA_H-paniculata_contig10747.473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
FRYAVDWEERWIQGVLAFHLCLLVFFLVTRKHFGCQQAGLFTVILVGARS
SELINTYLRHHWREFSRQNYFDEHGVFMGVMWAGPLLLLGFAMLVSKRTA
MKTVKHML
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mRNA from alignment at H-paniculata_contig10747:1994..2858+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10747.473.1 ID=mRNA_H-paniculata_contig10747.473.1|Name=mRNA_H-paniculata_contig10747.473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=865bp|location=Sequence derived from alignment at H-paniculata_contig10747:1994..2858+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCGATATGCAGTGGATTGGGAGGAGCGATGGATACAGGGTGTGCTGGC
CTTCCATTTGTGTCTGCTCGTGTTCTTCCTCGTGACGAGGAAGCACTTTG
GCTGCCAGGTAGAGTGGTTACATCGGTGTGAAGGGGAAGCGATGCTTGTT
TATTTTCATCTTGTGTTACTTTGAAGTACGTGTTCTCCATCGTGCAACAG
ACGGTATGAGCATCCAACATTACAAGTAACGTTTCACATCACGTACTGAC
TCTGCTTTGAGTTTTTCGCCGTTCACTGCACATTTGTCGTTTTTCTGGTT
CATTTTGGTGTTTCCTCCTACGCCCCCTAAATCCATTACAAGGTGCTACG
AGTTTTTTCGTAGTTATTAAATTTTTTATTTGACTCACGTTGTACCGCCT
GTCCTCTGCTCTCTACCTGACCGAGGCGTGTAGGGCGAAGTGTTGCTGTG
CGTGTGGGATCAGCTTGTCGCTGCTTGTCGCTGGCTTGAGATTGCACGGC
TTGAACACCGTCAATAGATGGTACTGTAGACATCTATGATCAAAACCAGT
CACACTGGATACCAAGAAACGCGCCTGGGTGAACCTGCCCCTGGCAAGAT
AGTCGCAACCGCAACCGTTCCACTGTTTTCTTGCCGTTGTCCGAGTGAGC
AGGCTGGTCTCTTCACCGTTATTTTAGTTGGGGCTAGATCTAGTGAACTT
ATCAACACCTACCTCCGGCATCACTGGCGGGAGTTCTCGAGGCAAAATTA
TTTTGACGAACACGGTGTTTTCATGGGGGTTATGTGGGCCGGTCCGCTGC
TGCTGCTGGGATTTGCAATGTTGGTGAGTAAACGCACCGCCATGAAAACG
GTAAAACACATGCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig10747:1994..2858+

>mRNA_H-paniculata_contig10747.473.1 ID=mRNA_H-paniculata_contig10747.473.1|Name=mRNA_H-paniculata_contig10747.473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig10747:1994..2858+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCGATATGCAGTGGATTGGGAGGAGCGATGGATACAGGGTGTGCTGGC
CTTCCATTTGTGTCTGCTCGTGTTCTTCCTCGTGACGAGGAAGCACTTTG
GCTGCCAGTTCCGATATGCAGTGGATTGGGAGGAGCGATGGATACAGGGT
GTGCTGGCCTTCCATTTGTGTCTGCTCGTGTTCTTCCTCGTGACGAGGAA
GCACTTTGGCTGCCAGCAGGCTGGTCTCTTCACCGTTATTTTAGTTGGGG
CTAGATCTAGTGAACTTATCAACACCTACCTCCGGCATCACTGGCGGGAG
TTCTCGAGGCAAAATTATTTTGACGAACACGGTGTTTTCATGGGGGTTAT
GTGGGCCGGTCCGCTGCTGCTGCTGGGATTTGCAATGTTGGTGAGTAAAC
GCACCGCCATGAAAACGGTAAAACACATGCTTCAGGCTGGTCTCTTCACC
GTTATTTTAGTTGGGGCTAGATCTAGTGAACTTATCAACACCTACCTCCG
GCATCACTGGCGGGAGTTCTCGAGGCAAAATTATTTTGACGAACACGGTG
TTTTCATGGGGGTTATGTGGGCCGGTCCGCTGCTGCTGCTGGGATTTGCA
ATGTTGGTGAGTAAACGCACCGCCATGAAAACGGTAAAACACATGCTT
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